>GP107_HUMAN (Q5VW38) Protein GPR107 precursor (Lung seven transmembrane|
           receptor 1)
          Length = 600

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 144 IRSTAIRGDPRTIIPLDQFGFSRHGVLELNVSGIAFDPPASQDLDL 281
           +   A++ D R  + L+ FGF + G + +NVS ++ + P  +D+ +
Sbjct: 41  VHHLALKDDVRHKVHLNTFGFFKDGYMVVNVSSLSLNEPEDKDVTI 86

>GP107_MOUSE (Q8BUV8) Protein GPR107 precursor|
          Length = 551

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 144 IRSTAIRGDPRTIIPLDQFGFSRHGVLELNVSGIAFDPPASQDLDLSQFGFFL 302
           +   A++ D R  + L+ FGF + G + +NVS ++ + P       ++ GF L
Sbjct: 35  VHHLALKDDVRHKVHLNTFGFFKDGYMVVNVSSLSVNEPEGATDKDAEIGFSL 87

>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding|
           SR-like protein RA4)
          Length = 1147

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 463 VKEEERATSTPAGLADGRRRSKE*ASLTRSDWSAQVTSRSWSWRRTWPQASRVERKKPNW 284
           + +  ++ S  A  +  RRRS+   S +R     +  SRS   RR  P++   ER+    
Sbjct: 428 MSDNRKSRSRSASRSPKRRRSRS-GSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREK 486

Query: 283 ERSRSCEAGGSKAMPETLS--SSTPW 212
           ER R  + G  +  PET S  S+T W
Sbjct: 487 ERERR-QKGLPQVKPETASVCSTTLW 511

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -2

Query: 421 ADGRRRSKE*ASLTRSDWSAQVTSRSWSWRRTWPQASRVERKKPNWERSRSCEAGGSKAM 242
           ++ R RS+   S  R    ++ +SRS S  R+ P+ SR E K  +  RSRS  A   K+ 
Sbjct: 210 SNSRSRSRS-RSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSR 268

Query: 241 PETLSSSTPWR--EKPNWSSGMMVRGSPR 161
             + S     R    P  S     +GSPR
Sbjct: 269 SPSRSPKKVDRSPSPPRGSRSPSEKGSPR 297

>SYV_AERPE (Q9YAZ0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 837

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 271 SCEAGGSKAMPETLSSSTPWREKPNWSS 188
           +CE  G+K +PE      PW E+P W S
Sbjct: 438 TCEKCGAKLVPEPGRYYRPWAEEPPWDS 465

>YDHB_ECOLI (P0ACR2) Putative HTH-type transcriptional regulator ydhB|
          Length = 310

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 388 SLTRSDWSAQVTSRSWSWRRTWPQASRVERKKPNWERSRSCEAGGSKAMPETLSSSTPWR 209
           SL R D     TSR+   R TW   ++     P+WE S +C + G          + PW 
Sbjct: 195 SLVRED-----TSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWL 249

Query: 208 EKPNW 194
            +  W
Sbjct: 250 NEGKW 254

>YDHB_ECO57 (P0ACR3) Putative HTH-type transcriptional regulator ydhB|
          Length = 310

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 388 SLTRSDWSAQVTSRSWSWRRTWPQASRVERKKPNWERSRSCEAGGSKAMPETLSSSTPWR 209
           SL R D     TSR+   R TW   ++     P+WE S +C + G          + PW 
Sbjct: 195 SLVRED-----TSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWL 249

Query: 208 EKPNW 194
            +  W
Sbjct: 250 NEGKW 254

>NU4M_RHISA (O99825) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 433

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 273 LDLSQFGFFLSTLDAWGHVLRQLQDLEVTCALQSDLVKL-AYS 398
           LDL +F F L  +  WG VL     + + C  Q+D+  L AYS
Sbjct: 229 LDLLKFSFVLIVISMWGAVL-----ISIFCLYQNDIKSLIAYS 266

>IF1A2_METAC (Q8TR33) Translation initiation factor 1A-2 (aIF-1A-2)|
          Length = 105

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/65 (26%), Positives = 24/65 (36%)
 Frame = -2

Query: 490 PGSETRNTWVKEEERATSTPAGLADGRRRSKE*ASLTRSDWSAQVTSRSWSWRRTWPQAS 311
           PGS+ +  W++E +    TP                    W  Q T     W+ T PQ  
Sbjct: 57  PGSKNKKMWIREGDVVIVTP--------------------WEIQDTKADVIWKYTRPQIE 96

Query: 310 RVERK 296
            +ERK
Sbjct: 97  WLERK 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.122    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,332,686
Number of Sequences: 219361
Number of extensions: 495388
Number of successful extensions: 2121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)