>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence
          Length = 39360

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    agctgctggagtcgctcccg 105
             ||||||||||||||||||||
Sbjct: 19213 agctgctggagtcgctcccg 19194

>gb|M30439.1|MUSMK1A Mouse intronless potassium channel gene MK1
          Length = 2222

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  gcctggggagctgctggagt 97
           ||||||||||||||||||||
Sbjct: 146 gcctggggagctgctggagt 165

>ref|NM_106672.3| Arabidopsis thaliana cytochrome-c oxidase AT1G80230 mRNA, complete
           cds
          Length = 937

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  cgccgtcgggtcctgcgcg 78
           |||||||||||||||||||
Sbjct: 139 cgccgtcgggtcctgcgcg 157

>ref|XM_480048.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1776

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 43  ttccccgtctcgttccgcgccgt 65
           |||||||||||||||| ||||||
Sbjct: 349 ttccccgtctcgttcctcgccgt 371

>ref|XM_870304.1| PREDICTED: Bos taurus similar to testes-specific heterogenous
           nuclear ribonucleoprotein G-T (LOC617969), mRNA
          Length = 939

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 57  ccgcgccgtcgggtcctgcgcgc 79
           ||||||||||||| |||||||||
Sbjct: 488 ccgcgccgtcgggccctgcgcgc 510

>ref|NM_024017.4| Homo sapiens homeobox B9 (HOXB9), mRNA
          Length = 2711

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 572 gcgcgcctggggagctgct 590

>ref|XM_859652.1| PREDICTED: Canis familiaris similar to homeo box B9, transcript
           variant 3 (LOC608958), mRNA
          Length = 832

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 432 gcgcgcctggggagctgct 450

>ref|XM_846870.1| PREDICTED: Canis familiaris similar to homeo box B9, transcript
           variant 2 (LOC608958), mRNA
          Length = 1028

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 448 gcgcgcctggggagctgct 466

>ref|XM_811456.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508387.150) partial mRNA
          Length = 2817

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 86  agctgctggagtcgctccc 104
           |||||||||||||||||||
Sbjct: 401 agctgctggagtcgctccc 419

>ref|XM_814822.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506789.150) partial mRNA
          Length = 2526

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 86  agctgctggagtcgctccc 104
           |||||||||||||||||||
Sbjct: 116 agctgctggagtcgctccc 134

>gb|BC114040.1| Bos taurus similar to testes-specific heterogenous nuclear
           ribonucleoprotein G-T, mRNA (cDNA clone MGC:137496
           IMAGE:8022749), complete cds
          Length = 1578

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 57  ccgcgccgtcgggtcctgcgcgc 79
           ||||||||||||| |||||||||
Sbjct: 623 ccgcgccgtcgggccctgcgcgc 645

>gb|AC112215.3| Homo sapiens chromosome 3 clone RP11-844E22, complete sequence
          Length = 199310

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 13   gccaggaccacggacggccacaaccct 39
            |||||||||||||| ||||| ||||||
Sbjct: 2214 gccaggaccacggagggccagaaccct 2240

>emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I16 on chromosome 1p35.1-35.3
             Contains the 3' end of the gene PTPRU for protein tyrosine
             phosphatase receptor type U and a novel gene, complete
             sequence
          Length = 120385

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    gcctggggagctgctggag 96
             |||||||||||||||||||
Sbjct: 83515 gcctggggagctgctggag 83497

>gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, complete sequence
          Length = 187386

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    gcgcgcctggggagctgct 92
             |||||||||||||||||||
Sbjct: 63597 gcgcgcctggggagctgct 63615

>dbj|AK056123.1| Homo sapiens cDNA FLJ31561 fis, clone NT2RI2001410
          Length = 2477

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 351 gcgcgcctggggagctgct 369

>gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence
          Length = 175388

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    gcgcgcctggggagctgct 92
             |||||||||||||||||||
Sbjct: 93371 gcgcgcctggggagctgct 93389

>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
             sequence
          Length = 102585

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    cgccgtcgggtcctgcgcg 78
             |||||||||||||||||||
Sbjct: 50157 cgccgtcgggtcctgcgcg 50175

>gb|BT006403.1| Arabidopsis thaliana At1g80230 gene, complete cds
          Length = 516

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 60 cgccgtcgggtcctgcgcg 78
          |||||||||||||||||||
Sbjct: 42 cgccgtcgggtcctgcgcg 60

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 5       cgctcgccgccaggaccacggacggcc 31
               |||||||||||||||| |||| |||||
Sbjct: 1870870 cgctcgccgccaggacgacggtcggcc 1870844

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 43      ttccccgtctcgttccgcgccgt 65
               |||||||||||||||| ||||||
Sbjct: 2376159 ttccccgtctcgttcctcgccgt 2376181

>emb|BX817450.1|CNS0AEEM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL23ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 910

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  cgccgtcgggtcctgcgcg 78
           |||||||||||||||||||
Sbjct: 100 cgccgtcgggtcctgcgcg 118

>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    gcgcgcctggggagctgct 92
             |||||||||||||||||||
Sbjct: 67460 gcgcgcctggggagctgct 67478

>gb|AC079605.13|AC079605 Arabidopsis thaliana chromosome 1 BAC T32G9 genomic sequence, complete
             sequence
          Length = 104807

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    cgccgtcgggtcctgcgcg 78
             |||||||||||||||||||
Sbjct: 92706 cgccgtcgggtcctgcgcg 92724

>gb|AY014295.1|AY014295S1 Homo sapiens HOXB9 gene, exon 1
          Length = 668

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 447 gcgcgcctggggagctgct 465

>gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, complete sequence
          Length = 82882

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    ggccacaaccctatcttcc 46
             |||||||||||||||||||
Sbjct: 33559 ggccacaaccctatcttcc 33577

>gb|AC129959.6| Bos taurus, clone RP42-518P7, complete sequence
          Length = 211988

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     gcgcgcctggggagctgct 92
              |||||||||||||||||||
Sbjct: 143344 gcgcgcctggggagctgct 143326

>gb|AY086953.1| Arabidopsis thaliana clone 29901 mRNA, complete sequence
          Length = 825

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  cgccgtcgggtcctgcgcg 78
           |||||||||||||||||||
Sbjct: 139 cgccgtcgggtcctgcgcg 157

>gb|AC018460.2|AC018460 Arabidopsis thaliana chromosome I BAC F11O6 genomic sequence, complete
             sequence
          Length = 110619

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    cgccgtcgggtcctgcgcg 78
             |||||||||||||||||||
Sbjct: 11718 cgccgtcgggtcctgcgcg 11736

>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0025F03
          Length = 138042

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 43    ttccccgtctcgttccgcgccgt 65
             |||||||||||||||| ||||||
Sbjct: 52129 ttccccgtctcgttcctcgccgt 52151

>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0473D02
          Length = 146185

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     ttccccgtctcgttccgcgccgt 65
              |||||||||||||||| ||||||
Sbjct: 123658 ttccccgtctcgttcctcgccgt 123680

>dbj|AB018112.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAB16
          Length = 70475

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 60   cgccgtcgggtcctgcgcg 78
            |||||||||||||||||||
Sbjct: 6751 cgccgtcgggtcctgcgcg 6769

>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
              sequence
          Length = 116905

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     cgccgtcgggtcctgcgcg 78
              |||||||||||||||||||
Sbjct: 107721 cgccgtcgggtcctgcgcg 107703

>gb|AC006208.3| Homo sapiens 3 PAC RP4-793P23 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 123943

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 13    gccaggaccacggacggccacaaccct 39
             |||||||||||||| ||||| ||||||
Sbjct: 60735 gccaggaccacggagggccagaaccct 60761

>gb|BC015565.1| Homo sapiens homeobox B9, mRNA (cDNA clone MGC:12925
           IMAGE:4139164), complete cds
          Length = 2340

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  gcgcgcctggggagctgct 92
           |||||||||||||||||||
Sbjct: 463 gcgcgcctggggagctgct 481

>gb|M37984.1|HUMTROC Human slow twitch skeletal muscle/cardiac muscle troponin C gene,
            complete cds
          Length = 4567

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 13   gccaggaccacggacggccacaaccct 39
            |||||||||||||| ||||| ||||||
Sbjct: 3183 gccaggaccacggagggccagaaccct 3157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 657,601
Number of Sequences: 3902068
Number of extensions: 657601
Number of successful extensions: 43574
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43466
Number of HSP's gapped (non-prelim): 108
length of query: 111
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 90
effective length of database: 17,151,101,840
effective search space: 1543599165600
effective search space used: 1543599165600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)