ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart20d04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full insert sequence Length = 1418 Score = 426 bits (215), Expect = e-116 Identities = 356/403 (88%) Strand = Plus / Plus Query: 201 gcggagatgtcggacgcgctgatcaacggcctcgccggcgccggtggcgggatcgtcgcc 260 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 64 gcggagatgtcggacgcgctgatcaacggcgtcgccggcgccggcggcgggatcatcgcc 123 Query: 261 cagctcctcacctaccccctccagactgtgaacgcgcggcagcagacggagcgggacccc 320 ||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||| Sbjct: 124 cagctcctcacctacccgctccaaaccgtgaacgcgcggcagcagacggagcgcgacccc 183 Query: 321 tccaaaccggcgttcaaggacggcgccgtccgccagatgtgcctggtggtgcaaaacgag 380 ||||| ||||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct: 184 tccaagccggcgttcaaggacggcgccgtccgccagatgtgcctggtggtgaagcatgaa 243 Query: 381 gggtgggagcggctctacggcggcctggcgccctcgctcgtcggcaccgcggcgtctcag 440 |||||||||||||| ||||||||||| ||||||||| || ||||| ||||| || ||| Sbjct: 244 gggtgggagcggctgtacggcggcctcatgccctcgcttgttggcactgcggcctcccag 303 Query: 441 ggtgtctactacttcttctaccaaatattccggagcagggcggaggcagcatcccttcgg 500 ||||||||||| | ||||||||| ||||||||||||||||||||||| || | || | | Sbjct: 304 ggtgtctactattacttctaccagatattccggagcagggcggaggccgcggctctccag 363 Query: 501 cggtccattagaggaattggggacgggtctgtcgggatgttccaatcactcactgtcgct 560 || |||| |||||||| || || || || ||||||||| ||||||| |||||||||||| Sbjct: 364 cgatccaggagaggaatcggcgatggatccgtcgggatgctccaatccctcactgtcgct 423 Query: 561 gcactttctggatgcgtcaatgtacttctaacgaaccccattt 603 || ||||||||||| || ||||||||||| || ||||| |||| Sbjct: 424 gcgctttctggatgtgttaatgtacttctcacaaacccaattt 466
>ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 207 atgtcggacgcgctgatcaacggcctcgccggcgccggtggcgggatcgtcgcccagctc 266 |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| Sbjct: 1 atgtcggacgcgctgatcaacggcgtcgccggcgccggcggcgggatcatcgcccagctc 60 Query: 267 ctcacctaccccctccagactgtgaacgcgcggcagcagacggagcgggacccctccaaa 326 ||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct: 61 ctcacctacccgctccaaaccgtgaacgcgcggcagcagacggagcgcgacccctccaag 120 Query: 327 ccggcgttcaaggacggcgccgtccgccagatgtgcctggtggtgcaaaacgaggggtgg 386 ||||||||||||||||||||||||||||||||||||||||||||| | | || |||||| Sbjct: 121 ccggcgttcaaggacggcgccgtccgccagatgtgcctggtggtgaagcatgaagggtgg 180 Query: 387 gagcggctctacggcggcctggcgccctcgctcgtcggcaccgcggcgtctcagggtgtc 446 |||||||| ||||||||||| ||||||||| || ||||| ||||| || ||||||||| Sbjct: 181 gagcggctgtacggcggcctcatgccctcgcttgttggcactgcggcctcccagggtgtc 240 Query: 447 tactacttcttctaccaaatattccggagcagggcggaggcagcatcccttcggcggtcc 506 ||||| | ||||||||| ||||||||||||||||||||||| || | || | ||| ||| Sbjct: 241 tactattacttctaccagatattccggagcagggcggaggccgcggctctccagcgatcc 300 Query: 507 attagaggaattggggacgggtctgtcgggatgttccaatcactcactgtcgctgcactt 566 | |||||||| || || || || ||||||||| ||||||| |||||||||||||| ||| Sbjct: 301 aggagaggaatcggcgatggatccgtcgggatgctccaatccctcactgtcgctgcgctt 360 Query: 567 tctggatgcgtcaatgtacttctaacgaaccccattt 603 |||||||| || ||||||||||| || ||||| |||| Sbjct: 361 tctggatgtgttaatgtacttctcacaaacccaattt 397
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 145 bits (73), Expect = 2e-31 Identities = 79/81 (97%) Strand = Plus / Plus Query: 288 gtgaacgcgcggcagcagacggagcgggacccctccaaaccggcgttcaaggacggcgcc 347 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 8722460 gtgaacgcgcggcagcagacggagcgcgacccctccaagccggcgttcaaggacggcgcc 8722519 Query: 348 gtccgccagatgtgcctggtg 368 ||||||||||||||||||||| Sbjct: 8722520 gtccgccagatgtgcctggtg 8722540 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 201 gcggagatgtcggacgcgctgatcaacggcctcgccggcgccggtggcgggatcgtcgcc 260 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 8722278 gcggagatgtcggacgcgctgatcaacggcgtcgccggcgccggcggcgggatcatcgcc 8722337 Query: 261 cagctcctcacctaccccctcca 283 ||||||||||||||||| ||||| Sbjct: 8722338 cagctcctcacctacccgctcca 8722360 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 439 agggtgtctactacttcttctaccaaatattccggagcagggcggaggcagcatcccttc 498 ||||||||||||| | ||||||||| ||||||||||||||||||||||| || | || | Sbjct: 8722829 agggtgtctactattacttctaccagatattccggagcagggcggaggccgcggctctcc 8722888 Query: 499 ggcggtccattagaggaattggggacgggtctgtcgggatgttccaatcactcactgtcg 558 ||| |||| |||||||| || || || || ||||||||| ||||||| |||||||||| Sbjct: 8722889 agcgatccaggagaggaatcggcgatggatccgtcgggatgctccaatccctcactgtcg 8722948 Query: 559 ctgcactttctgg 571 |||| |||||||| Sbjct: 8722949 ctgcgctttctgg 8722961 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 381 gggtgggagcggctctacggcggcctggcgccctcgctcgtcggcaccgcggc 433 |||||||||||||| ||||||||||| ||||||||| || ||||| ||||| Sbjct: 8722676 gggtgggagcggctgtacggcggcctcatgccctcgcttgttggcactgcggc 8722728 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||| |||||||||||||||||| Sbjct: 27117639 ccacgtctcctcctcctccgtctc 27117616 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 11008598 ccacgcctcctcctcctccctctc 11008575
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 145 bits (73), Expect = 2e-31 Identities = 79/81 (97%) Strand = Plus / Plus Query: 288 gtgaacgcgcggcagcagacggagcgggacccctccaaaccggcgttcaaggacggcgcc 347 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 66111 gtgaacgcgcggcagcagacggagcgcgacccctccaagccggcgttcaaggacggcgcc 66170 Query: 348 gtccgccagatgtgcctggtg 368 ||||||||||||||||||||| Sbjct: 66171 gtccgccagatgtgcctggtg 66191 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 201 gcggagatgtcggacgcgctgatcaacggcctcgccggcgccggtggcgggatcgtcgcc 260 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 65929 gcggagatgtcggacgcgctgatcaacggcgtcgccggcgccggcggcgggatcatcgcc 65988 Query: 261 cagctcctcacctaccccctcca 283 ||||||||||||||||| ||||| Sbjct: 65989 cagctcctcacctacccgctcca 66011 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 439 agggtgtctactacttcttctaccaaatattccggagcagggcggaggcagcatcccttc 498 ||||||||||||| | ||||||||| ||||||||||||||||||||||| || | || | Sbjct: 66480 agggtgtctactattacttctaccagatattccggagcagggcggaggccgcggctctcc 66539 Query: 499 ggcggtccattagaggaattggggacgggtctgtcgggatgttccaatcactcactgtcg 558 ||| |||| |||||||| || || || || ||||||||| ||||||| |||||||||| Sbjct: 66540 agcgatccaggagaggaatcggcgatggatccgtcgggatgctccaatccctcactgtcg 66599 Query: 559 ctgcactttctgg 571 |||| |||||||| Sbjct: 66600 ctgcgctttctgg 66612 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 381 gggtgggagcggctctacggcggcctggcgccctcgctcgtcggcaccgcggc 433 |||||||||||||| ||||||||||| ||||||||| || ||||| ||||| Sbjct: 66327 gggtgggagcggctgtacggcggcctcatgccctcgcttgttggcactgcggc 66379
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 145 bits (73), Expect = 2e-31 Identities = 79/81 (97%) Strand = Plus / Plus Query: 288 gtgaacgcgcggcagcagacggagcgggacccctccaaaccggcgttcaaggacggcgcc 347 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 8720295 gtgaacgcgcggcagcagacggagcgcgacccctccaagccggcgttcaaggacggcgcc 8720354 Query: 348 gtccgccagatgtgcctggtg 368 ||||||||||||||||||||| Sbjct: 8720355 gtccgccagatgtgcctggtg 8720375 Score = 133 bits (67), Expect = 7e-28 Identities = 79/83 (95%) Strand = Plus / Plus Query: 201 gcggagatgtcggacgcgctgatcaacggcctcgccggcgccggtggcgggatcgtcgcc 260 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct: 8720113 gcggagatgtcggacgcgctgatcaacggcgtcgccggcgccggcggcgggatcatcgcc 8720172 Query: 261 cagctcctcacctaccccctcca 283 ||||||||||||||||| ||||| Sbjct: 8720173 cagctcctcacctacccgctcca 8720195 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 439 agggtgtctactacttcttctaccaaatattccggagcagggcggaggcagcatcccttc 498 ||||||||||||| | ||||||||| ||||||||||||||||||||||| || | || | Sbjct: 8720664 agggtgtctactattacttctaccagatattccggagcagggcggaggccgcggctctcc 8720723 Query: 499 ggcggtccattagaggaattggggacgggtctgtcgggatgttccaatcactcactgtcg 558 ||| |||| |||||||| || || || || ||||||||| ||||||| |||||||||| Sbjct: 8720724 agcgatccaggagaggaatcggcgatggatccgtcgggatgctccaatccctcactgtcg 8720783 Query: 559 ctgcactttctgg 571 |||| |||||||| Sbjct: 8720784 ctgcgctttctgg 8720796 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 381 gggtgggagcggctctacggcggcctggcgccctcgctcgtcggcaccgcggc 433 |||||||||||||| ||||||||||| ||||||||| || ||||| ||||| Sbjct: 8720511 gggtgggagcggctgtacggcggcctcatgccctcgcttgttggcactgcggc 8720563 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||| |||||||||||||||||| Sbjct: 27208962 ccacgtctcctcctcctccgtctc 27208939 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 11005361 ccacgcctcctcctcctccctctc 11005338
>dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E12, full insert sequence Length = 1329 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgtgaacgcgcgg 299 |||||||| || ||| |||||||| || |||||||||||||||||||||||||| | ||| Sbjct: 179 gccggtggtggcatcatcgcccagatcatcacctaccccctccagactgtgaacacccgg 238 Query: 300 cagcagac 307 |||||||| Sbjct: 239 cagcagac 246
>dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050L01, full insert sequence Length = 1354 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgtgaacgcgcgg 299 |||||||| || ||| |||||||| || |||||||||||||||||||||||||| | ||| Sbjct: 186 gccggtggtggcatcatcgcccagatcatcacctaccccctccagactgtgaacacccgg 245 Query: 300 cagcagac 307 |||||||| Sbjct: 246 cagcagac 253
>ref|XM_464736.1| Oryza sativa (japonica cultivar-group), mRNA Length = 822 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgtgaacgcgcgg 299 |||||||| || ||| |||||||| || ||||||||||||||||||| |||||| | ||| Sbjct: 55 gccggtggtggcatcatcgcccagatcatcacctaccccctccagaccgtgaacacccgg 114 Query: 300 cagcagac 307 |||||||| Sbjct: 115 cagcagac 122
>dbj|AK059462.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D01, full insert sequence Length = 1400 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgtgaacgcgcgg 299 |||||||| || ||| |||||||| || ||||||||||||||||||| |||||| | ||| Sbjct: 75 gccggtggtggcatcatcgcccagatcatcacctaccccctccagaccgtgaacacccgg 134 Query: 300 cagcagac 307 |||||||| Sbjct: 135 cagcagac 142
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgt 289 |||||||| || ||| |||||||| || |||||||||||||||||||||| Sbjct: 157001 gccggtggtggcatcatcgcccagatcatcacctaccccctccagactgt 156952
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgt 289 |||||||| || ||| |||||||| || |||||||||||||||||||||| Sbjct: 33182 gccggtggtggcatcatcgcccagatcatcacctaccccctccagactgt 33133
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagactgt 289 |||||||| || ||| |||||||| || |||||||||||||||||||||| Sbjct: 19437775 gccggtggtggcatcatcgcccagatcatcacctaccccctccagactgt 19437726 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 cggcctcgccggcgccggtggcggg 251 |||||||||||||||||| |||||| Sbjct: 18924716 cggcctcgccggcgccgggggcggg 18924740 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 |||| ||||||||||||||||||| Sbjct: 13539585 ccactcctcctcctcctccgtctc 13539562
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagac 286 |||||||| || ||| |||||||| || ||||||||||||||||||| Sbjct: 7018280 gccggtggtggcatcatcgcccagatcatcacctaccccctccagac 7018326
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagac 286 |||||||| || ||| |||||||| || ||||||||||||||||||| Sbjct: 21699 gccggtggtggcatcatcgcccagatcatcacctaccccctccagac 21745
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 240 gccggtggcgggatcgtcgcccagctcctcacctaccccctccagac 286 |||||||| || ||| |||||||| || ||||||||||||||||||| Sbjct: 111902 gccggtggtggcatcatcgcccagatcatcacctaccccctccagac 111948
>gb|AC158803.11| Mus musculus 10 BAC RP24-186E11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168941 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 56 gagaccacgcctcctcctcctccgtctc 83 |||||||||||||||||||||| ||||| Sbjct: 152164 gagaccacgcctcctcctcctctgtctc 152191
>gb|AC159709.8| Mus musculus 10 BAC RP23-136O17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202716 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 56 gagaccacgcctcctcctcctccgtctc 83 |||||||||||||||||||||| ||||| Sbjct: 181644 gagaccacgcctcctcctcctctgtctc 181617
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 ggccgaggcggcgggggtctcg 146 |||||||||||||||||||||| Sbjct: 115678 ggccgaggcggcgggggtctcg 115699
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 328 cggcgttcaaggacggcgccgtccgc 353 ||||||||||||||||| |||||||| Sbjct: 2395743 cggcgttcaaggacggcaccgtccgc 2395768
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 acggcctcgccggcgccggtggcgg 250 |||||| |||||||||||||||||| Sbjct: 134222 acggccgcgccggcgccggtggcgg 134198
>ref|XM_483340.1| Oryza sativa (japonica cultivar-group), mRNA Length = 884 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 tcaacggcctcgccggcgccg 243 ||||||||||||||||||||| Sbjct: 195 tcaacggcctcgccggcgccg 215
>ref|XM_476110.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1422 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 acggcctcgccggcgccggtggcgg 250 |||||| |||||||||||||||||| Sbjct: 557 acggccgcgccggcgccggtggcgg 533
>ref|NM_191856.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1242 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcgg 250 ||||||||||||||||||||| Sbjct: 270 cctcgccggcgccggtggcgg 290
>ref|NM_009386.1| Mus musculus tight junction protein 1 (Tjp1), mRNA Length = 7046 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgt 80 ||||||||||||||||||||| Sbjct: 4668 ccacgcctcctcctcctccgt 4688
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12, complete sequence Length = 172647 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 acggcctcgccggcgccggtggcgg 250 |||||| |||||||||||||||||| Sbjct: 17008 acggccgcgccggcgccggtggcgg 16984
>gb|AC091206.3| Drosophila melanogaster 3L BAC RP98-19M9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178019 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 cgcctcctcctcctccgtctc 83 ||||||||||||||||||||| Sbjct: 8370 cgcctcctcctcctccgtctc 8390
>gb|AC010018.6| Drosophila melanogaster 3L BAC RP98-17M19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172284 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgcctcctcctcctccgtctc 83 ||||||||||||||||||||| Sbjct: 117839 cgcctcctcctcctccgtctc 117819
>dbj|AB183488.1| Oryzias latipes DNA, MHC class I region Length = 540982 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ctcctcctcctccgtctctcc 86 ||||||||||||||||||||| Sbjct: 400012 ctcctcctcctccgtctctcc 399992
>gb|BC013769.1| Mus musculus tight junction protein 1, mRNA (cDNA clone IMAGE:2650771), partial cds Length = 3702 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgt 80 ||||||||||||||||||||| Sbjct: 1243 ccacgcctcctcctcctccgt 1263
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 tcaacggcctcgccggcgccg 243 ||||||||||||||||||||| Sbjct: 25622201 tcaacggcctcgccggcgccg 25622181 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 11547647 ccacgcctcctcctcctccg 11547628
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 acggcctcgccggcgccggtggcgg 250 |||||| |||||||||||||||||| Sbjct: 6186653 acggccgcgccggcgccggtggcgg 6186629
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cctcgccggcgccggtggcgg 250 ||||||||||||||||||||| Sbjct: 30333725 cctcgccggcgccggtggcgg 30333705
>dbj|BA000027.2| Oryzias latipes DNA, MHC Class I Region Length = 425935 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 ctcctcctcctccgtctctcc 86 ||||||||||||||||||||| Sbjct: 404383 ctcctcctcctccgtctctcc 404363
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cctcgccggcgccggtggcgg 250 ||||||||||||||||||||| Sbjct: 122044 cctcgccggcgccggtggcgg 122024
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 230 cctcgccggcgccggtggcgg 250 ||||||||||||||||||||| Sbjct: 19452 cctcgccggcgccggtggcgg 19432
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 383 gtgggagcggctctacggcggcctg 407 |||||||||||||| |||||||||| Sbjct: 4845209 gtgggagcggctctccggcggcctg 4845185 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 4587782 cctcgccggcgccggtggcg 4587801
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 cgccggtggcgggatcgtcgc 259 ||||||||||||||||||||| Sbjct: 5787991 cgccggtggcgggatcgtcgc 5788011
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 tcaacggcctcgccggcgccg 243 ||||||||||||||||||||| Sbjct: 108892 tcaacggcctcgccggcgccg 108872
>dbj|AK099705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075K02, full insert sequence Length = 1595 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 227 cggcctcgccggcgccggtggcggg 251 |||||||||||||||||| |||||| Sbjct: 124 cggcctcgccggcgccgggggcggg 148
>dbj|AK108596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E01, full insert sequence Length = 884 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 tcaacggcctcgccggcgccg 243 ||||||||||||||||||||| Sbjct: 195 tcaacggcctcgccggcgccg 215
>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence Length = 193738 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgt 80 ||||||||||||||||||||| Sbjct: 171707 ccacgcctcctcctcctccgt 171687
>gb|AC122222.6| Mus musculus BAC clone RP23-128D11 from 7, complete sequence Length = 212225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgt 80 ||||||||||||||||||||| Sbjct: 41358 ccacgcctcctcctcctccgt 41338
>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete sequence Length = 317354 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cgcctcctcctcctccgtctc 83 ||||||||||||||||||||| Sbjct: 29097 cgcctcctcctcctccgtctc 29077
>dbj|D14340.1|MUSZO1 Mus musculus mRNA for ZO-1, complete cds Length = 7046 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgt 80 ||||||||||||||||||||| Sbjct: 4668 ccacgcctcctcctcctccgt 4688
>ref|NM_105352.1| Arabidopsis thaliana nucleic acid binding AT1G66810 mRNA, complete cds Length = 933 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tcctcctcctccgtctctcc 86 |||||||||||||||||||| Sbjct: 409 tcctcctcctccgtctctcc 428
>ref|XM_481319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2421 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 51 ccacgcctcctcctcctccg 70
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 cggacgcgctgatcaacggcctcg 234 ||||||||||||||| |||||||| Sbjct: 3000176 cggacgcgctgatcatcggcctcg 3000199
>ref|XM_478887.1| Oryza sativa (japonica cultivar-group), mRNA Length = 723 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 128 ccacgcctcctcctcctccg 109
>ref|XM_473722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 accaccacgccgcggcggcg 182 |||||||||||||||||||| Sbjct: 38 accaccacgccgcggcggcg 57
>gb|AC165245.2| Mus musculus BAC clone RP24-376N22 from chromosome 9, complete sequence Length = 217074 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctctccca 88 |||| ||||||||||||||||||| Sbjct: 134159 cctcttcctcctccgtctctccca 134136
>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete sequence Length = 121849 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||| |||||||||||||||||| Sbjct: 61252 ccacgtctcctcctcctccgtctc 61275
>gb|AY559047.1| Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds Length = 1173 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 333 ccacgcctcctcctcctccg 314
>gb|AY343494.2| Oryza sativa (indica cultivar-group) putative pectinesterase mRNA, complete cds Length = 1302 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 56 ccacgcctcctcctcctccctctc 79
>emb|Z82076.1|CEW07G1 Caenorhabditis elegans Cosmid W07G1, complete sequence Length = 36480 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 27907 cctcctcctcctccgtctct 27926
>gb|AC125375.3| Mus musculus BAC clone RP23-464K21 from chromosome 14, complete sequence Length = 198193 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 cagctcctcacctaccccctccag 284 ||||||||||||| |||||||||| Sbjct: 91084 cagctcctcacctcccccctccag 91061
>gb|AC124748.5| Mus musculus BAC clone RP23-261I7 from chromosome 17, complete sequence Length = 184968 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctcctcctcctccgtctctcccac 89 ||||||||||||| |||||||||| Sbjct: 160828 ctcctcctcctccttctctcccac 160805
>gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosome 17, complete sequence Length = 181626 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 45291 cctcctcctcctccgtctct 45272
>gb|AC124693.4| Mus musculus BAC clone RP24-167O14 from chromosome 19, complete sequence Length = 160363 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 32085 cctcctcctcctccgtctct 32066
>gb|AC122274.4| Mus musculus BAC clone RP23-228J3 from 14, complete sequence Length = 192135 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 cagctcctcacctaccccctccag 284 ||||||||||||| |||||||||| Sbjct: 148078 cagctcctcacctcccccctccag 148101
>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence Length = 236182 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctctccca 88 |||||||||||||| ||||||||| Sbjct: 101564 cctcctcctcctccttctctccca 101541
>gb|AC104057.4| Homo sapiens BAC clone RP13-157F18 from 7, complete sequence Length = 196523 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 67330 cctcctcctcctccgtctct 67349
>emb|AL831732.18| Human DNA sequence from clone RP11-396L10 on chromosome 1, complete sequence Length = 38529 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 37269 cctcctcctcctccgtctct 37250
>emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chromosome 1 Contains the 3' end of the NPHP4 gene for nephronophthisis 4, complete sequence Length = 72610 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 740 cctcctcctcctccgtctct 721
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 124524 ccacgcctcctcctcctccctctc 124547
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 accaccacgccgcggcggcg 182 |||||||||||||||||||| Sbjct: 1081 accaccacgccgcggcggcg 1062
>gb|AC092422.3| Homo sapiens chromosome 3 clone RP11-537O8, complete sequence Length = 188643 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 262 agctcctcacctaccccctccaga 285 ||||||||||| |||||||||||| Sbjct: 131011 agctcctcaccaaccccctccaga 130988
>ref|NM_001027227.2| Caenorhabditis elegans W07G1.5a (W07G1.5) mRNA, complete cds Length = 1354 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 1217 cctcctcctcctccgtctct 1198
>ref|NM_001027228.2| Caenorhabditis elegans W07G1.5b (W07G1.5) mRNA, complete cds Length = 1390 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 1253 cctcctcctcctccgtctct 1234
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 accaccacgccgcggcggcg 182 |||||||||||||||||||| Sbjct: 29864329 accaccacgccgcggcggcg 29864310
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 24878762 cctcgccggcgccggtggcg 24878781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 23506392 ccacgcctcctcctcctccg 23506373 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 cctcctcctccgtctctcccacgg 91 ||||||||||| |||||||||||| Sbjct: 12436927 cctcctcctccctctctcccacgg 12436950
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctctccca 88 |||||||||| ||||||||||||| Sbjct: 6654076 cctcctcctcatccgtctctccca 6654053
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 62394 cctcgccggcgccggtggcg 62413
>gb|AC013288.7|AC013288 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence Length = 96899 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tcctcctcctccgtctctcc 86 |||||||||||||||||||| Sbjct: 28679 tcctcctcctccgtctctcc 28698
>gb|AC009311.3| Homo sapiens BAC clone RP11-311L3 from 2, complete sequence Length = 160625 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 cctcctcctcctccgtctctccca 88 ||||||||||||| |||||||||| Sbjct: 25332 cctcctcctcctctgtctctccca 25355
>gb|AE004781.1| Pseudomonas aeruginosa PAO1, section 342 of 529 of the complete genome Length = 10916 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ctacggcggcctggcgccct 414 |||||||||||||||||||| Sbjct: 3214 ctacggcggcctggcgccct 3233
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 101781 ccacgcctcctcctcctccg 101762
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 7918 ccacgcctcctcctcctccg 7899
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctctccca 88 |||||||||| ||||||||||||| Sbjct: 88202 cctcctcctcatccgtctctccca 88179
>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0613B07 Length = 191756 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 cctcctcctccgtctctcccacgg 91 ||||||||||| |||||||||||| Sbjct: 81209 cctcctcctccctctctcccacgg 81232
>dbj|AP004185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1301_C12 Length = 128396 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 66785 ccacgcctcctcctcctccg 66766
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 113213 cctcgccggcgccggtggcg 113232
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 126289 ccacgcctcctcctcctccg 126270
>dbj|AP006562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1175F05 Length = 126842 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 |||| ||||||||||||||||||| Sbjct: 114513 ccactcctcctcctcctccgtctc 114490
>dbj|AK121889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105B17, full insert sequence Length = 1130 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 326 ccacgcctcctcctcctccg 307
>dbj|AK120164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031E22, full insert sequence Length = 4010 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccg 79 |||||||||||||||||||| Sbjct: 66 ccacgcctcctcctcctccg 85
>dbj|AK109579.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-A03, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 527 cctcgccggcgccggtggcg 546
>dbj|AK100728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117F04, full insert sequence Length = 1436 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 72 ccacgcctcctcctcctccctctc 95
>dbj|AK072902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147E13, full insert sequence Length = 1256 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 accaccacgccgcggcggcg 182 |||||||||||||||||||| Sbjct: 63 accaccacgccgcggcggcg 82
>gb|AC154759.2| Mus musculus BAC clone RP24-408G4 from 14, complete sequence Length = 145942 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 gcctcctcctcctccgtctctccc 87 ||||||||||||||| |||||||| Sbjct: 112338 gcctcctcctcctccctctctccc 112315
>gb|U79567.1|SMU79567 Sminthopsis macroura RBM1 mRNA, complete cds Length = 1639 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 gggtctcttcggggaagaccacca 169 ||||||||||||||| |||||||| Sbjct: 650 gggtctcttcggggaggaccacca 627
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 cctcgccggcgccggtggcg 249 |||||||||||||||||||| Sbjct: 3756433 cctcgccggcgccggtggcg 3756414
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ccacgcctcctcctcctccgtctc 83 ||||||||||||||||||| |||| Sbjct: 52083 ccacgcctcctcctcctccctctc 52060
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 accaccacgccgcggcggcg 182 |||||||||||||||||||| Sbjct: 145255 accaccacgccgcggcggcg 145236
>emb|CT009732.8| Mouse DNA sequence from clone RP23-72O20 on chromosome 9, complete sequence Length = 239257 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctctccca 88 |||| ||||||||||||||||||| Sbjct: 54187 cctcttcctcctccgtctctccca 54164
>emb|AL732311.13| Mouse DNA sequence from clone RP23-125H15 on chromosome 2, complete sequence Length = 209215 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 gcctcctcctcctccgtctctccc 87 |||||||||||||||||| ||||| Sbjct: 17466 gcctcctcctcctccgtcactccc 17443
>emb|AL732555.7| Mouse DNA sequence from clone RP23-124I19 on chromosome 4, complete sequence Length = 157653 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 148775 cctcctcctcctccgtctct 148794
>emb|AL670227.7| Mouse DNA sequence from clone RP23-317N1 on chromosome 4, complete sequence Length = 219973 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cctcctcctcctccgtctct 84 |||||||||||||||||||| Sbjct: 37015 cctcctcctcctccgtctct 36996
>dbj|D87916.1| Streptomyces griseus DNA for ribosoma protein L21, ribosomal protein L27, Obg, complete cds Length = 2837 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 gcggctctacggcggcctgg 408 |||||||||||||||||||| Sbjct: 1563 gcggctctacggcggcctgg 1582 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,769,427 Number of Sequences: 3902068 Number of extensions: 4769427 Number of successful extensions: 413894 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 408955 Number of HSP's gapped (non-prelim): 4930 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
