ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19h12 |
|---|---|
| Clone Library Name | barley_pub |
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 30.0 bits (66), Expect = 1.5 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%) Frame = +2 Query: 95 LETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPD---GENIVLSHGAPTP 244 LE + + P AV++ DD+S AA P LP P+ G S +PTP Sbjct: 222 LEPQPNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTP 274
>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>QUEF_XANOR (Q5GV34) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)| Length = 271 Score = 29.3 bits (64), Expect = 2.6 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 8/56 (14%) Frame = +2 Query: 95 LETTSDDQGPPNAVLLTQDDQ-------SDAAADVTLPALPTPDGENIVLSH-GAP 238 L+ + DD GPPNA LT Q + A P PD ++ L + GAP Sbjct: 141 LDVSIDDYGPPNAAYLTAQAQPVVEEVLTSALLKSNCPVTGQPDWASVTLHYRGAP 196
>RCP1_SYNY3 (Q55169) Response regulator rcp1| Length = 147 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 107 SDDQGPPNAVLLTQDDQSDAAADVTLPALPTPDGENIVLSHG 232 SD+ PP +LL +D ++D+ + T D E I+L G Sbjct: 2 SDESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDG 43
>TFDB_RALEJ (P27138) 2,4-dichlorophenol 6-monooxygenase (EC 1.14.13.20)| (2,4-dichlorophenol hydroxylase) (2,4-DCP hydroxylase) Length = 598 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = -3 Query: 141 RRTALGGPWSSEVVSRTRQLAPPRRERSSTARVASRAI 28 R T+L + ++VS R++ + ERSS RV SRAI Sbjct: 561 RATSLPADAAGDLVSAMRRILGRQSERSSALRVTSRAI 598
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 152 DQSDAAADVTLPALPTPDGENIVLSHGAPTPMLRLPSH 265 D AA + + P++PTP G + H T M ++ H Sbjct: 2302 DSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKH 2339
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = +2 Query: 95 LETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 LE ++ + P AV++ DD+S A P LP P+ +P+P Sbjct: 215 LEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEHSPSESQPSSPSP 264
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -3 Query: 177 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 88 T+AA + ++ VRRTA G +S+VVS TR Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415
>PCDG8_HUMAN (Q9Y5G5) Protocadherin gamma A8 precursor (PCDH-gamma-A8)| Length = 932 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPDGENIVLS 226 ++L T SD PP + ++ DQ+D A ++ PALPT + L+ Sbjct: 529 QLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 578
>PCDGA_PANTR (Q5DRC1) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>PCDG9_HUMAN (Q9Y5G4) Protocadherin gamma A9 precursor (PCDH-gamma-A9)| Length = 932 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPDGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 530 MQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>COBQ_COREF (Q8FP85) Cobyric acid synthase| Length = 493 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 236 VHHGSARYFRRPGWAEPEGSRQQ 168 VHHG R+ W E EG+R++ Sbjct: 389 VHHGQVRHHGEQTWIEGEGARRE 411
>YQ15_CAEEL (Q09230) Hypothetical protein C05C10.5| Length = 212 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 153 SSWVRRTALGGPWSSEVVSRTRQLAPPRRERSSTARVASR 34 S W R + L E++ R R +PP RE S R A R Sbjct: 33 SGWTRASELSEKGWRELLDRRRSQSPPPREPSPDVRRAIR 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,852,168 Number of Sequences: 219361 Number of extensions: 451736 Number of successful extensions: 1588 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1588 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
