>TOM40_RAT (Q75Q40) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog) (38 kDa mitochondrial outer membrane protein)
           (OM38)
          Length = 361

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
 Frame = -3

Query: 269 GGLLACCSSGAGHPPPTPPCIGFVMVAEPVPP----PLLSCSIRGESMAGLGQEDTPSLS 102
           G +LA  S  AG PPP  P +  +    P PP    P L   +   S AG G E TP  +
Sbjct: 2   GNVLAASSPPAGPPPPPTPSLVGLPPPPPSPPGFTLPPLGGGLGTGSNAGRGSERTPGAA 61

Query: 101 LC-LKLVGNGGRC 66
                   N G C
Sbjct: 62  ASGAAASSNDGNC 74

>DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2)
          Length = 1101

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 242 GAGHPPPTPPCIGFVMVAEPVPPPLL 165
           GA  PPP PP  G + +  P PPPLL
Sbjct: 574 GAPLPPPPPPLPGMMGIPPPPPPPLL 599

>TOM40_MOUSE (Q9QYA2) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog)
          Length = 359

 Score = 32.3 bits (72), Expect = 0.85
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
 Frame = -3

Query: 269 GGLLACCSSGAGHPPPTPPCIGFVMVAEPVPPP-------LLSCSIRGESMAGLGQEDTP 111
           G +LA  S  A  PPPTP  +G      P PPP         S ++   S  G G E TP
Sbjct: 2   GNVLAASSPPARPPPPTPSLVGL-----PPPPPSPPRSLCRRSAALGTGSSTGRGSERTP 56

>KLF2_HUMAN (Q9Y5W3) Krueppel-like factor 2 (Lung krueppel-like factor)|
          Length = 355

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = -3

Query: 266 GLLACCSSGAGHPPPTPPCIGFVMVAEPVPPP-------LLSCSIRGESMAGLGQEDTPS 108
           GL    +  A  PPP PP   F       PPP       L+S  +R E  A LG    P+
Sbjct: 52  GLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPLG----PA 107

Query: 107 LSLCLKLVGNGGRCVQSWGWEVDRGGGDDC 18
           L     L+   GR V++   E D GGG  C
Sbjct: 108 LHGRF-LLAPPGRLVKAEPPEADGGGGYGC 136

>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 248 SSGAGHPPPTPPCIGFVMVAEPVPPP 171
           S+ +G PPP P  +G   VA P PPP
Sbjct: 353 SAPSGPPPPPPSVLGVGPVAPPPPPP 378

>WASP_MOUSE (P70315) Wiskott-Aldrich syndrome protein homolog (WASp)|
          Length = 520

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -3

Query: 230 PPPTPPCIGFVMVAEPVPPPLLSCSIRGESMA 135
           PPP PPC G    + P PPPL    + G S A
Sbjct: 417 PPPPPPCPG----SGPAPPPLPPTPVSGGSPA 444

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 7   LRHLQSSPPPRSTSHPQLCTHLPPFPTNLRQREREGVSSCPRPAMDSPRMEQ 162
           L++    PPP     P     LPP P+N + +    + S P P   SP   Q
Sbjct: 339 LQNSTQDPPPSQHCIPLQNHGLPPAPSNAQSQHCSPIQSHPSPLTVSPNQSQ 390

>P73L_RAT (Q9JJP6) Tumor protein p73-like (p73L) (p63)|
           (Transformation-related protein 63) (TP63) (Keratinocyte
           transcription factor KET)
          Length = 680

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   NRLRHLQSSPPPRSTSHPQLCTHLPPFPTN---LRQREREGVSSC 126
           N L   Q+ PPP S      CT  PP+PT+   +    R G SSC
Sbjct: 517 NGLSPTQALPPPLSMPSTSHCTPPPPYPTDCSIVSFLARLGCSSC 561

>P73L_MOUSE (O88898) Tumor protein p73-like (p73L) (p63)|
           (Transformation-related protein 63)
          Length = 680

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   NRLRHLQSSPPPRSTSHPQLCTHLPPFPTN---LRQREREGVSSC 126
           N L   Q+ PPP S      CT  PP+PT+   +    R G SSC
Sbjct: 517 NGLSPTQALPPPLSMPSTSHCTPPPPYPTDCSIVSFLARLGCSSC 561

>P73L_HUMAN (Q9H3D4) Tumor protein p73-like (p73L) (p63) (Tumor protein 63)|
           (TP63) (p51) (p40) (Keratinocyte transcription factor
           KET) (Chronic ulcerative stomatitis protein) (CUSP)
          Length = 680

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 1   NRLRHLQSSPPPRSTSHPQLCTHLPPFPTN---LRQREREGVSSC 126
           N L   Q+ PPP S      CT  PP+PT+   +    R G SSC
Sbjct: 517 NGLSPTQALPPPLSMPSTSHCTPPPPYPTDCSIVSFLARLGCSSC 561

>ENAH_HUMAN (Q8N8S7) Protein enabled homolog|
          Length = 591

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 230 PPPTPPCIGFVMVAEPVPPPLLSCSIRGESMAGLGQEDTPSLSLCLKLVG 81
           PPP PP +   +   P PPP       G  +A + +++ P   L   + G
Sbjct: 349 PPPPPPPLPNQVPPPPPPPPAPPLPASGFFLASMSEDNRPLTGLAAAIAG 398

>PRA_MYCTU (O53426) Proline-rich antigen homolog|
          Length = 240

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3

Query: 248 SSGAGHPPPTPPCIGFVMVAEPVPPP 171
           SSG+G+PPP PP  G    A P PPP
Sbjct: 44  SSGSGYPPPPPPPGG---GAYPPPPP 66

>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)|
          Length = 597

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 269 GGLLACCSSGAGHPPPTPPCIGFVMVAEPVP 177
           GG  +CCSS +  PPP P      M A P P
Sbjct: 319 GGGGSCCSSKSSQPPPMPQMSPNAMQAPPQP 349

>CBLE_VISAL (P81859) Chitin-binding lectin|
          Length = 49

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 128 GQEDTPSLSLCLKLVGNGGRCVQSWGW 48
           G+E TP   LC     N GRC   WGW
Sbjct: 6   GREATPPGKLC-----NDGRCCSQWGW 27

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 24.6 bits (52), Expect(2) = 4.8
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 230 PPPTPPCIGFVMVAEPVPPPLLSCSIRGESMAGLGQEDTPSLSLCLKLVGNG 75
           PP  PP  G   +A P PPP        +  AG G    P +    K+ G G
Sbjct: 598 PPAPPPNQGMNNMATPPPPP--------QGAAGGGYPMPPHMHGGYKMGGPG 641



 Score = 23.5 bits (49), Expect(2) = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 269 GGLLACCSSGAGHPPPTPP 213
           GG +     GAG PPP PP
Sbjct: 545 GGPMQQPPVGAGGPPPMPP 563

>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -3

Query: 242 GAGHPPPTPPCIGFVMVAEPVPPPL 168
           G G PPP PP  G V V  P PPPL
Sbjct: 680 GTGIPPPPPPLPGSVGV--PPPPPL 702

>RL1_RHOPA (Q6N4R5) 50S ribosomal protein L1 (RRP-L1)|
          Length = 228

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 157 PSVGNPWRVLGKKTLLPSPSASS-WLEMVGGVCKAGGGK---WIEEAATIASGAG 5
           P VG   +VLG + ++P+P   +  +++ G V  A GG     +E+A  I +G G
Sbjct: 120 PLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIIQAGVG 174

>CAP2_HUMAN (P40123) Adenylyl cyclase-associated protein 2 (CAP 2)|
          Length = 477

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -3

Query: 248 SSGAGHPPPTPPCIGFVMVAEPVPPPLLSCSIRGESMAGLGQEDTPSLSLCLKLVGNG 75
           SSG G PPP PP      +  P PPPL           G  +E +PS S     +  G
Sbjct: 226 SSGPGLPPPPPP------LPPPGPPPLF-------ENEGKKEESSPSRSALFAQLNQG 270

>OXR1_EMENI (Q5B8X6) Oxidation resistance protein 1|
          Length = 393

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 297 EPKQRAPHTDGVGRGGSSSSNAGLQRQQNARFR 395
           +PK  APHT G+ +GG  ++N+G       RF+
Sbjct: 296 QPKSLAPHTHGLAQGG--ATNSGTTTPDRIRFK 326

>RL1_BRAJA (Q89J70) 50S ribosomal protein L1|
          Length = 230

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 157 PSVGNPWRVLGKKTLLPSPSASS-WLEMVGGVCKAGGGK---WIEEAATIASGAG 5
           P VG   +VLG + L+P+P   +  +++ G V  A GG     +E+A  + +G G
Sbjct: 121 PLVGRLGKVLGPRGLMPNPKIGTVTMDVTGAVKGAKGGSVEFRVEKAGILQAGVG 175

>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 16  LQSSPPPRSTSHPQLCTHLPPFPTNLRQREREG 114
           + SS PP S + P+L    PP    LR R  EG
Sbjct: 181 VSSSTPPSSPAPPELTPRTPPQTPRLRLRRAEG 213

>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2|
           (WASP-family protein member 2) (WAVE-2 protein)
          Length = 497

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
 Frame = -3

Query: 233 HPPPTPPCI-------GFVMVAEPVPPPLLSCSIRGESMAGLGQEDTP 111
           HPPP PP         GF     P PPP +S      SM G G   TP
Sbjct: 299 HPPPAPPLSSPPGPKPGFAPPPAPPPPPPMSVPPPLPSM-GFGSPGTP 345

>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)|
          Length = 846

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 20/51 (39%), Positives = 22/51 (43%)
 Frame = +3

Query: 51  PPALHTPPTISNQLEAEGEGRSVFLPKTRHGFPTDGAGEQRRRYWFCYHHK 203
           PP  H PP    +L   G G     PK RHG  TDG     R+     HHK
Sbjct: 739 PPQKHKPPDKPPRLCKTGPGPPPLPPKQRHG-STDGKVSAPRQ---SEHHK 785

>TOM40_HUMAN (O96008) Probable mitochondrial import receptor subunit TOM40|
           homolog (Translocase of outer membrane 40 kDa subunit
           homolog) (Haymaker protein) (p38.5)
          Length = 361

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
 Frame = -3

Query: 269 GGLLACCSSGAGHPPPTPPCIGFVMVAEPVPP----PLLSCSIRGESMAGLGQEDTP 111
           G +LA  S  AG PPP  P +  +    P PP    P L  S+   +      E TP
Sbjct: 2   GNVLAASSPPAGPPPPPAPALVGLPPPPPSPPGFTLPPLGGSLGAGTSTSRSSERTP 58

>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian
           branch point-binding protein mBBP) (BBP)
          Length = 639

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 230 PPPTPPCIGFVMVAEPVPPPLLSCSIRGESMAGLGQEDTPSLSL 99
           PPP PP    +M A P PPP         +M G+G    P   +
Sbjct: 585 PPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFGM 628

>RL1_SILPO (Q5LMQ0) 50S ribosomal protein L1|
          Length = 232

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 157 PSVGNPWRVLGKKTLLPSPSASS-WLEMVGGVCKAGGGK---WIEEAATIASGAG 5
           P VG   ++LG + L+P+P   +  +++   V  A GG+    +E+A  I +G G
Sbjct: 122 PVVGRLGKILGPRNLMPNPKVGTVTMDVAQAVQNAKGGEVQFKVEKAGVIHAGVG 176

>HA2Q_HUMAN (P20036) HLA class II histocompatibility antigen, DP alpha chain|
           precursor (HLA-SB alpha chain) (MHC class II DP3-alpha)
           (DP(W3)) (DP(W4))
          Length = 260

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 45  FPPPALHTPPTISNQLEAEGEGRSVFLPKTRHGF 146
           F PP L+     + +L  EG   S+FLP+T + F
Sbjct: 143 FFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSF 176

>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 248 SSGAGHPPPTPPCIGFVMVAEPVPPP 171
           S+ +G PPP PP      VA P PPP
Sbjct: 353 SAPSGPPPPPPPLSVSGSVAPPPPPP 378

>RL1_AGRT5 (Q8UE05) 50S ribosomal protein L1|
          Length = 231

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -1

Query: 157 PSVGNPWRVLGKKTLLPSPSASSWLEMVGGVCKAGGGK----WIEEAATIASGAG 5
           P VG   +VLG + ++P+P   +    V G  KA  G      +E+A  + +G G
Sbjct: 122 PLVGRLGKVLGPRGMMPNPKVGTVTMDVAGAVKASKGGAVEFRVEKAGIVHAGIG 176

>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4)
          Length = 1147

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 230 PPPTPPCIGFVMVAEPVPPPLLSCSIRGESMAGLGQEDTPSLSL 99
           P P PP    V +  P  PP+   SI   ++AG+ ++ T  LS+
Sbjct: 741 PGPPPPITPPVSIPPPHTPPI---SIPNSTIAGINEDTTKDLSI 781

>RL1_NITWN (Q3SSY3) 50S ribosomal protein L1|
          Length = 230

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 157 PSVGNPWRVLGKKTLLPSPSASS-WLEMVGGVCKAGGGK---WIEEAATIASGAG 5
           P VG   +VLG + ++P+P   +  +++ G V  A GG     +E+A  + +G G
Sbjct: 121 PLVGRLGKVLGPRGMMPNPKIGTVTMDVAGAVKGAKGGSVEFRVEKAGIVQAGIG 175

>JAD1A_HUMAN (P29375) Jumonji/ARID domain-containing protein 1A|
            (Retinoblastoma-binding protein 2) (RBBP-2)
          Length = 1722

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 37   RSTSHPQLCTHLPPFPTNLRQREREGVSSCPRPAMD 144
            ++ ++P L  HLP F  +   R    VSS PR  MD
Sbjct: 1302 KAAANPDLQGHLPSFQQSAFNRVVSSVSSSPRQTMD 1337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,921,287
Number of Sequences: 219361
Number of extensions: 1777276
Number of successful extensions: 5907
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 5063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5840
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)