ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart20b03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 428 bits (216), Expect = e-117 Identities = 333/372 (89%) Strand = Plus / Plus Query: 134 ggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatcccgctcga 193 ||||||||||||||| ||| |||||||| | ||||||||||| |||||||||||| || Sbjct: 30000 ggcggccgagatccgagagaccgcgatccgggccgacccgcgcagcatcatcccgctgga 30059 Query: 194 ccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgccttcga 253 | ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| Sbjct: 30060 cgagttcggcttctcccactcgggcgtgctggagctcaacgtctccggcatcgccttcga 30119 Query: 254 cccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccaccctcga 313 |||||||||||| ||| || |||||||||||| ||||||||||||||||||| ||||| Sbjct: 30120 cccgccggcctccgcggagctggacctctcccagctcggcttcttcctctccacgctcga 30179 Query: 314 cgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgctccagtc 373 |||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 30180 cgcctgggttcacgtcctccgccaactccaggaccttgacgtcacctgcgcgctccagtc 30239 Query: 374 cgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccccgccgg 433 ||| |||||||||||||||| ||||||||||| |||||||||| || ||||||||||||| Sbjct: 30240 cgagctcgtcaagctcgcctcctccttcgacctcctccgcccgccctccaaccccgccgg 30299 Query: 434 cgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccccggcca 493 |||||||||||||||||||||||||||| || || ||||||||| ||| |||||||| Sbjct: 30300 cgtcgaggtcgcccgctcctcctccttctccaccgccttccgcgtcaacgagcccggcca 30359 Query: 494 gtacacgctcgt 505 |||||||||||| Sbjct: 30360 gtacacgctcgt 30371
>ref|XM_493716.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1712 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Plus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 213 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 272 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 273 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 332 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 333 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 392 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 393 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 452 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 453 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 512 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 513 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 572 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 573 agggcagtacacgctcgtc 591
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Minus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 48972 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 48913 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 48912 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 48853 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 48852 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 48793 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 48792 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 48733 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 48732 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 48673 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 48672 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 48613 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 48612 agggcagtacacgctcgtc 48594
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Minus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 1728757 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 1728698 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 1728697 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 1728638 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 1728637 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 1728578 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 1728577 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 1728518 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 1728517 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 1728458 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 1728457 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 1728398 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 1728397 agggcagtacacgctcgtc 1728379
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Minus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 131928 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 131869 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 131868 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 131809 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 131808 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 131749 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 131748 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 131689 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 131688 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 131629 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 131628 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 131569 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 131568 agggcagtacacgctcgtc 131550
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Minus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 53906 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 53847 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 53846 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 53787 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 53786 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 53727 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 53726 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 53667 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 53666 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 53607 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 53606 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 53547 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 53546 agggcagtacacgctcgtc 53528
>dbj|AK105429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E04, full insert sequence Length = 1767 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Plus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 138 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 197 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 198 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 257 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 258 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 317 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 318 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 377 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 378 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 437 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 438 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 497 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 498 agggcagtacacgctcgtc 516
>dbj|AK100206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041H11, full insert sequence Length = 1712 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Plus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 213 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 272 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 273 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 332 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 333 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 392 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 393 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 452 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 453 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 512 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 513 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 572 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 573 agggcagtacacgctcgtc 591
>dbj|AK072859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143I01, full insert sequence Length = 1845 Score = 379 bits (191), Expect = e-102 Identities = 332/379 (87%) Strand = Plus / Plus Query: 128 cccggcggcggccgagatccgctcgacggcgatccgcggcgacccgcgcaccatcatccc 187 |||||||||||| |||||||| ||||| |||||| |||||||||| | ||||||||| Sbjct: 233 cccggcggcggcggagatccgggagacggtgatccggagcgacccgcggagcatcatccc 292 Query: 188 gctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtctccggcatcgc 247 ||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 293 gctcgacgagttcgggttctcccactcgggcgtcctcgagctcaacgtctccggcatcgc 352 Query: 248 cttcgacccgccggcctcacaggacctcgacctctcccagttcggcttcttcctctccac 307 |||||||||||||||||| || ||||||||||||||| | || |||||||||||||| Sbjct: 353 cttcgacccgccggcctcctccgagctcgacctctcccagctgggattcttcctctccac 412 Query: 308 cctcgacgcctggggccacgtcctccgccagctccaggacctcgaggtcacctgcgcgct 367 ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 413 gctcgacgcctgggtgcacgtcctccgccagctgcaggatctcgacgtcacctgcgcgct 472 Query: 368 ccagtccgacctcgtcaagctcgcctactccttcgaccgcctccgcccgtccgccaaccc 427 |||| |||||||||||||||||||||||||||||||||||||| | ||| | ||||||| Sbjct: 473 ccaggccgacctcgtcaagctcgcctactccttcgaccgcctcaggccgccatccaaccc 532 Query: 428 cgccggcgtcgaggtcgcccgctcctcctccttcacccacgtattccgcgtctccgaccc 487 |||||||||||||||||||||||| || |||||| || || |||| ||||||||| || Sbjct: 533 cgccggcgtcgaggtcgcccgctcatcatccttctccaccgccttccccgtctccgagcc 592 Query: 488 cggccagtacacgctcgtc 506 || ||||||||||||||| Sbjct: 593 agggcagtacacgctcgtc 611
>emb|AJ786317.1| Streptomyces fradiae putative neomycin biosynthetic gene cluster, strain ATCC 10745 Length = 42149 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 121 tggcggacccggcggcggccgag 143 ||||||||||||||||||||||| Sbjct: 41085 tggcggacccggcggcggccgag 41107
>gb|AY110494.1| Zea mays CL464_-1 mRNA sequence Length = 2737 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 103 tggccgtcctcgcgctgctggcg 125 ||||||||||||||||||||||| Sbjct: 409 tggccgtcctcgcgctgctggcg 431
>ref|XM_465491.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 107 cgtcctcgcgctgctggcggacccggcggcggcc 140 ||||||||||||||||||| |||||||||||| Sbjct: 91 cgtcctcgcgctgctggcgtcaccggcggcggcc 124
>emb|X96856.1|PPPPEG1 P.persica ppEG1 gene Length = 5445 Score = 44.1 bits (22), Expect = 0.44 Identities = 52/62 (83%) Strand = Plus / Plus Query: 178 ccatcatcccgctcgaccagttcggcttctcccgccacggcgtgctcgagctcaacgtct 237 |||||||||| ||||| ||||||||||| ||| | | ||| |||||||||||||||| Sbjct: 5299 ccatcatccccttcgacgagttcggcttcacccacaaaggccgcctcgagctcaacgtct 5358 Query: 238 cc 239 || Sbjct: 5359 cc 5360
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Minus Query: 107 cgtcctcgcgctgctggcggacccggcggcggcc 140 ||||||||||||||||||| |||||||||||| Sbjct: 15559872 cgtcctcgcgctgctggcgtcaccggcggcggcc 15559839
>dbj|AP005068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0644G05 Length = 143119 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Minus Query: 107 cgtcctcgcgctgctggcggacccggcggcggcc 140 ||||||||||||||||||| |||||||||||| Sbjct: 87432 cgtcctcgcgctgctggcgtcaccggcggcggcc 87399
>dbj|AK108772.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H07, full insert sequence Length = 1156 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 107 cgtcctcgcgctgctggcggacccggcggcggcc 140 ||||||||||||||||||| |||||||||||| Sbjct: 91 cgtcctcgcgctgctggcgtcaccggcggcggcc 124
>gb|AC006712.2| Caenorhabditis elegans cosmid Y119C1B, complete sequence Length = 56772 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 ccacgtcctccgccagctcca 343 ||||||||||||||||||||| Sbjct: 49875 ccacgtcctccgccagctcca 49895
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 102 ctggccgtcctcgcgctgctggcgg 126 ||||||||| ||||||||||||||| Sbjct: 615727 ctggccgtcgtcgcgctgctggcgg 615751
>ref|NM_001026549.1| Caenorhabditis elegans Y119C1B.11 (Y119C1B.11) mRNA, complete cds Length = 240 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 ccacgtcctccgccagctcca 343 ||||||||||||||||||||| Sbjct: 161 ccacgtcctccgccagctcca 141
>ref|NM_197227.1| Oryza sativa (japonica cultivar-group) putative hypersensitivity-related (hsr)protein (OSJNBb0073N24.11), mRNA Length = 1662 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcaccatcatcccgctcgac 194 |||||||||||||||||||| Sbjct: 683 gcaccatcatcccgctcgac 702
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gtcctcgcgctgctggcgga 127 |||||||||||||||||||| Sbjct: 3114798 gtcctcgcgctgctggcgga 3114779
>emb|AL032656.3|CEY106G6E Caenorhabditis elegans YAC Y106G6E, complete sequence Length = 37704 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cacgtcctccgccagctcca 343 |||||||||||||||||||| Sbjct: 4043 cacgtcctccgccagctcca 4024
>emb|AL032645.1|CEY67A6A Caenorhabditis elegans YAC Y67A6A, complete sequence Length = 27185 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cacgtcctccgccagctcca 343 |||||||||||||||||||| Sbjct: 7949 cacgtcctccgccagctcca 7968
>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete sequence Length = 130058 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcaccatcatcccgctcgac 194 |||||||||||||||||||| Sbjct: 58863 gcaccatcatcccgctcgac 58882
>emb|CR599132.1| full-length cDNA clone CS0DL007YP19 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1771 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 gcttctcccgccacggcgtgctcg 225 ||||||||||||||||||| |||| Sbjct: 49 gcttctcccgccacggcgtcctcg 26
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 417 tccgccaaccccgccggcgtcgaggtcg 444 |||||||||||||||||| || |||||| Sbjct: 4383776 tccgccaaccccgccggcctcaaggtcg 4383749
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggacccggcggcggccg 141 |||||||||||||||||||| Sbjct: 351957 ggcggacccggcggcggccg 351938
>gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C10, complete sequence Length = 143084 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 gcttctcccgccacggcgtgctcg 225 ||||||||||||||||||| |||| Sbjct: 108937 gcttctcccgccacggcgtcctcg 108960
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cgtcctcgcgctgctggcgg 126 |||||||||||||||||||| Sbjct: 668531 cgtcctcgcgctgctggcgg 668550
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcaccatcatcccgctcgac 194 |||||||||||||||||||| Sbjct: 18697585 gcaccatcatcccgctcgac 18697604
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 cgcgctccagtccgacctcg 381 |||||||||||||||||||| Sbjct: 4674560 cgcgctccagtccgacctcg 4674541
>gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, complete sequence Length = 217781 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 gcttctcccgccacggcgtgctcg 225 ||||||||||||||||||| |||| Sbjct: 77484 gcttctcccgccacggcgtcctcg 77507
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ctggccgtcctcgcgctgctggcg 125 ||||||| |||||||||||||||| Sbjct: 1735449 ctggccggcctcgcgctgctggcg 1735472
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcgacccgcgcaccatcatc 185 |||||||||||||||||||| Sbjct: 2622608 gcgacccgcgcaccatcatc 2622627
>emb|AL117204.1|CEY116A8C Caenorhabditis elegans YAC Y116A8C, complete sequence Length = 260341 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 cacgtcctccgccagctcca 343 |||||||||||||||||||| Sbjct: 165592 cacgtcctccgccagctcca 165573 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cacgtcctccgccagctcca 343 |||||||||||||||||||| Sbjct: 163390 cacgtcctccgccagctcca 163409
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 cgacccgcgcaccatcatcccgctcgac 194 ||||||||||||||||| ||||||||| Sbjct: 2436782 cgacccgcgcaccatcaagccgctcgac 2436755
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 gcaccatcatcccgctcgac 194 |||||||||||||||||||| Sbjct: 18708438 gcaccatcatcccgctcgac 18708457
>gb|AC138151.3| Mus musculus BAC clone RP24-294E11 from 7, complete sequence Length = 203368 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcctccgccagctccaggac 347 |||||||||||||||||||| Sbjct: 53438 tcctccgccagctccaggac 53419
>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119, complete sequence Length = 109743 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 cttcctctccaccctcgacg 315 |||||||||||||||||||| Sbjct: 88170 cttcctctccaccctcgacg 88151 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,293,955 Number of Sequences: 3902068 Number of extensions: 3293955 Number of successful extensions: 74572 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 72611 Number of HSP's gapped (non-prelim): 1953 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
