ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart20b05 |
|---|---|
| Clone Library Name | barley_pub |
>DNAE2_COREF (Q8FRX6) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1073 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/32 (50%), Positives = 17/32 (53%) Frame = +3 Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELARGE 401 G H G SG + D P DVVPTE AR E Sbjct: 525 GQPRHLGIHSGGMVICDRPIADVVPTEWARME 556
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101 T+AA + ++ VRRTA G +S+VVS TR Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415
>INCE_HUMAN (Q9NQS7) Inner centromere protein| Length = 923 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = -3 Query: 397 PRASSVGT---TSKAGWSRTSPGPENAPRWWEMPW 302 P+ VGT SK ++ SPGP ++P + + PW Sbjct: 243 PKGQGVGTGRSASKLRIAQVSPGPRDSPAFPDSPW 277
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 400 SPRASSVGTTSKAGWSRTSPGPENAPRWW 314 SP +SS G++ +G SPGP APR W Sbjct: 174 SPASSSSGSSGSSG----SPGPSAAPRRW 198
>SYS_HUMAN (P49591) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 513 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +3 Query: 111 ETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHR 260 E DD+ P VL D +DA A + + + + +DE +L+ + R Sbjct: 71 EPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAER 120
>ZN446_HUMAN (Q9NWS9) Zinc finger protein 446| Length = 450 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 16/98 (16%) Frame = +3 Query: 99 CRVLETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHRRP---- 266 CR L + ++ +GPP AA L TPA V G +P+ P Sbjct: 262 CRSLRSGNESEGPPGCPEAQPPQGPGPAAWEGLSGAATPAPTVRPGTPPVPTQPTPAETR 321 Query: 267 ------------CXXXXXXXXXXXXGISHHRGAFSGPG 344 C + HHR SGPG Sbjct: 322 LEPAATPRKPYTCEQCGRGFDWKSVFVIHHRTHTSGPG 359
>QUEF_XANOR (Q5GV34) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)| Length = 271 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +3 Query: 96 SCRVLETTSDDQGPPNAVLLTQDDQSDAAAEVTLPALL 209 S L+ + DD GPPNA LT Q EV ALL Sbjct: 137 SIDALDVSIDDYGPPNAAYLTAQAQ-PVVEEVLTSALL 173
>PROB_THIDA (Q3SJS7) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 374 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = +3 Query: 117 TSDDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAVDEGVLRLPSHRRP 266 T+D +G +A L +Q A AE +L + A+ EG+ RL +RP Sbjct: 22 TADGRGLDHAALSRWAEQIAALAEQGKEVVLVSSGAIAEGIARLGWKKRP 71
>DNAE2_CORDI (Q6NJ04) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1039 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395 G H G +G + D P DVVPTE AR Sbjct: 495 GQPRHLGIHAGGMVICDRPIADVVPTEWAR 524
>DNAE2_NOCFA (Q5Z1D1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1146 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +3 Query: 306 GISHHRGAFSGPGEVRDHPAFDVVPTELAR 395 G+ H G SG + D P DV P E AR Sbjct: 586 GLPRHMGIHSGGMVICDRPIADVCPVEWAR 615
>UCRI_CHRVI (O31214) Ubiquinol-cytochrome c reductase iron-sulfur subunit (EC| 1.10.2.2) (Rieske iron-sulfur protein) (RISP) Length = 207 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -3 Query: 400 SPRASSVGTTSKAGWSRTSPGPENAPRWWEMPWWCAH 290 S RA + G +A S+ PG +W MP W H Sbjct: 50 SARARAAGAPVEADISKLEPGALLRVKWRGMPVWVVH 86
>BCCP_SHIFL (P0ABE1) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251 A ++ Q QS+AAA T+P++ PA A G ++R P Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86
>BCCP_ECOLI (P0ABD8) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251 A ++ Q QS+AAA T+P++ PA A G ++R P Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86
>BCCP_ECOL6 (P0ABD9) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251 A ++ Q QS+AAA T+P++ PA A G ++R P Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86
>BCCP_ECO57 (P0ABE0) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +3 Query: 144 AVLLTQDDQSDAAAEVTLPALLTPAVAVDEG-VLRLP 251 A ++ Q QS+AAA T+P++ PA A G ++R P Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSP 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,326,539 Number of Sequences: 219361 Number of extensions: 458768 Number of successful extensions: 1487 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1487 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
