Clone Information

BLAST Search Result

Clone Name	bart20c08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (T...	208	8e-54
2	PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)	164	2e-40
3	PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro...	160	2e-39
4	PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P...	160	2e-39
5	PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P...	160	2e-39
6	PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P...	158	1e-38
7	PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (P...	151	1e-36
8	PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4	151	1e-36
9	PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (T...	128	1e-29
10	PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B	61	3e-09
11	PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteaso...	59	1e-08
12	PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso...	54	2e-07
13	PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-bindi...	53	6e-07
14	PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)...	53	6e-07
15	PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase ...	52	9e-07
16	PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)...	52	2e-06
17	PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog ...	52	2e-06
18	PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog	51	2e-06
19	PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog	51	2e-06
20	PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog ...	50	4e-06
21	PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog	48	2e-05
22	PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteaso...	48	2e-05
23	PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteaso...	48	2e-05
24	PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteaso...	47	5e-05
25	PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteaso...	46	7e-05
26	PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteaso...	45	1e-04
27	PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso...	45	1e-04
28	PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso...	45	2e-04
29	PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso...	45	2e-04
30	PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso...	45	2e-04
31	PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog	44	3e-04
32	PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteaso...	41	0.003
33	PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease sub...	37	0.053
34	PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteaso...	37	0.053
35	PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Prote...	34	0.26
36	PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Prote...	34	0.26
37	PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Prote...	34	0.26
38	PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteaso...	32	1.0
39	SCNNH_XENLA (O13263) Amiloride-sensitive sodium channel gamma-2-...	30	6.5
40	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	30	6.5
41	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	30	6.5
42	MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai...	30	6.5
43	SCNNG_XENLA (P51171) Amiloride-sensitive sodium channel gamma-su...	30	6.5
44	IF2_STRAW (Q82K53) Translation initiation factor IF-2	26	7.8

>PRS4_ORYSA (P46466) 26S protease regulatory subunit 4 homolog (TAT-binding|
           protein homolog 2)
          Length = 448

 Score =  208 bits (530), Expect = 8e-54
 Identities = 107/133 (80%), Positives = 111/133 (83%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           FEP AAPSRVGRKQRKQ+GPEAAARLP VAP                   MEEEFVA+QE
Sbjct: 32  FEPSAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLLKLERVKDYLLMEEEFVAAQE 91

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           RLRP+EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV +LSFVDKDQ
Sbjct: 92  RLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQ 151

Query: 541 LEPGCSILMHNKV 579
           LEPGCSILMHNKV
Sbjct: 152 LEPGCSILMHNKV 164

to top

>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score =  164 bits (415), Expect = 2e-40
 Identities = 79/133 (59%), Positives = 104/133 (78%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP  P+RVG+K+R+ +GP+AA +LP V P                   ME+EF+ +QE
Sbjct: 24  YEPPI-PTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQE 82

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           RL+P ++K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YVS+LSFVDKDQ
Sbjct: 83  RLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 142

Query: 541 LEPGCSILMHNKV 579
           LEPGCS+L+++KV
Sbjct: 143 LEPGCSVLLNHKV 155

to top

>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  160 bits (406), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 104/133 (78%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YVS+LSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 541 LEPGCSILMHNKV 579
           LEPGCS+L+++KV
Sbjct: 144 LEPGCSVLLNHKV 156

to top

>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  160 bits (406), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 104/133 (78%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YVS+LSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 541 LEPGCSILMHNKV 579
           LEPGCS+L+++KV
Sbjct: 144 LEPGCSVLLNHKV 156

to top

>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  160 bits (406), Expect = 2e-39
 Identities = 78/133 (58%), Positives = 104/133 (78%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP  P+RVG+K++K +GP+AA++LP V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YVS+LSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 541 LEPGCSILMHNKV 579
           LEPGCS+L+++KV
Sbjct: 144 LEPGCSVLLNHKV 156

to top

>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score =  158 bits (399), Expect = 1e-38
 Identities = 77/133 (57%), Positives = 103/133 (77%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP  P+RVG+K++K +GP+AA++ P V P                   MEEEF+ +QE
Sbjct: 25  YEPPV-PTRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQE 83

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           +++P E+K EE+RSKVDDLRGTPMSVG+LEEIID++HAIVS+SVG E+YVS+LSFVDKD 
Sbjct: 84  QMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDL 143

Query: 541 LEPGCSILMHNKV 579
           LEPGCS+L+++KV
Sbjct: 144 LEPGCSVLLNHKV 156

to top

>PRS4_SCHPO (P36612) 26S protease regulatory subunit 4 homolog (Protein mts2)|
          Length = 448

 Score =  151 bits (382), Expect = 1e-36
 Identities = 73/133 (54%), Positives = 102/133 (76%), Gaps = 1/133 (0%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRK-QRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQ 357
           +EPP  P+R GR+++K Q GP+A+A+LP V P                   MEEE+V +Q
Sbjct: 31  YEPPV-PTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQ 89

Query: 358 ERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKD 537
           ERL+P +++T+E+R++VD++RGTPMSVG+LEEIID+ HAIVS++ GPEYYVS++SFVDKD
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKD 148

Query: 538 QLEPGCSILMHNK 576
            LEPGCS+L+H+K
Sbjct: 149 MLEPGCSVLLHHK 161

to top

>PRS4_CAEEL (O16368) Probable 26S protease regulatory subunit 4|
          Length = 443

 Score =  151 bits (381), Expect = 1e-36
 Identities = 70/132 (53%), Positives = 101/132 (76%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +E P  PSR+G+K++  +GP+AA++LP V P                   ME+EF+ +QE
Sbjct: 28  YEAPI-PSRIGKKKKGSKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQE 86

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
           RL+P E++ EE+R+KVD+LRGTPM+VGSLEEIID+ HAIVS++VG E+YV+++SFVDK+Q
Sbjct: 87  RLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQ 146

Query: 541 LEPGCSILMHNK 576
           LEPGCS+L+++K
Sbjct: 147 LEPGCSVLLNHK 158

to top

>PRS4_YEAST (P40327) 26S protease regulatory subunit 4 homolog (TAT-binding|
           homolog 5)
          Length = 437

 Score =  128 bits (321), Expect = 1e-29
 Identities = 63/132 (47%), Positives = 90/132 (68%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPPVAPXXXXXXXXXXXXXXXXXXXMEEEFVASQE 360
           +EPP   S+ GRK+RK  GP  A +LP + P                   +EEEFV++ E
Sbjct: 23  YEPPVQ-SKFGRKKRKG-GPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSE 80

Query: 361 RLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQ 540
            L+P E K EE++ +++++RG P+S+G+LEEIID+ HAIV+S   P+YYVS+LSFVDK+ 
Sbjct: 81  ILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKEL 140

Query: 541 LEPGCSILMHNK 576
           LEPGCS+L+H+K
Sbjct: 141 LEPGCSVLLHHK 152

to top

>PRS6B_CAEEL (P46502) Probable 26S protease regulatory subunit 6B|
          Length = 414

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 24/58 (41%), Positives = 40/58 (68%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILMH 570
           + +V  ++  P+ +G   E +D++HAIV S+ G  YYV VLS +D++ L+PGCS+ +H
Sbjct: 72  QEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALH 129

to top

>PSMR_METKA (Q8TX03) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 436

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 28/80 (35%), Positives = 50/80 (62%)
 Frame = +1

Query: 337 EEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSV 516
           +E    +E LR  E   E+ RS +  ++  P+ VG++EEI+D+   IV SS GP++  +V
Sbjct: 70  DEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNV 129

Query: 517 LSFVDKDQLEPGCSILMHNK 576
              VD+++LEPG ++ ++ +
Sbjct: 130 SPTVDRNELEPGANVALNQQ 149

to top

>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 25/81 (30%), Positives = 53/81 (65%)
 Frame = +1

Query: 334 EEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVS 513
           E++F+ S ER+R  E +    RS+V+ LR  P+ VG + +I+++   +V SS GP++ V+
Sbjct: 33  EKKFIES-ERIR-YEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVN 90

Query: 514 VLSFVDKDQLEPGCSILMHNK 576
              ++++++L+PG  + ++ +
Sbjct: 91  TSQYINEEELKPGARVALNQQ 111

to top

>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)|
           (TBP-7)
          Length = 418

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
 Frame = +1

Query: 334 EEEFVASQERLRPSEDKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 498
           E EF+  QE     E K  +      + +V  ++  P+ +G   E +D++ AIV S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGS 109

Query: 499 EYYVSVLSFVDKDQLEPGCSILMH 570
            YYV +LS +D++ L+P  S+ +H
Sbjct: 110 NYYVRILSTIDRELLKPNASVALH 133

to top

>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7)
          Length = 418

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
 Frame = +1

Query: 334 EEEFVASQERLRPSEDKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 498
           E EF+  QE     E K  +      + +V  ++  P+ +G   E +D++ AIV S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGS 109

Query: 499 EYYVSVLSFVDKDQLEPGCSILMH 570
            YYV +LS +D++ L+P  S+ +H
Sbjct: 110 NYYVRILSTIDRELLKPNASVALH 133

to top

>PRS6B_MANSE (P46507) 26S protease regulatory subunit 6B (ATPase MS73)|
          Length = 415

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 23/80 (28%), Positives = 47/80 (58%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           ++EE++  ++R    E    ++  +V  ++  P+ +G   E +D++  IV S+ G  YYV
Sbjct: 53  VQEEYIKDEQRNLKKEYLHAQE--EVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYV 110

Query: 511 SVLSFVDKDQLEPGCSILMH 570
            +LS +D++ L+P  S+ +H
Sbjct: 111 RILSTIDRELLKPSASVALH 130

to top

>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)|
           (MB67-interacting protein) (TAT-binding protein 7)
           (TBP-7) (CIP21)
          Length = 418

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
 Frame = +1

Query: 334 EEEFVASQERLRPSEDKTEED-----RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGP 498
           E EF+  QE     E K  +      + +V  ++  P+ +G   E +D++ AIV+S+ G 
Sbjct: 50  ELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGS 109

Query: 499 EYYVSVLSFVDKDQLEPGCSILMH 570
            YYV ++S +D++ L+P  S+ +H
Sbjct: 110 NYYVRMVSTIDRELLKPNASVALH 133

to top

>PRS6B_ARATH (Q9SEI4) 26S protease regulatory subunit 6B homolog (26S proteasome|
           AAA-ATPase subunit RPT3) (Regulatory particle triple-A
           ATPase subunit 3)
          Length = 408

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 49/80 (61%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           ++EE+V  +++    E    ++  +V  ++  P+ +G   E++D+++ IV S+ G  YYV
Sbjct: 46  IQEEYVKDEQKNLKRELLRAQE--EVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYV 103

Query: 511 SVLSFVDKDQLEPGCSILMH 570
            +LS ++++ L+P  S+ +H
Sbjct: 104 RILSTINRELLKPSASVALH 123

to top

>PRS6B_SOLTU (P54778) 26S protease regulatory subunit 6B homolog|
          Length = 413

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
 Frame = +1

Query: 331 MEEEFVASQ-ERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYY 507
           ++EE+V  + + LR    + +E+   V  ++  P+ +G   E+ID+++AIV S+ G  YY
Sbjct: 51  IQEEYVKDELKNLRREHLRAQEE---VKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYY 107

Query: 508 VSVLSFVDKDQLEPGCSI 561
           V +LS ++++ L+P  S+
Sbjct: 108 VRILSTINRELLKPSASV 125

to top

>PRS6B_ASPNG (P78578) 26S protease regulatory subunit 6B homolog|
          Length = 423

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 46/80 (57%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           ++EE++  ++R    E    ++  K   ++  P+ +G   E ID++  IV SS G  Y V
Sbjct: 57  LQEEYIKDEQRSLKRELVRAQEEIK--RIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVV 114

Query: 511 SVLSFVDKDQLEPGCSILMH 570
            +LS +D+++L+P  S+ +H
Sbjct: 115 RILSTLDREKLKPSSSVALH 134

to top

>PRS6B_YEAST (P33298) 26S protease regulatory subunit 6B homolog (YNT1 protein)|
           (TAT-binding homolog 2)
          Length = 428

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 24/80 (30%), Positives = 48/80 (60%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           ++E+++  ++R    E K  ++  +V  ++  P+ +G   E ID++  IVSS+ G  Y V
Sbjct: 63  LQEDYIKDEQRHLKRELKRAQE--EVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVV 120

Query: 511 SVLSFVDKDQLEPGCSILMH 570
            +LS +D++ L+P  S+ +H
Sbjct: 121 RILSTLDRELLKPSMSVALH 140

to top

>PRS6B_ENCCU (Q8SQI9) 26S protease regulatory subunit 6B homolog|
          Length = 387

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
 Frame = +1

Query: 382 KTEE--DRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGC 555
           K EE   R ++D ++  P+ +G   E ID S AIV S+ G  + V +LS VD++ L+P  
Sbjct: 38  KREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNT 97

Query: 556 SILMH 570
           ++ +H
Sbjct: 98  TVALH 102

to top

>PSMR_PYRFU (Q8U4H3) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 396

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 42/76 (55%)
 Frame = +1

Query: 349 ASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFV 528
           A +ERL   E +    RS++  LR  P   GS+ E++D+  AIV +  GP + V +  ++
Sbjct: 35  ADKERL---ERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWI 91

Query: 529 DKDQLEPGCSILMHNK 576
           DK +L PG  + +  +
Sbjct: 92  DKSKLRPGTRVALDQR 107

to top

>PSMR_METTH (O26824) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 410

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/81 (23%), Positives = 45/81 (55%)
 Frame = +1

Query: 334 EEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVS 513
           +++ +   ER R   +  +  R +++  R  P+ + ++ E++D+    V S+ GP + ++
Sbjct: 42  KDKLLIENERTRLDRE-VKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVIN 100

Query: 514 VLSFVDKDQLEPGCSILMHNK 576
              F+D+ QLEPG  + ++ +
Sbjct: 101 YSRFIDRKQLEPGARVALNQQ 121

to top

>PSMR_PYRAB (Q9V287) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 23/76 (30%), Positives = 43/76 (56%)
 Frame = +1

Query: 349 ASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFV 528
           A +ERL   E +    RS++  LR  P   G++ E++D+  AIV +  GP + V +  ++
Sbjct: 38  ADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWI 94

Query: 529 DKDQLEPGCSILMHNK 576
           ++D+L PG  + +  +
Sbjct: 95  ERDKLRPGARVALDQR 110

to top

>PSMR_PYRHO (O57940) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 399

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%)
 Frame = +1

Query: 349 ASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFV 528
           A +ERL   E +    RS++  LR  P   G++ E++DE  AIV +  GP + V +  ++
Sbjct: 38  ADKERL---ERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWI 94

Query: 529 DKDQLEPGCSILMHNK 576
           D+ +L PG  + +  +
Sbjct: 95  DRKKLRPGTRVALDQR 110

to top

>PSMR_PYRKO (Q5JHS5) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 397

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 43/76 (56%)
 Frame = +1

Query: 349 ASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFV 528
           A +ERL   E +    R ++  LR  P   G++ E++D+  AIV +  GP + V +  ++
Sbjct: 36  ADKERL---ERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWI 92

Query: 529 DKDQLEPGCSILMHNK 576
           ++D+L+PG  + +  +
Sbjct: 93  ERDKLKPGARVALDQR 108

to top

>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 38/60 (63%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILMHNK 576
           + ++D LR  P+ +G++ + ++E  A+V SS GP + V++  FVD + + PG  + ++ +
Sbjct: 59  KRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQ 118

to top

>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 39/58 (67%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILMH 570
           +S++D ++ +P+ +G++ ++I     IV SS GP++ V+V  ++D+ +L PG  + ++
Sbjct: 70  QSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALN 127

to top

>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 39/58 (67%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILMH 570
           +S++D ++ +P+ +G++ ++I     IV SS GP++ V+V  ++D+ +L PG  + ++
Sbjct: 70  QSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALN 127

to top

>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 430

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILMHNK 576
           R ++D +R  P+ VG++ + + E   +V SS GP + V+V  FV+ D L PG  + ++ +
Sbjct: 81  RRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQ 140

to top

>PRS6B_SCHPO (O74894) 26S protease regulatory subunit 6B homolog|
          Length = 389

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 19/57 (33%), Positives = 35/57 (61%)
 Frame = +1

Query: 397 RSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCSILM 567
           + +V  ++  P+ +G   E ID++ AIV S+ G  Y V +LS +D++ L+P  S+ +
Sbjct: 45  QEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVAL 101

to top

>PSMR_AERPE (Q9YAC7) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 409

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = +1

Query: 376 EDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGC 555
           + + E  ++++  L   P     + E+ID++  +V SS GP   V+V + VD   L+PG 
Sbjct: 43  QKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGA 102

Query: 556 SILMHNK 576
            + ++N+
Sbjct: 103 IVALNNR 109

to top

>PRS10_YEAST (P53549) 26S protease subunit RPT4 (26S protease subunit SUG2)|
           (Proteasomal cap subunit)
          Length = 437

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 379 DKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDKDQLEPGCS 558
           DKTE D   +  L+     +G + + + E   IV +S GP Y V V + VD+ +L+ G  
Sbjct: 89  DKTEND---IKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVR 145

Query: 559 ILM 567
           + +
Sbjct: 146 VTL 148

to top

>PSMR_SULSO (Q980M1) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 393

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 15/82 (18%), Positives = 43/82 (52%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           +EE+  + Q  +     +    +++++ +   P+    + +++ +   +V SS GP   V
Sbjct: 23  LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVV 82

Query: 511 SVLSFVDKDQLEPGCSILMHNK 576
           ++ S +D+  ++PG S+ ++ +
Sbjct: 83  NIASHIDQKLIKPGISVALNQR 104

to top

>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase
           domain protein 44) (CADp44)
          Length = 389

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 355 QERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDK 534
           +E+L+    + E+  + +  L+     VG + + + E   IV ++ GP Y V     +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 535 DQLEPGCSILM 567
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100

to top

>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 355 QERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDK 534
           +E+L+    + E+  + +  L+     VG + + + E   IV ++ GP Y V     +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 535 DQLEPGCSILM 567
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100

to top

>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit|
           p42) (Proteasome 26S subunit ATPase 6)
          Length = 389

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 355 QERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVSVLSFVDK 534
           +E+L+    + E+  + +  L+     VG + + + E   IV ++ GP Y V     +DK
Sbjct: 30  REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 535 DQLEPGCSILM 567
            +L+PG  + +
Sbjct: 90  SKLKPGTRVAL 100

to top

>PSMR_SULTO (Q975U2) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 392

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/79 (24%), Positives = 37/79 (46%)
 Frame = +1

Query: 331 MEEEFVASQERLRPSEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYV 510
           +EE+  +  + L          + +++ L   P     + +I+ +   IV SS GP   V
Sbjct: 23  LEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIV 82

Query: 511 SVLSFVDKDQLEPGCSILM 567
           +V S +D  +L+PG  + +
Sbjct: 83  NVSSNIDIKKLKPGSLVAL 101

to top

>SCNNH_XENLA (O13263) Amiloride-sensitive sodium channel gamma-2-subunit|
           (Epithelial Na(+) channel gamma-2 subunit) (Gamma-2
           ENAC) (Nonvoltage-gated sodium channel 1 gamma-2
           subunit) (SCNEG2) (Gamma-2 NACH)
          Length = 663

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +1

Query: 460 DESHAIVSSSVGPEYYVSVLSFVDKDQLEP------GCSILMHNK 576
           +  + +VSS  G EY + V+ ++D+D+  P      G  IL+H++
Sbjct: 293 ERGNLLVSSMGGAEYGLKVVLYIDEDEYNPYLSTAAGAKILVHDQ 337

to top

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 PPPPSQAGPRQGLPSHGGGVRREP 356
           PPPP   GP +GL    GG R  P
Sbjct: 97  PPPPRSRGPPRGLRGGSGGTRGPP 120

to top

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 PPPPSQAGPRQGLPSHGGGVRREP 356
           PPPP   GP +GL    GG R  P
Sbjct: 97  PPPPRSRGPPRGLRGGSGGTRGPP 120

to top

>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2386

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 285  PPPPSQAGPRQGLPSHGGGVRREPGAAA 368
            PPPP+  GPR      G G    PGA A
Sbjct: 2076 PPPPADGGPRGAGDPGGAGASSGPGAPA 2103

to top

>SCNNG_XENLA (P51171) Amiloride-sensitive sodium channel gamma-subunit|
           (Epithelial Na+ channel gamma subunit) (Gamma ENaC)
           (Nonvoltage-gated sodium channel 1 gamma subunit)
           (SCNEG) (Gamma NaCH)
          Length = 660

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = +1

Query: 460 DESHAIVSSSVGPEYYVSVLSFVDKDQLEP------GCSILMHNK 576
           +  + +VSS  G EY + V+ ++D+D+  P      G  IL+H++
Sbjct: 293 ERGNLLVSSMGGAEYGLKVVLYIDEDEYNPYLSTAAGAKILVHDQ 337

to top

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 25.8 bits (55), Expect(2) = 7.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 181 FEPPAAPSRVGRKQRKQRGPEAAARLPP 264
           F  P  P+R GRK ++QR  E  A   P
Sbjct: 410 FGRPGGPARRGRKSKRQRRQEYEAMQAP 437



 Score = 21.9 bits (45), Expect(2) = 7.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 75  GGDGAGFSGRHG 110
           GG G GF+GR G
Sbjct: 370 GGGGGGFAGRPG 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.310    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,300,525
Number of Sequences: 219361
Number of extensions: 880856
Number of successful extensions: 3877
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3859
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result