ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart20c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 541 bits (273), Expect = e-151 Identities = 446/503 (88%), Gaps = 3/503 (0%) Strand = Plus / Minus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 30019640 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 30019581 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||| Sbjct: 30019580 acaactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccacca 30019521 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 30019520 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 30019461 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 30019460 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 30019401 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 30019400 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 30019341 Query: 388 tcatcgaggccgtcctcgaccaccacggcctccggggctacttctccgagatcaacacca 447 ||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 30019340 tcatcgacaccatcctcgaccaccacggcctcacgggttacttctccgagatcaacacca 30019281 Query: 448 accccagccgcgtcgacgccg---acggccgcctccgcatcgcgccgcaccacgacttcc 504 |||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 30019280 acccgagcgccgtcgacgccgccaccggccgcctccgcatcgcgccgtaccacgacttcc 30019221 Query: 505 acgccggcccgcacggctgcggcctcggcacctgcccgcccaacatgtgcaagggccagg 564 |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 30019220 acgccggcccgcacgggtgcggcctcgggatctgcccgcccaacatgtgcaagggccagg 30019161 Query: 565 tgctcgaccgcatccgcgcctcc 587 ||||||||||||||||||||||| Sbjct: 30019160 tgctcgaccgcatccgcgcctcc 30019138 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 23581618 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 23581562 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 529 tcggcacctgcccgcccaacatgtgcaagggcc 561 ||||||| ||||||||||||||||||||||||| Sbjct: 19906714 tcggcacatgcccgcccaacatgtgcaagggcc 19906746 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggcctccggggctac 428 |||||||||||| ||||||||||||| |||| || || ||||||||| ||| || | | Sbjct: 23581155 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggcgtcctcggatgc 23581096 Query: 429 ttctccgagatcaacaccaaccc 451 ||||| ||||||| ||| ||||| Sbjct: 23581095 ttctcggagatcagcacgaaccc 23581073 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/55 (87%), Gaps = 2/55 (3%) Strand = Plus / Plus Query: 503 ccacgccggcccgcacggctgcggcctcgg--cacctgcccgcccaacatgtgca 555 ||||||| ||||||||||||| | |||| ||||||||||||||||||||||| Sbjct: 19106950 ccacgccaccccgcacggctgctggctcgatacacctgcccgcccaacatgtgca 19107004 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 17486879 tggccggcggcgtggtggtgttcg 17486856
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 541 bits (273), Expect = e-151 Identities = 446/503 (88%), Gaps = 3/503 (0%) Strand = Plus / Minus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 15630 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 15571 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||| Sbjct: 15570 acaactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccacca 15511 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 15510 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 15451 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 15450 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 15391 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 15390 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 15331 Query: 388 tcatcgaggccgtcctcgaccaccacggcctccggggctacttctccgagatcaacacca 447 ||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 15330 tcatcgacaccatcctcgaccaccacggcctcacgggttacttctccgagatcaacacca 15271 Query: 448 accccagccgcgtcgacgccg---acggccgcctccgcatcgcgccgcaccacgacttcc 504 |||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 15270 acccgagcgccgtcgacgccgccaccggccgcctccgcatcgcgccgtaccacgacttcc 15211 Query: 505 acgccggcccgcacggctgcggcctcggcacctgcccgcccaacatgtgcaagggccagg 564 |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 15210 acgccggcccgcacgggtgcggcctcgggatctgcccgcccaacatgtgcaagggccagg 15151 Query: 565 tgctcgaccgcatccgcgcctcc 587 ||||||||||||||||||||||| Sbjct: 15150 tgctcgaccgcatccgcgcctcc 15128
>ref|NM_191798.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 537 bits (271), Expect = e-149 Identities = 444/501 (88%), Gaps = 3/501 (0%) Strand = Plus / Plus Query: 90 atggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgac 149 |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1 atggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcgac 60 Query: 150 aactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccaccatg 209 ||||||||||| ||||| || ||||| || ||| ||||| || ||||||||||||||| Sbjct: 61 aactgggtcgtggacgggctcggcgcgacggaggagttcgagcggctgctgcccaccatg 120 Query: 210 ccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccctc 269 ||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | ||| Sbjct: 121 ccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgctc 180 Query: 270 cgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgccatc 329 ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||||| Sbjct: 181 gccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgccatc 240 Query: 330 agggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttc 389 | |||| |||| |||| |||||||||||| || |||||||||||||||||||||||||| Sbjct: 241 aaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttcttc 300 Query: 390 atcgaggccgtcctcgaccaccacggcctccggggctacttctccgagatcaacaccaac 449 ||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct: 301 atcgacaccatcctcgaccaccacggcctcacgggttacttctccgagatcaacaccaac 360 Query: 450 cccagccgcgtcgacgccg---acggccgcctccgcatcgcgccgcaccacgacttccac 506 || ||| ||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct: 361 ccgagcgccgtcgacgccgccaccggccgcctccgcatcgcgccgtaccacgacttccac 420 Query: 507 gccggcccgcacggctgcggcctcggcacctgcccgcccaacatgtgcaagggccaggtg 566 |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 421 gccggcccgcacgggtgcggcctcgggatctgcccgcccaacatgtgcaagggccaggtg 480 Query: 567 ctcgaccgcatccgcgcctcc 587 ||||||||||||||||||||| Sbjct: 481 ctcgaccgcatccgcgcctcc 501
>dbj|AK061237.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C03, full insert sequence Length = 1100 Score = 533 bits (269), Expect = e-148 Identities = 445/503 (88%), Gaps = 3/503 (0%) Strand = Plus / Plus Query: 88 agatggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcg 147 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 83 agatggccgggatcgtggtggtgttcgacttcgacaagacgatcatcgacgtcgacagcg 142 Query: 148 acaactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccacca 207 ||||||||||||| ||||| || ||| | || ||| ||||| || ||||||||||||| Sbjct: 143 acaactgggtcgtggacgggctcggcacgacggaggagttcgagcggctgctgcccacca 202 Query: 208 tgccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccc 267 ||||||||||||||||||| |||||| | ||||| ||||| |||||| |||||| | | Sbjct: 203 tgccgtggaacaccctcatggacaccatgatgggcgagctccacgcgagcggcaagtcgc 262 Query: 268 tccgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgcca 327 || ||||||||| | ||||||| || | ||||| ||||||||| |||||||||||||| Sbjct: 263 tcgccgacgtcgcgggcgtgctcaggtcggcgccgctcgacccgcgcgtcgtcgccgcca 322 Query: 328 tcagggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttct 387 ||| |||| |||| |||| |||||||||||| || |||||||||||||||||||||||| Sbjct: 323 tcaaggcctgctacggcctgggctgcgacctccggatcctcagcgacgccaaccgcttct 382 Query: 388 tcatcgaggccgtcctcgaccaccacggcctccggggctacttctccgagatcaacacca 447 ||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 383 tcatcgacaccatcctcgaccaccacggcctcacgggttacttctccgagatcaacacca 442 Query: 448 accccagccgcgtcgacgccg---acggccgcctccgcatcgcgccgcaccacgacttcc 504 |||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct: 443 acccgagcgccgtcgacgccgccaccggccgcctccgcatcgcgccgtaccacgacttcc 502 Query: 505 acgccggcccgcacggctgcggcctcggcacctgcccgcccaacatgtgcaagggccagg 564 |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 503 acgccggcccgcacgggtgcggcctcgggatctgcccgcccaacatgtgcaagggccagg 562 Query: 565 tgctcgaccgcatccgcgcctcc 587 ||||||||||||||||||||||| Sbjct: 563 tgctcgaccgcatccgcgcctcc 585
>gb|AY107750.1| Zea mays PCO107612 mRNA sequence Length = 1158 Score = 337 bits (170), Expect = 2e-89 Identities = 355/417 (85%), Gaps = 6/417 (1%) Strand = Plus / Plus Query: 90 atggccggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgac 149 |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 69 atggccggggtcgttgtggtgttcgacttcgacaagacgatcatcgacgtcgacagcgac 128 Query: 150 aactgggtcgtcgacggcctgggcgccaccgagctcttcgaccgcctgctgcccaccatg 209 ||||||||||| ||| |||| ||| |||||||| ||||| ||||| |||||||||||| Sbjct: 129 aactgggtcgtggacagcctcggcttcaccgagccgttcgagcgcctcctgcccaccatg 188 Query: 210 ccgtggaacaccctcatcgacaccgttatgggggagctgcacgcgcagggcaagaccctc 269 || |||||||| ||||| |||||| | |||||||||||||||||||| |||| |||||| Sbjct: 189 ccctggaacacgctcatggacaccatgatgggggagctgcacgcgcacggcaggaccctg 248 Query: 270 cgcgacgtcgccgacgtgctccgggccgcgcccatcgacccgcacgtcgtcgccgccatc 329 |||||||||||| | |||||| || |||||| ||| | || |||| |||||||||| Sbjct: 249 gacgacgtcgccgaggcgctccgtgcggcgcccgtcgtcgcgggcgtccccgccgccatc 308 Query: 330 agggccgcctacagcctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttc 389 | |||||||||| |||||||||||||| | |||||||||||||||||| ||||||| Sbjct: 309 aaggccgcctacgcgctcggctgcgacctgcgcgtcctcagcgacgccaacgccttcttc 368 Query: 390 atcgaggccgtcctcgaccaccacggcctccggggctacttctccgagatcaacaccaac 449 ||||| ||||||| | ||||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 369 atcgacaccgtcctggcgcaccacggcctgctgggctgcttctcccagatcaacaccaac 428 Query: 450 cccagcc------gcgtcgacgccgacggccgcctccgcatcgcgccgcaccacgac 500 ||||||| || |||||||||||||||||||||||||| ||| |||||||| Sbjct: 429 cccagccaccccgacgccgacgccgacggccgcctccgcatcgggccctaccacgac 485 Score = 105 bits (53), Expect = 2e-19 Identities = 62/65 (95%) Strand = Plus / Plus Query: 515 gcacggctgcggcctcggcacctgcccgcccaacatgtgcaagggccaggtgctcgaccg 574 |||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 488 gcacgggtgcggcgtcggcacctgcccgcccaacatgtgcaagggccaggtgctggaccg 547 Query: 575 catcc 579 ||||| Sbjct: 548 catcc 552
>ref|XM_464747.1| Oryza sativa (japonica cultivar-group), mRNA Length = 891 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 25 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 84 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 85 gtcgtcgacgcgctcggcgccaccg 109 Score = 107 bits (54), Expect = 4e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 274 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 333 Query: 405 gaccaccacggcctccggggctacttctccgagatcaacaccaaccccagccg-cgtcga 463 ||||||||||||||| |||| |||||| | | || ||||||| ||| |||| |||||| Sbjct: 334 gaccaccacggcctcgccggctgcttctcggcggtcgacaccaa-cccggccgccgtcga 392 Query: 464 cgccgacggccgcctccg 481 |||||||||||||||||| Sbjct: 393 cgccgacggccgcctccg 410 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 527 cctcggcacctgcccgcccaacatgtgcaagggccaggt 565 ||||| ||||||||| |||||||||||||||||| |||| Sbjct: 450 cctcgccacctgccctcccaacatgtgcaagggcaaggt 488
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 7077879 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 7077938 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 7077939 gtcgtcgacgcgctcggcgccaccg 7077963 Score = 107 bits (54), Expect = 4e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 7078217 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 7078276 Query: 405 gaccaccacggcctccggggctacttctccgagatcaacaccaaccccagccg-cgtcga 463 ||||||||||||||| |||| |||||| | | || ||||||| ||| |||| |||||| Sbjct: 7078277 gaccaccacggcctcgccggctgcttctcggcggtcgacaccaa-cccggccgccgtcga 7078335 Query: 464 cgccgacggccgcctccg 481 |||||||||||||||||| Sbjct: 7078336 cgccgacggccgcctccg 7078353 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 527 cctcggcacctgcccgcccaacatgtgcaagggccaggt 565 ||||| ||||||||| |||||||||||||||||| |||| Sbjct: 7078393 cctcgccacctgccctcccaacatgtgcaagggcaaggt 7078431 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 gtgctcgaccgcatccgcgc 583 |||||||||||||||||||| Sbjct: 27976017 gtgctcgaccgcatccgcgc 27976036
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 121 bits (61), Expect = 3e-24 Identities = 79/85 (92%) Strand = Plus / Plus Query: 96 ggcgtcgtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgg 155 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 81298 ggcgtggtggtggtgttcgacttcgacaagaccatcatcgactgcgacagcgacaactgg 81357 Query: 156 gtcgtcgacggcctgggcgccaccg 180 |||||||||| || |||||||||| Sbjct: 81358 gtcgtcgacgcgctcggcgccaccg 81382 Score = 107 bits (54), Expect = 4e-20 Identities = 119/138 (86%), Gaps = 2/138 (1%) Strand = Plus / Plus Query: 345 ctcggctgcgacctcagggtcctcagcgacgccaaccgcttcttcatcgaggccgtcctc 404 ||||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||||| Sbjct: 81636 ctcgggtgcgagctcagggtgctcagcgacgccaacgccttcttcgtcggcgccgtcctc 81695 Query: 405 gaccaccacggcctccggggctacttctccgagatcaacaccaaccccagccg-cgtcga 463 ||||||||||||||| |||| |||||| | | || ||||||| ||| |||| |||||| Sbjct: 81696 gaccaccacggcctcgccggctgcttctcggcggtcgacaccaa-cccggccgccgtcga 81754 Query: 464 cgccgacggccgcctccg 481 |||||||||||||||||| Sbjct: 81755 cgccgacggccgcctccg 81772 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 527 cctcggcacctgcccgcccaacatgtgcaagggccaggt 565 ||||| ||||||||| |||||||||||||||||| |||| Sbjct: 81812 cctcgccacctgccctcccaacatgtgcaagggcaaggt 81850
>ref|XM_463399.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 58 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 114 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggcctccggggctac 428 |||||||||||| ||||||||||||| |||| || || ||||||||| ||| || | | Sbjct: 325 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggcgtcctcggatgc 384 Query: 429 ttctccgagatcaacaccaaccc 451 ||||| ||||||| ||| ||||| Sbjct: 385 ttctcggagatcagcacgaaccc 407
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 44317 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 44261 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggcctccggggctac 428 |||||||||||| ||||||||||||| |||| || || ||||||||| ||| || | | Sbjct: 43854 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggcgtcctcggatgc 43795 Query: 429 ttctccgagatcaacaccaaccc 451 ||||| ||||||| ||| ||||| Sbjct: 43794 ttctcggagatcagcacgaaccc 43772
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtc 158 |||||||||||||||||||||| |||||||||||| ||||||||| |||||||| Sbjct: 144923 gtggtggtgttcgacttcgacaggaccatcatcgagtgggacagcgacgactgggtc 144867 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 369 agcgacgccaaccgcttcttcatcgaggccgtcctcgaccaccacggcctccggggctac 428 |||||||||||| ||||||||||||| |||| || || ||||||||| ||| || | | Sbjct: 144460 agcgacgccaacgccttcttcatcgagaccgtgctggagcaccacggcgtcctcggatgc 144401 Query: 429 ttctccgagatcaacaccaaccc 451 ||||| ||||||| ||| ||||| Sbjct: 144400 ttctcggagatcagcacgaaccc 144378
>ref|NM_105959.2| Arabidopsis thaliana phosphoric monoester hydrolase AT1G73010 mRNA, complete cds Length = 1172 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 128 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 174
>gb|BT015567.1| Arabidopsis thaliana At1g73010 mRNA sequence Length = 885 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 49 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 95
>emb|BX817736.1|CNS0ACNR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL39ZG03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1117 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 114 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 160
>gb|AY085944.1| Arabidopsis thaliana clone 19976 mRNA, complete sequence Length = 990 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 123 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 169
>dbj|AK176548.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-06-N10 Length = 1092 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 122 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 168
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 111 ttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||||||||||||||||||||||||||| || ||||| || ||||| Sbjct: 68701 ttcgacttcgacaagaccatcatcgacgttgatagcgataattgggt 68655
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 529 tcggcacctgcccgcccaacatgtgcaagggcc 561 ||||||| ||||||||||||||||||||||||| Sbjct: 9623 tcggcacatgcccgcccaacatgtgcaagggcc 9655
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 529 tcggcacctgcccgcccaacatgtgcaagggcc 561 ||||||| ||||||||||||||||||||||||| Sbjct: 129672 tcggcacatgcccgcccaacatgtgcaagggcc 129704
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/55 (87%), Gaps = 2/55 (3%) Strand = Plus / Plus Query: 503 ccacgccggcccgcacggctgcggcctcgg--cacctgcccgcccaacatgtgca 555 ||||||| ||||||||||||| | |||| ||||||||||||||||||||||| Sbjct: 72367 ccacgccaccccgcacggctgctggctcgatacacctgcccgcccaacatgtgca 72421
>gb|AC172859.1| Brassica rapa subsp. pekinensis clone KBrB023K01, complete sequence Length = 102061 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Minus Query: 108 gtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggtcgtcga 163 |||||||| ||||||||||| || || ||||| || ||||| || ||||||||||| Sbjct: 76798 gtgttcgatttcgacaagacgattattgacgtggatagcgataattgggtcgtcga 76743
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 97 gcgtcgtggtggtgttcgactt 118 |||||||||||||||||||||| Sbjct: 1348983 gcgtcgtggtggtgttcgactt 1349004
>gb|AC009366.8| Drosophila melanogaster 3L BAC RP98-48E10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169841 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctccgg 422 |||||||||||||||||||||| Sbjct: 18144 cctcgaccaccacggcctccgg 18165
>ref|NM_176386.1| Drosophila melanogaster CG11489-RC, transcript variant C (CG11489), mRNA Length = 4183 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctccgg 422 |||||||||||||||||||||| Sbjct: 692 cctcgaccaccacggcctccgg 713
>gb|AY095005.1| Drosophila melanogaster GH08190 full insert cDNA Length = 6773 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctccgg 422 |||||||||||||||||||||| Sbjct: 692 cctcgaccaccacggcctccgg 713
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 266 cctccgcgacgtcgccgacgtg 287 |||||||||||||||||||||| Sbjct: 1700235 cctccgcgacgtcgccgacgtg 1700256
>gb|AE003597.4| Drosophila melanogaster chromosome 3L, section 78 of 83 of the complete sequence Length = 365612 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctccgg 422 |||||||||||||||||||||| Sbjct: 151036 cctcgaccaccacggcctccgg 151057
>gb|AF057167.1|AF057167 Drosophila melanogaster DEAD-box protein (Ddx1) gene, partial cds; and cysteine string protein (CSP) gene, alternative splice products, complete cds Length = 10519 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 cctcgaccaccacggcctccgg 422 |||||||||||||||||||||| Sbjct: 9823 cctcgaccaccacggcctccgg 9844
>gb|AY632421.1| Streptomyces viridochromogenes PTT biosynthetic gene Length = 40241 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 cgcgtcgacgccgacggccgc 476 ||||||||||||||||||||| Sbjct: 14364 cgcgtcgacgccgacggccgc 14384
>ref|NM_196261.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.11), mRNA Length = 1014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 624 cgacgtcgacagcgacaactg 644
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 54115 cgacgtcgacagcgacaactg 54095
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 cagccgcgtcgacgccgacgg 472 ||||||||||||||||||||| Sbjct: 1127853 cagccgcgtcgacgccgacgg 1127873
>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence Length = 104578 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ccgcgacgtcgccgacgtgct 289 ||||||||||||||||||||| Sbjct: 85527 ccgcgacgtcgccgacgtgct 85547
>emb|CR733680.2|CNS0GSVZ Tetraodon nigroviridis full-length cDNA Length = 1087 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 tgggggagctgcacgcgcagggcaa 262 |||||||||||||||| |||||||| Sbjct: 572 tgggggagctgcacgctcagggcaa 596
>emb|X65195.2|SVPTT Streptomyces viridochromogenes strain Tue494 phosphinothricin tripeptide biosynthetic gene cluster: ORFB1, ORFB2, ORF1, phsB gene, ORFM, phsC gene, pmi gene, adhP gene, ORF3, pgdP gene, ppm gene, ppd gene, ORFx, pgmP gene, cpps gene, cppm gene, aldP gene, pmet gene, pms gene, phsA gene, pat gene, dea gene, the1 gene, the2 gene, trs gene, prpA gene, ORFE1, ORFE2 and ORFE3 (partial) Length = 37823 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 cgcgtcgacgccgacggccgc 476 ||||||||||||||||||||| Sbjct: 15966 cgcgtcgacgccgacggccgc 15986
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cgtcgagatggccggcgtcgt 103 ||||||||||||||||||||| Sbjct: 2228537 cgtcgagatggccggcgtcgt 2228517
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 gtgctcgaccgcatccgcgcc 584 ||||||||||||||||||||| Sbjct: 3486921 gtgctcgaccgcatccgcgcc 3486941
>emb|AJ000264.1|SGJ000264 Streptomyces granaticolor gene encoding protein kinase Length = 4205 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 369 agcgacgccaaccgcttcttcatcg 393 ||||||||||||||| ||||||||| Sbjct: 2881 agcgacgccaaccgcgtcttcatcg 2905
>emb|AJ459818.1|LES459818 Lycopersicon esculentum psi14A gene for putative phosphatase, exons 1-4 Length = 2370 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 105 gtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| ||||||||||||||||| || ||||| || || || || |||||||| Sbjct: 855 gtggttttcgacttcgacaagacgattatcgatgtggatagtgataactgggt 907
>emb|AJ459817.1|LES459817 Lycopersicon esculentum mRNA for putative phosphatase (psi14A gene) Length = 1198 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 105 gtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| ||||||||||||||||| || ||||| || || || || |||||||| Sbjct: 52 gtggttttcgacttcgacaagacgattatcgatgtggatagtgataactgggt 104 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ctgcccgcccaacatgtgcaaggg 559 |||||| ||||||||||||||||| Sbjct: 477 ctgccctcccaacatgtgcaaggg 500
>gb|AE005677.1| Caulobacter crescentus CB15 section 3 of 359 of the complete genome Length = 14299 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcga 115 ||||||||||||||| ||||||||| Sbjct: 1543 tggccggcgtcgtggaggtgttcga 1519
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 cgtcgagatggccggcgtcgt 103 ||||||||||||||||||||| Sbjct: 3967375 cgtcgagatggccggcgtcgt 3967395
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ctcgaccaccacggcctccgg 422 ||||||||||||||||||||| Sbjct: 25091002 ctcgaccaccacggcctccgg 25091022
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 12254959 cgacgtcgacagcgacaactg 12254939 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 agccgcgtcgacgccgacggccgc 476 |||||||||||||| ||||||||| Sbjct: 16639119 agccgcgtcgacgcggacggccgc 16639096
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 ccgcgacgtcgccgacgtgct 289 ||||||||||||||||||||| Sbjct: 2102653 ccgcgacgtcgccgacgtgct 2102673
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ctcgaccaccacggcctccgg 422 ||||||||||||||||||||| Sbjct: 40477 ctcgaccaccacggcctccgg 40457
>dbj|AK100450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090P15, full insert sequence Length = 1268 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ctcgaccaccacggcctccgg 422 ||||||||||||||||||||| Sbjct: 286 ctcgaccaccacggcctccgg 306
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gccgcgtcgacgccgacggcc 474 ||||||||||||||||||||| Sbjct: 3599603 gccgcgtcgacgccgacggcc 3599583
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 cgacgtcgacagcgacaactg 154 ||||||||||||||||||||| Sbjct: 12262299 cgacgtcgacagcgacaactg 12262279 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 453 agccgcgtcgacgccgacggccgc 476 |||||||||||||| ||||||||| Sbjct: 16647760 agccgcgtcgacgcggacggccgc 16647737
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ctcgaccaccacggcctccgg 422 ||||||||||||||||||||| Sbjct: 25019204 ctcgaccaccacggcctccgg 25019224
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ctcgaccaccacggcctccgg 422 ||||||||||||||||||||| Sbjct: 16169 ctcgaccaccacggcctccgg 16149
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 atgggggagctgcacgcgcagggca 261 ||||| ||||||||||||||||||| Sbjct: 44909 atgggcgagctgcacgcgcagggca 44933
>gb|AY378169.1| Cichorium intybus acid phosphatase-like mRNA, partial sequence Length = 457 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ctgcccgcccaacatgtgcaaggg 559 |||||| ||||||||||||||||| Sbjct: 409 ctgccctcccaacatgtgcaaggg 432
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 63872 cgtggtggtgttcgacttcg 63891
>gb|AY316744.1|AY316743S2 Lysobacter enzymogenes indole-3-glycerol phosphate synthase (trpC) gene, partial cds; and possible phosphoserine phosphatase (serB) gene, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 475 tggtggtgttcgacttcgac 494
>ref|XM_475567.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3084 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1480 tcagggccgcctccagcctcggct 1457
>ref|XM_518678.1| PREDICTED: Pan troglodytes similar to peptidylprolyl isomerase (cyclophilin)-like 6 (LOC462927), mRNA Length = 909 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 26 ggcccgcacggctgcggcct 7
>ref|NM_196910.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071K18.17), mRNA Length = 1821 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 agccgcgtcgacgccgacggccgc 476 |||||||||||||| ||||||||| Sbjct: 1081 agccgcgtcgacgcggacggccgc 1104
>ref|XM_474613.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2316 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1085 tcagggccgcctccagcctcggct 1062
>gb|AC146328.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0018J01, complete sequence Length = 82510 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 29405 cgtcgccgccatcagggccg 29386
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence Length = 179038 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 173952 ttcgaccccctgctgcccaccatg 173929
>gb|DQ177687.1| Uncultured bacterium clone 4731 putative membrane-bound nitrate reductase (narG) gene, partial cds Length = 650 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cggccgcctccgcatcgcgc 489 |||||||||||||||||||| Sbjct: 298 cggccgcctccgcatcgcgc 279
>ref|NM_173672.1| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 6 (PPIL6), mRNA Length = 1108 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 66 ggcccgcacggctgcggcct 47
>ref|XM_536664.2| PREDICTED: Canis familiaris sterol regulatory element binding transcription factor 1, transcript variant 1 (SREBF1), mRNA Length = 3957 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 cggccgcctccgcatcgcgccgca 493 ||||||||||| |||||||||||| Sbjct: 2686 cggccgcctcctcatcgcgccgca 2663
>ref|XM_859549.1| PREDICTED: Canis familiaris sterol regulatory element binding transcription factor 1, transcript variant 2 (SREBF1), mRNA Length = 4056 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 cggccgcctccgcatcgcgccgca 493 ||||||||||| |||||||||||| Sbjct: 2785 cggccgcctcctcatcgcgccgca 2762
>ref|XM_500810.1| Yarrowia lipolytica CLIB122, YALI0B12694g predicted mRNA Length = 6552 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gtcaagtccaagaagaagga 81 |||||||||||||||||||| Sbjct: 3445 gtcaagtccaagaagaagga 3464
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 accgcctgctgcccaccatg 209 |||||||||||||||||||| Sbjct: 1627962 accgcctgctgcccaccatg 1627981
>emb|AL109947.19|HSJ919F19 Human DNA sequence from clone RP5-919F19 on chromosome 6q16.3-22.1 Contains the PPIL6 gene for peptidylprolyl isomerase (cyclophilin)-like 6 protein, the SMPD2 gene for sphingomyelin phosphodiesterase 2 neutral membrane (neutral sphingomyelinase), the MICAL1 gene for microtubule associated monoxygenase, calponin and LIM domain containing 1, the ZNF450 gene for zinc finger protein 450 and three CpG islands, complete sequence Length = 128960 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 39720 ggcccgcacggctgcggcct 39739
>ref|XM_965617.1| PREDICTED: Tribolium castaneum similar to CG12913-PA (LOC659298), mRNA Length = 4707 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 aggccgtcctcgaccaccac 413 |||||||||||||||||||| Sbjct: 4621 aggccgtcctcgaccaccac 4640
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 453 agccgcgtcgacgccgacggccgc 476 |||||||||||||| ||||||||| Sbjct: 20723 agccgcgtcgacgcggacggccgc 20746
>gb|BC038716.1| Homo sapiens peptidylprolyl isomerase (cyclophilin)-like 6, mRNA (cDNA clone MGC:41939 IMAGE:5268756), complete cds Length = 1108 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 66 ggcccgcacggctgcggcct 47
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 562 aggtgctcgaccgcatccgcgcct 585 ||||||||||| |||||||||||| Sbjct: 288750 aggtgctcgactgcatccgcgcct 288727
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 tcatcgaggccgtcctcgac 407 |||||||||||||||||||| Sbjct: 194448 tcatcgaggccgtcctcgac 194467 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tccgagatcaacaccaaccc 451 |||||||||||||||||||| Sbjct: 58944 tccgagatcaacaccaaccc 58925
>emb|AL663013.4|OSJN00214 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence Length = 129608 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 72303 tcagggccgcctccagcctcggct 72280
>gb|BC026359.1| Homo sapiens cDNA clone MGC:27054 IMAGE:4798147, complete cds Length = 1850 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 225 ggcccgcacggctgcggcct 206
>gb|BC026360.1| Homo sapiens cDNA clone MGC:27056 IMAGE:4799438, complete cds Length = 1850 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ggcccgcacggctgcggcct 529 |||||||||||||||||||| Sbjct: 225 ggcccgcacggctgcggcct 206
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 ggtgctcgaccgcatccgcg 582 |||||||||||||||||||| Sbjct: 2013415 ggtgctcgaccgcatccgcg 2013396
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 4433505 tggtggtgttcgacttcgac 4433486
>gb|AC021649.18| Homo sapiens 3 BAC RP11-321F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209521 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 tcgccgccatcagggccgcc 338 |||||||||||||||||||| Sbjct: 32003 tcgccgccatcagggccgcc 32022
>gb|AY122108.1| Drosophila melanogaster GH12004 full insert cDNA Length = 4316 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 3595 ttcgaccccctgctgcccaccatg 3618
>gb|AE006010.1| Caulobacter crescentus CB15 section 336 of 359 of the complete genome Length = 10305 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 256 agggcaagaccctccgcgacgtcgccga 283 ||||||||||||||||| ||| |||||| Sbjct: 6640 agggcaagaccctccgctacgccgccga 6667
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 cttcatcgaggccgtcctcgacca 409 |||||||||||||| ||||||||| Sbjct: 1762945 cttcatcgaggccgacctcgacca 1762922
>ref|NM_164887.1| Drosophila melanogaster CG31714-RA (CG31714), mRNA Length = 4733 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 4030 ttcgaccccctgctgcccaccatg 4053
>gb|AY089366.1| Drosophila melanogaster AT18808 full insert cDNA Length = 886 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 tcagcgacgccaaccgcttcttcatcga 394 |||||||||||||| |||||||||||| Sbjct: 375 tcagcgacgccaactccttcttcatcga 402
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 atcgaggccgtcctcgacca 409 |||||||||||||||||||| Sbjct: 1062805 atcgaggccgtcctcgacca 1062786
>gb|AC092233.1|AC092233 Drosophila melanogaster, chromosome 2L, region 30F-31B, BAC clone BACR29P12, complete sequence Length = 161446 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 157045 ttcgaccccctgctgcccaccatg 157068
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 4682170 tcagggccgcctccagcctcggct 4682147
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 4191405 cgtcgccgccatcagggccg 4191424
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 456 cgcgtcgacgccgacggccgcctc 479 ||||||||||||| |||||||||| Sbjct: 28475827 cgcgtcgacgccgtcggccgcctc 28475804
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 1517470 tcagggccgcctccagcctcggct 1517447
>gb|AF305968.1|AF305968 Lycopersicon esculentum putative acid phosphatase mRNA, complete cds Length = 942 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ctgcccgcccaacatgtgcaaggg 559 |||||| ||||||||||||||||| Sbjct: 470 ctgccctcccaacatgtgcaaggg 493
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 tcgaggccgtcctcgaccaccacg 414 |||||||| ||||||||||||||| Sbjct: 8404739 tcgaggccctcctcgaccaccacg 8404762 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 cagccgcgtcgacgccgacg 471 |||||||||||||||||||| Sbjct: 736604 cagccgcgtcgacgccgacg 736623
>gb|AY168637.1| Baboon herpesvirus 2 strain X313/860 DNA polymerase gene, partial cds Length = 1702 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 621 cgtggtggtgttcgacttcg 640
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 gctcgaccgcatccgcgcct 585 |||||||||||||||||||| Sbjct: 996303 gctcgaccgcatccgcgcct 996284
>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436D06 Length = 148246 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 4451 tggccggcggcgtggtggtgttcg 4428
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 ggtgctcgaccgcatccgcg 582 |||||||||||||||||||| Sbjct: 3481284 ggtgctcgaccgcatccgcg 3481265
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cgacggcctgggcgccaccg 180 |||||||||||||||||||| Sbjct: 5865638 cgacggcctgggcgccaccg 5865619
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 gtgctcgaccgcatccgcgc 583 |||||||||||||||||||| Sbjct: 19679 gtgctcgaccgcatccgcgc 19698
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 456 cgcgtcgacgccgacggccgcctc 479 ||||||||||||| |||||||||| Sbjct: 82860 cgcgtcgacgccgtcggccgcctc 82837
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 gtgctcgaccgcatccgcgc 583 |||||||||||||||||||| Sbjct: 103469 gtgctcgaccgcatccgcgc 103488
>emb|AJ459816.1|LES459816 Lycopersicon esculentum mRNA for putative phosphatase (psi14B gene) Length = 1103 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ctgcccgcccaacatgtgcaaggg 559 |||||| ||||||||||||||||| Sbjct: 465 ctgccctcccaacatgtgcaaggg 488
>emb|AJ459815.1|LES459815 Lycopersicon esculentum mRNA for putative phosphatase (psi14C gene) Length = 936 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 536 ctgcccgcccaacatgtgcaaggg 559 |||||| ||||||||||||||||| Sbjct: 482 ctgccctcccaacatgtgcaaggg 505
>gb|AC007993.15|AC007993 Homo sapiens chromosome 17, clone RP11-527L4, complete sequence Length = 141704 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 530 cggcacctgcccgcccaaca 549 |||||||||||||||||||| Sbjct: 24015 cggcacctgcccgcccaaca 23996
>dbj|AK106017.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B08, full insert sequence Length = 1342 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 tggccggcgtcgtggtggtgttcg 114 ||||||||| |||||||||||||| Sbjct: 1050 tggccggcggcgtggtggtgttcg 1073
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tcgagatggccggcgtcgtg 104 |||||||||||||||||||| Sbjct: 2905647 tcgagatggccggcgtcgtg 2905666
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggtggtgttcgacttcg 120 |||||||||||||||||||| Sbjct: 65465 cgtggtggtgttcgacttcg 65484
>gb|AE003627.4| Drosophila melanogaster chromosome 2L, section 36 of 83 of the complete sequence Length = 264225 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 91323 ttcgaccccctgctgcccaccatg 91300
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tggtggtgttcgacttcgac 122 |||||||||||||||||||| Sbjct: 4436031 tggtggtgttcgacttcgac 4436012
>gb|AC167667.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940123D9, complete sequence Length = 121336 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 gccgcgtcgacgccgacggccgcc 477 |||||| ||||||||||||||||| Sbjct: 84194 gccgcggcgacgccgacggccgcc 84171
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 catcgacgtcgacagcgacaactg 154 |||||||| ||||||||||||||| Sbjct: 2575673 catcgacgccgacagcgacaactg 2575696
>gb|AC005734.1|AC005734 Drosophila melanogaster DNA sequence (P1s DS00058 (D296), DS02068 (D297), and DS07249 (D318)), complete sequence Length = 155335 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 ttcgaccgcctgctgcccaccatg 209 ||||||| |||||||||||||||| Sbjct: 29616 ttcgaccccctgctgcccaccatg 29593
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 cgtcgccgccatcagggccg 336 |||||||||||||||||||| Sbjct: 4200099 cgtcgccgccatcagggccg 4200118
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gtcaagtccaagaagaagga 81 |||||||||||||||||||| Sbjct: 1696426 gtcaagtccaagaagaagga 1696445
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 102 gtggtggtgttcgacttcgacaagaccatcatcgacgtcgacagcgacaactgggt 157 ||||| || |||||||| || ||||||||||| || ||||||| || |||||||| Sbjct: 118599 gtggttgttttcgactttgataagaccatcattgatatcgacagtgataactgggt 118544
>gb|AC129720.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683F12, complete sequence Length = 144455 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 tcagggccgcctacagcctcggct 351 |||||||||||| ||||||||||| Sbjct: 111550 tcagggccgcctccagcctcggct 111527 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,476,665 Number of Sequences: 3902068 Number of extensions: 3476665 Number of successful extensions: 87043 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81422 Number of HSP's gapped (non-prelim): 5611 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
