Clone Name | bart20d02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK063412.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B04, full insert sequence Length = 1686 Score = 359 bits (181), Expect = 7e-96 Identities = 423/503 (84%), Gaps = 3/503 (0%) Strand = Plus / Plus Query: 82 tccaatgccagcctgcggtggcacatcctccgccgcgccctgctctctcgctccgcctct 141 |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| Sbjct: 920 tccaatgccagcctgcggtggcgcatccttcgccgcgccctgctcgcgcgctccgcctcc 979 Query: 142 ccc---cacgcatcagagggaacctctaaggatccgcaggagaaaggtgataccaacaaa 198 || | |||| |||||| ||| ||||| |||| ||| || ||| |||||| |||||| Sbjct: 980 acctcccgcgcaccagaggaaacttctaacgatcagcaagataaaaatgatactaacaaa 1039 Query: 199 atttcgaggaagacatcgcgtggttttaatctgatcaagtgtcacacagtgccaatttca 258 ||||| || |||||||||||||| ||| | ||||| ||||||| | |||| |||||| Sbjct: 1040 atttccagaaagacatcgcgtggctttgacctgattgagtgtcatatgctgcccatttca 1099 Query: 259 cagctaaataaatcacaaggagattcattaaatagaaatgaaaatggtgttgaatgccaa 318 ||| || ||||||||| || ||||||| || ||||||||| ||| ||| |||||||| Sbjct: 1100 cagtcaactaaatcacatggggattcatcaagtagaaatgagaatattgtggaatgccat 1159 Query: 319 agagatgtctgtgtttgttataagctgccctgtgatggttcaccggaacttaatgtaata 378 | ||||| |||| ||||| ||||| || ||||| |||||||| ||||||| || || Sbjct: 1160 aatgatgttcgtgtctgttacaagctaccttgtgaaggttcacctaaacttaacctagta 1219 Query: 379 tacagaagagatgattcccttgaactaaatgacattgaagcttccaaccgatttaatatt 438 ||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| |||||| Sbjct: 1220 tacagaagagaggattcccttgaactaaatgacattgtagcttctaacagatacaatatt 1279 Query: 439 gacactactggacttgtatgttgttggccgtctgaagaggtccttgccttctactgtatc 498 ||||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||| Sbjct: 1280 gacactactggacttgtgtgttgttggccgtcggaagaggtccttgcgtactactgtatc 1339 Query: 499 aaccattcagatatgttcaggtctaaaagggtgcttgaacttggagctggttacggattg 558 |||||||| |||||||||||||| || | ||||||||| |||||| | ||||| || || Sbjct: 1340 aaccattcggatatgttcaggtccaagaaggtgcttgagcttggatccggttatgggtta 1399 Query: 559 gcgggacttgttattgcagccag 581 || ||||||| |||||||||||| Sbjct: 1400 gctggacttgctattgcagccag 1422
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 378 atacagaagagatgattcccttgaactaaatgacattgaagcttccaaccgatttaatat 437 |||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||||| Sbjct: 7574343 atacagaagagaggattcccttgaactaaatgacattgtagcttctaacagatacaatat 7574402 Query: 438 tgacactactggacttgt 455 |||||||||||||||||| Sbjct: 7574403 tgacactactggacttgt 7574420 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 458 gttgttggccgtctgaagaggtccttgccttctactgtatcaaccattcagatatgttca 517 ||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||| Sbjct: 7575034 gttgttggccgtcggaagaggtccttgcgtactactgtatcaaccattcggatatgttca 7575093 Query: 518 ggt 520 ||| Sbjct: 7575094 ggt 7575096 Score = 87.7 bits (44), Expect = 4e-14 Identities = 176/220 (80%) Strand = Plus / Plus Query: 152 cagagggaacctctaaggatccgcaggagaaaggtgataccaacaaaatttcgaggaaga 211 |||||| ||| ||||| |||| ||| || ||| |||||| ||||||||||| || |||| Sbjct: 7573784 cagaggaaacttctaacgatcagcaagataaaaatgatactaacaaaatttccagaaaga 7573843 Query: 212 catcgcgtggttttaatctgatcaagtgtcacacagtgccaatttcacagctaaataaat 271 |||||||||| ||| | ||||| ||||||| | |||| ||||||||| || ||||| Sbjct: 7573844 catcgcgtggctttgacctgattgagtgtcatatgctgcccatttcacagtcaactaaat 7573903 Query: 272 cacaaggagattcattaaatagaaatgaaaatggtgttgaatgccaaagagatgtctgtg 331 |||| || ||||||| || ||||||||| ||| ||| |||||||| | ||||| ||| Sbjct: 7573904 cacatggggattcatcaagtagaaatgagaatattgtggaatgccataatgatgttcgtg 7573963 Query: 332 tttgttataagctgccctgtgatggttcaccggaacttaa 371 | ||||| ||||| || ||||| |||||||| ||||||| Sbjct: 7573964 tctgttacaagctaccttgtgaaggttcacctaaacttaa 7574003 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 82 tccaatgccagcctgcggtggcacatcctccgccgcgccctgctctctcgctccgcctc 140 |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| Sbjct: 7572799 tccaatgccagcctgcggtggcgcatccttcgccgcgccctgctcgcgcgctccgcctc 7572857 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Plus Query: 528 ggtgcttgaacttggagctggttacggattggcgggacttgttattgcagccag 581 ||||||||| |||||| | ||||| || || || ||||||| |||||||||||| Sbjct: 7575844 ggtgcttgagcttggatccggttatgggttagctggacttgctattgcagccag 7575897
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 378 atacagaagagatgattcccttgaactaaatgacattgaagcttccaaccgatttaatat 437 |||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||||| Sbjct: 7572178 atacagaagagaggattcccttgaactaaatgacattgtagcttctaacagatacaatat 7572237 Query: 438 tgacactactggacttgt 455 |||||||||||||||||| Sbjct: 7572238 tgacactactggacttgt 7572255 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 458 gttgttggccgtctgaagaggtccttgccttctactgtatcaaccattcagatatgttca 517 ||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||| Sbjct: 7572869 gttgttggccgtcggaagaggtccttgcgtactactgtatcaaccattcggatatgttca 7572928 Query: 518 ggt 520 ||| Sbjct: 7572929 ggt 7572931 Score = 87.7 bits (44), Expect = 4e-14 Identities = 176/220 (80%) Strand = Plus / Plus Query: 152 cagagggaacctctaaggatccgcaggagaaaggtgataccaacaaaatttcgaggaaga 211 |||||| ||| ||||| |||| ||| || ||| |||||| ||||||||||| || |||| Sbjct: 7571619 cagaggaaacttctaacgatcagcaagataaaaatgatactaacaaaatttccagaaaga 7571678 Query: 212 catcgcgtggttttaatctgatcaagtgtcacacagtgccaatttcacagctaaataaat 271 |||||||||| ||| | ||||| ||||||| | |||| ||||||||| || ||||| Sbjct: 7571679 catcgcgtggctttgacctgattgagtgtcatatgctgcccatttcacagtcaactaaat 7571738 Query: 272 cacaaggagattcattaaatagaaatgaaaatggtgttgaatgccaaagagatgtctgtg 331 |||| || ||||||| || ||||||||| ||| ||| |||||||| | ||||| ||| Sbjct: 7571739 cacatggggattcatcaagtagaaatgagaatattgtggaatgccataatgatgttcgtg 7571798 Query: 332 tttgttataagctgccctgtgatggttcaccggaacttaa 371 | ||||| ||||| || ||||| |||||||| ||||||| Sbjct: 7571799 tctgttacaagctaccttgtgaaggttcacctaaacttaa 7571838 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 82 tccaatgccagcctgcggtggcacatcctccgccgcgccctgctctctcgctccgcctc 140 |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| Sbjct: 7570634 tccaatgccagcctgcggtggcgcatccttcgccgcgccctgctcgcgcgctccgcctc 7570692 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Plus Query: 528 ggtgcttgaacttggagctggttacggattggcgggacttgttattgcagccag 581 ||||||||| |||||| | ||||| || || || ||||||| |||||||||||| Sbjct: 7573679 ggtgcttgagcttggatccggttatgggttagctggacttgctattgcagccag 7573732
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11, complete sequence Length = 113049 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Plus Query: 378 atacagaagagatgattcccttgaactaaatgacattgaagcttccaaccgatttaatat 437 |||||||||||| ||||||||||||||||||||||||| |||||| ||| ||| ||||| Sbjct: 103239 atacagaagagaggattcccttgaactaaatgacattgtagcttctaacagatacaatat 103298 Query: 438 tgacactactggacttgt 455 |||||||||||||||||| Sbjct: 103299 tgacactactggacttgt 103316 Score = 93.7 bits (47), Expect = 6e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 458 gttgttggccgtctgaagaggtccttgccttctactgtatcaaccattcagatatgttca 517 ||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||| Sbjct: 103930 gttgttggccgtcggaagaggtccttgcgtactactgtatcaaccattcggatatgttca 103989 Query: 518 ggt 520 ||| Sbjct: 103990 ggt 103992 Score = 87.7 bits (44), Expect = 4e-14 Identities = 176/220 (80%) Strand = Plus / Plus Query: 152 cagagggaacctctaaggatccgcaggagaaaggtgataccaacaaaatttcgaggaaga 211 |||||| ||| ||||| |||| ||| || ||| |||||| ||||||||||| || |||| Sbjct: 102680 cagaggaaacttctaacgatcagcaagataaaaatgatactaacaaaatttccagaaaga 102739 Query: 212 catcgcgtggttttaatctgatcaagtgtcacacagtgccaatttcacagctaaataaat 271 |||||||||| ||| | ||||| ||||||| | |||| ||||||||| || ||||| Sbjct: 102740 catcgcgtggctttgacctgattgagtgtcatatgctgcccatttcacagtcaactaaat 102799 Query: 272 cacaaggagattcattaaatagaaatgaaaatggtgttgaatgccaaagagatgtctgtg 331 |||| || ||||||| || ||||||||| ||| ||| |||||||| | ||||| ||| Sbjct: 102800 cacatggggattcatcaagtagaaatgagaatattgtggaatgccataatgatgttcgtg 102859 Query: 332 tttgttataagctgccctgtgatggttcaccggaacttaa 371 | ||||| ||||| || ||||| |||||||| ||||||| Sbjct: 102860 tctgttacaagctaccttgtgaaggttcacctaaacttaa 102899 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 82 tccaatgccagcctgcggtggcacatcctccgccgcgccctgctctctcgctccgcctc 140 |||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||| Sbjct: 101695 tccaatgccagcctgcggtggcgcatccttcgccgcgccctgctcgcgcgctccgcctc 101753 Score = 44.1 bits (22), Expect = 0.51 Identities = 46/54 (85%) Strand = Plus / Plus Query: 528 ggtgcttgaacttggagctggttacggattggcgggacttgttattgcagccag 581 ||||||||| |||||| | ||||| || || || ||||||| |||||||||||| Sbjct: 104740 ggtgcttgagcttggatccggttatgggttagctggacttgctattgcagccag 104793
>ref|XM_535240.2| PREDICTED: Canis familiaris similar to Mitogen-activated protein kinase kinase kinase 1 (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) (LOC478061), mRNA Length = 5677 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 22 tcctcctcgccttccccgtcgccggagcc 50 |||||||| |||||||||||||||||||| Sbjct: 304 tcctcctccccttccccgtcgccggagcc 332
>ref|XM_042066.10| PREDICTED: Homo sapiens mitogen-activated protein kinase kinase kinase 1 (MAP3K1), mRNA Length = 7563 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 23 cctcctcgccttccccgtcgccggagcc 50 |||||||| ||||||||||||||||||| Sbjct: 815 cctcctcgacttccccgtcgccggagcc 842
>gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, complete sequence Length = 171480 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 23 cctcctcgccttccccgtcgccggagcc 50 |||||||| ||||||||||||||||||| Sbjct: 118247 cctcctcgacttccccgtcgccggagcc 118220
>gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chromosome unknown, complete sequence Length = 179999 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Minus Query: 23 cctcctcgccttccccgtcgccggagcc 50 |||||||| ||||||||||||||||||| Sbjct: 122963 cctcctcgacttccccgtcgccggagcc 122936
>gb|AF042838.1|AF042838 Homo sapiens MEK kinase 1 (MEKK1) mRNA, partial cds Length = 4693 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 23 cctcctcgccttccccgtcgccggagcc 50 |||||||| ||||||||||||||||||| Sbjct: 200 cctcctcgacttccccgtcgccggagcc 227
>gb|AC110989.3| Homo sapiens 3q BAC RP11-15M16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161520 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 ttcattaaatagaaatgaaaatg 304 ||||||||||||||||||||||| Sbjct: 69408 ttcattaaatagaaatgaaaatg 69430
>gb|AC108680.5| Homo sapiens 3 BAC RP11-169I18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75000 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 ttcattaaatagaaatgaaaatg 304 ||||||||||||||||||||||| Sbjct: 4358 ttcattaaatagaaatgaaaatg 4336
>ref|NM_103756.2| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ phosphoethanolamine N-methyltransferase AT1G48600 transcript variant AT1G48600.1 mRNA, complete cds Length = 1753 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 186 gtgcttgaacttggagctggt 206
>ref|NM_202264.1| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ methyltransferase/ phosphoethanolamine N-methyltransferase AT1G48600 transcript variant AT1G48600.2 mRNA, complete cds Length = 1939 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 372 gtgcttgaacttggagctggt 392
>gb|BC030337.1| Mus musculus RIKEN cDNA 4833432E10 gene, mRNA (cDNA clone IMAGE:5401103), containing frame-shift errors Length = 2978 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 ttgaactaaatgacattgaag 418 ||||||||||||||||||||| Sbjct: 68 ttgaactaaatgacattgaag 88
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cctcgccttccccgtcgccgg 46 ||||||||||||||||||||| Sbjct: 1450815 cctcgccttccccgtcgccgg 1450795
>gb|AY133811.1| Arabidopsis thaliana clone U11999 putative phosphoethanolamine N-methyltransferase (At1g48600) mRNA, complete cds Length = 1459 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 121 gtgcttgaacttggagctggt 141
>gb|AY063866.1| Arabidopsis thaliana putative phosphoethanolamine N-methyltransferase (At1g48600) mRNA, complete cds Length = 1660 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 155 gtgcttgaacttggagctggt 175
>emb|X57003.1|HAGUBB2 H.annuus GUbB2 gene for polyubiquitin protein Length = 3016 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 caatttcacagctaaataaatcaca 275 |||||||||| |||||||||||||| Sbjct: 1594 caatttcacatctaaataaatcaca 1570
>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two novel genes, the 5' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin) and the Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and 7, complete sequence Length = 223726 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 aaatagaaatgaaaatggtgt 308 ||||||||||||||||||||| Sbjct: 9395 aaatagaaatgaaaatggtgt 9375
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence Length = 222121 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 aaatagaaatgaaaatggtgt 308 ||||||||||||||||||||| Sbjct: 100217 aaatagaaatgaaaatggtgt 100197
>gb|AF428454.1|AF428454 Arabidopsis thaliana At1g48600/T1N15_20 mRNA, complete cds Length = 1656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 139 gtgcttgaacttggagctggt 159
>dbj|AK086254.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930016J01 product:DNA methyltransferase 3A, full insert sequence Length = 4017 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 ttgaactaaatgacattgaag 418 ||||||||||||||||||||| Sbjct: 159 ttgaactaaatgacattgaag 139
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I, complete sequence Length = 95295 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 gtgcttgaacttggagctggt 549 ||||||||||||||||||||| Sbjct: 81544 gtgcttgaacttggagctggt 81564
>gb|AC159324.2| Mus musculus BAC clone RP23-9D1 from chromosome 12, complete sequence Length = 207280 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 398 ttgaactaaatgacattgaag 418 ||||||||||||||||||||| Sbjct: 61223 ttgaactaaatgacattgaag 61203
>emb|CR974568.14| Mouse DNA sequence from clone RP23-39N20 on chromosome 12, complete sequence Length = 251037 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 ttgaactaaatgacattgaag 418 ||||||||||||||||||||| Sbjct: 61278 ttgaactaaatgacattgaag 61298
>emb|AL592224.17| Mouse DNA sequence from clone RP23-174G1 on chromosome 1, complete sequence Length = 217775 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 cgcgccctgctctctcgctcc 135 ||||||||||||||||||||| Sbjct: 13740 cgcgccctgctctctcgctcc 13760
>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 149H13 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 240425 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 aaatagaaatgaaaatggtgt 308 ||||||||||||||||||||| Sbjct: 74133 aaatagaaatgaaaatggtgt 74153
>ref|NM_117257.1| Arabidopsis thaliana unknown protein AT4G11870 mRNA, complete cds Length = 225 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 ccgtcgccggagccgccgcagtcg 60 |||||||||||||||| ||||||| Sbjct: 53 ccgtcgccggagccgctgcagtcg 30
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 gccctgtgatggttcaccgg 364 |||||||||||||||||||| Sbjct: 1580952 gccctgtgatggttcaccgg 1580971
>ref|XM_481072.1| Oryza sativa (japonica cultivar-group), mRNA Length = 456 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 145 cttccccgccgccggagccgccgc 122
>ref|XM_477250.1| Oryza sativa (japonica cultivar-group), mRNA Length = 579 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 279 cttccccgccgccggagccgccgc 256
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 aaatggtgttgaatgccaaa 319 |||||||||||||||||||| Sbjct: 31375 aaatggtgttgaatgccaaa 31356
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete sequence Length = 186798 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 cattaaatagaaatgaaaat 303 |||||||||||||||||||| Sbjct: 142894 cattaaatagaaatgaaaat 142913
>gb|AC123823.3| Mus musculus BAC clone RP24-63C11 from chromosome 7, complete sequence Length = 185494 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 taaatagaaatgaaaatggt 306 |||||||||||||||||||| Sbjct: 55222 taaatagaaatgaaaatggt 55241
>gb|AC005692.1| Homo sapiens PAC clone RP5-842K16 from 7, complete sequence Length = 62536 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tttaatctgatcaagtgtca 242 |||||||||||||||||||| Sbjct: 9624 tttaatctgatcaagtgtca 9643
>emb|AL731568.7| Human DNA sequence from clone RP11-367B6 on chromosome 10 Contains the 5' end of the gene for CDA017 protein, a novel gene and a CpG island, complete sequence Length = 137034 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 gggacttgttattgcagcca 580 |||||||||||||||||||| Sbjct: 124859 gggacttgttattgcagcca 124878
>emb|AL591397.3| Human DNA sequence from clone RP11-240M16 on chromosome 6 Contains the 3' end of a novel gene and a laminin receptor 1 (67kD ribosomal protein SA) (LAMR1) pseudogene, complete sequence Length = 82646 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 gctaaataaatcacaaggagattc 284 |||||||||||||||| ||||||| Sbjct: 49122 gctaaataaatcacaatgagattc 49145
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence Length = 205629 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cattaaatagaaatgaaaat 303 |||||||||||||||||||| Sbjct: 126004 cattaaatagaaatgaaaat 125985
>ref|NM_001016726.2| Xenopus tropicalis GTP binding protein overexpressed in skeletal muscle (gem), mRNA Length = 1574 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cattaaatagaaatgaaaat 303 |||||||||||||||||||| Sbjct: 1166 cattaaatagaaatgaaaat 1147
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 gccttccccgtcgccggagccgcc 53 ||||||||||||||||||| |||| Sbjct: 223376 gccttccccgtcgccggagtcgcc 223353
>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09, complete sequence Length = 96079 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 tcgccttccccgtcgccggagccgccgc 55 ||||| || ||||||||||||||||||| Sbjct: 21799 tcgccgtcgccgtcgccggagccgccgc 21826
>emb|AL589701.9| Mouse DNA sequence from clone RP23-202F3 on chromosome 13 Contains a novel gene and the 3' end of a novel gene (1190005B03Rik), complete sequence Length = 219200 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 gtccttgccttctactgtat 497 |||||||||||||||||||| Sbjct: 36373 gtccttgccttctactgtat 36354
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 ccgtcgccggagccgccgcagtcg 60 |||||||||||||||| ||||||| Sbjct: 191603 ccgtcgccggagccgctgcagtcg 191626
>emb|AL078606.1|ATT26M18 Arabidopsis thaliana DNA chromosome 4, BAC clone T26M18 (ESSA project) Length = 90824 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 ccgtcgccggagccgccgcagtcg 60 |||||||||||||||| ||||||| Sbjct: 54303 ccgtcgccggagccgctgcagtcg 54326
>emb|BX470109.3| Mouse DNA sequence from clone RP23-59I3 on chromosome 4, complete sequence Length = 228869 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 aatttcacagctaaataaat 271 |||||||||||||||||||| Sbjct: 198049 aatttcacagctaaataaat 198030
>gb|AC087269.5| Homo sapiens chromosome 8, clone RP11-211C9, complete sequence Length = 187924 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cagaagagatgattcccttg 400 |||||||||||||||||||| Sbjct: 43161 cagaagagatgattcccttg 43142
>gb|AC105268.2| Homo sapiens chromosome 1 clone RP5-1107G8, complete sequence Length = 148970 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 495 tatcaaccattcagatatgttcag 518 |||||||||||||||||| ||||| Sbjct: 9436 tatcaaccattcagatatcttcag 9459
>gb|AC023426.29| Homo sapiens 12 BAC RP11-396L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148610 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cagctaaataaatcacaagg 278 |||||||||||||||||||| Sbjct: 23892 cagctaaataaatcacaagg 23911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 tcgccttccccgtcgccggagccgccgc 55 ||||| || ||||||||||||||||||| Sbjct: 20918576 tcgccgtcgccgtcgccggagccgccgc 20918603
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 9640151 cttccccgccgccggagccgccgc 9640174
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 8161618 cttccccgccgccggagccgccgc 8161641
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 agaaatgaaaatggtgttga 311 |||||||||||||||||||| Sbjct: 195507 agaaatgaaaatggtgttga 195488
>dbj|AP002818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436E04 Length = 144644 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 agaaatgaaaatggtgttga 311 |||||||||||||||||||| Sbjct: 37177 agaaatgaaaatggtgttga 37158
>dbj|AP006266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0003K21 Length = 158810 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 44641 cttccccgccgccggagccgccgc 44664
>dbj|AP003738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_C08 Length = 117923 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 95390 cttccccgccgccggagccgccgc 95413
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1015H11 Length = 156897 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 cttccccgtcgccggagccgccgc 55 |||||||| ||||||||||||||| Sbjct: 37631 cttccccgccgccggagccgccgc 37654
>emb|CR760056.2| Xenopus tropicalis finished cDNA, clone TNeu143f19 Length = 1574 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cattaaatagaaatgaaaat 303 |||||||||||||||||||| Sbjct: 1166 cattaaatagaaatgaaaat 1147
>gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome 12, complete sequence Length = 225046 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gagatgtctgtgtttgttat 339 |||||||||||||||||||| Sbjct: 179984 gagatgtctgtgtttgttat 179965
>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete sequence Length = 151493 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cagctaaataaatcacaagg 278 |||||||||||||||||||| Sbjct: 60721 cagctaaataaatcacaagg 60702
>emb|AL672055.8| Mouse DNA sequence from clone RP23-339K2 on chromosome X, complete sequence Length = 232188 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 6 cccagtccccatgggatcctcctc 29 |||| ||||||||||||||||||| Sbjct: 136409 cccactccccatgggatcctcctc 136432
>gb|AC166358.5| Mus musculus BAC clone RP23-338N2 from chromosome 12, complete sequence Length = 226310 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 gagatgtctgtgtttgttat 339 |||||||||||||||||||| Sbjct: 36111 gagatgtctgtgtttgttat 36092
>dbj|AP002969.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0455C04 Length = 147940 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 agaaatgaaaatggtgttga 311 |||||||||||||||||||| Sbjct: 144053 agaaatgaaaatggtgttga 144034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,492,824 Number of Sequences: 3902068 Number of extensions: 5492824 Number of successful extensions: 112464 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112034 Number of HSP's gapped (non-prelim): 430 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)