>LDLR_HUMAN (P01130) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 860

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 277 GDSLNRNENGVECQRDVCVCYKLPCDGSPE 366
           GD   RNE   +CQ   C+ YK  CDGS E
Sbjct: 24  GDRCERNE--FQCQDGKCISYKWVCDGSAE 51

>LDLR_RABIT (P20063) Low-density lipoprotein receptor (LDL receptor) (Fragment)|
          Length = 837

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 277 GDSLNRNENGVECQRDVCVCYKLPCDGSPE 366
           GD   RNE   +C+   C+ YK  CDGS E
Sbjct: 11  GDKCGRNE--FQCRNGKCISYKWVCDGSSE 38

>XYLS3_PSEPU (Q05335) XylDLEGF operon transcriptional activator 3|
          Length = 331

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 334 CYKLPCDGSPELNVIYRRDDSLELNDIEASNRFNIDTTGLVCCWPSEEVLAFYCI 498
           C +LP  G PE ++ +    SL+L  I       + + GL  C+  + +L  +C+
Sbjct: 33  CIRLPKSGCPEASLNHSTFGSLDLCRISYGGSVRVTSPGLETCYHLQVLLKGHCL 87

>CASC5_HUMAN (Q8NG31) Protein CASC5 (Cancer susceptibility candidate gene 5|
           protein) (ALL1-fused gene from chromosome 15q14)
           (AF15q14) (D40/AF15q14 protein)
          Length = 2342

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = +1

Query: 133 SASPHASEGTSKDPQEKGDTNKISRKTSRGFNLIKCHTVPISQLNKSQGDSLNRNENG 306
           ++S H    + K+ +   +  ++ R+   G N  +CHT  I  L  +  ++ +R   G
Sbjct: 277 ASSTHQMHVSLKEDENNSNITRLFREKDDGMNFTQCHTANIQTLIPTSSETNSRESKG 334

>ADA18_MOUSE (Q9R157) ADAM 18 precursor (A disintegrin and metalloproteinase|
           domain 18) (Transmembrane metalloproteinase-like,
           disintegrin-like, and cysteine-rich protein III) (tMDC
           III) (ADAM 27)
          Length = 719

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 482 LPSTVSTIQICSGLKGCLNLELVT 553
           +P+++ T+ ICSGL+G L LE V+
Sbjct: 100 VPNSIVTLSICSGLRGFLQLENVS 123

>PRKDC_CHICK (Q8QGX4) DNA-dependent protein kinase catalytic subunit (EC|
           2.7.11.1) (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4134

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 151 SEGTSKDPQEKGDTNKISRKTSRGFNLIKCHTVPISQLNKSQGDSLNRN 297
           +  T+ +PQ   +  K+SR   +GFN      + I +L K++  SL+ N
Sbjct: 798 NSATTVEPQNNWEVRKLSRAAQKGFN-----KIVIQRLRKAKTSSLDDN 841

>LDLR_MOUSE (P35951) Low-density lipoprotein receptor precursor (LDL receptor)|
          Length = 864

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 280 DSLNRNENGVECQRDVCVCYKLPCDGSPE 366
           DS +RNE   +C+   C+  K  CDGSPE
Sbjct: 25  DSGSRNE--FQCRDGKCIASKWVCDGSPE 51

>ADA32_MOUSE (Q8K410) ADAM 32 precursor (A disintegrin and metalloprotease|
           domain 32)
          Length = 750

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 455 YVVGRLKRSLPSTVSTIQICSGLKGCLNLELVT 553
           Y  G +K   P++V+T+  CSGL+G L  E V+
Sbjct: 93  YYQGHIK-GYPNSVATLSTCSGLRGFLQFENVS 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,354,685
Number of Sequences: 219361
Number of extensions: 1230762
Number of successful extensions: 2968
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2948
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)