ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart19h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2... 44 0.27
2gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.1
3ref|XM_482371.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
4gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA... 42 1.1
5gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.1
6emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete ... 42 1.1
7dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.1
8gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cos... 42 1.1
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
10ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA 42 1.1
11dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
12dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
13emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expres... 42 1.1
14ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predic... 40 4.2
15ref|XM_585315.2| PREDICTED: Bos taurus similar to CG3064-PB (LOC... 40 4.2
16ref|XM_420295.1| PREDICTED: Gallus gallus similar to hypothetica... 40 4.2
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
18gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage ... 40 4.2
19gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
20emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chro... 40 4.2
21gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxi... 40 4.2
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
23dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
24dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
25emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.2

>gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2) gene, complete cds
          Length = 2906

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 12   ctgctgtgcctgctacaatggc 33
            ||||||||||||||||||||||
Sbjct: 2460 ctgctgtgcctgctacaatggc 2481



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 50     gccgtgctgctcctctccctc 70
              |||||||||||||||||||||
Sbjct: 999802 gccgtgctgctcctctccctc 999822



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>ref|XM_482371.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 48 tcgccgtgctgctcctctccc 68
          |||||||||||||||||||||
Sbjct: 41 tcgccgtgctgctcctctccc 61



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>gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA, complete cds
          Length = 415

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 34 gccgtggtgctcctctccctcctgg 58



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 37      gctcgccaccctcgccgtgct 57
               |||||||||||||||||||||
Sbjct: 3365831 gctcgccaccctcgccgtgct 3365851



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>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 37     gctcgccaccctcgccgtgctgctc 61
              ||||||||||||||||| |||||||
Sbjct: 247473 gctcgccaccctcgccgggctgctc 247449



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 200     ccggacggcgaaaatatcgtgctga 224
               ||||||||||| |||||||||||||
Sbjct: 4844382 ccggacggcgagaatatcgtgctga 4844358



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>gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cosmid f21246, genomic sequence
          Length = 44679

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 50    gccgtgctgctcctctccctcctgg 74
             |||||| ||||||||||||||||||
Sbjct: 24550 gccgtggtgctcctctccctcctgg 24526



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 48       tcgccgtgctgctcctctccc 68
                |||||||||||||||||||||
Sbjct: 19676173 tcgccgtgctgctcctctccc 19676193



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>ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA
          Length = 415

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 34 gccgtggtgctcctctccctcctgg 58



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>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0007M04
          Length = 176293

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   tcgccgtgctgctcctctccc 68
            |||||||||||||||||||||
Sbjct: 5124 tcgccgtgctgctcctctccc 5144



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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 48     tcgccgtgctgctcctctccc 68
              |||||||||||||||||||||
Sbjct: 151733 tcgccgtgctgctcctctccc 151753



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>emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expressed in malignant melanoma,
          clone NN i5
          Length = 529

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 50 gccgtgctgctcctctccctcctgg 74
          |||||| ||||||||||||||||||
Sbjct: 72 gccgtggtgctcctctccctcctgg 96



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>ref|NM_187610.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 372 gctgctcctctccctcctgg 391



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>ref|XM_585315.2| PREDICTED: Bos taurus similar to CG3064-PB (LOC508527), mRNA
          Length = 7413

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 67   cctcctgggcggcgctagctgccg 90
            |||||||||||||||| |||||||
Sbjct: 3769 cctcctgggcggcgctggctgccg 3746



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>ref|XM_420295.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC422319),
            mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 56   ctgctcctctccctcctggg 75
            ||||||||||||||||||||
Sbjct: 2211 ctgctcctctccctcctggg 2192



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gctgctcctctccctcctgg 74
               ||||||||||||||||||||
Sbjct: 6577491 gctgctcctctccctcctgg 6577510



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>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene
           oxide synthase (AOS) gene, complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 767 gctgctcctctccctcctgg 786



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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02,
              complete sequence
          Length = 162425

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     gctgctcctctccctcctgg 74
              ||||||||||||||||||||
Sbjct: 120253 gctgctcctctccctcctgg 120272



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>emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chromosome 6 Contains the
             ITPR3 gene for inositol 1,4,5-triphosphate receptor type
             3, a novel gene and the IHPK3 gene for inositol
             hexaphosphate kinase 3, complete sequence
          Length = 134250

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cccttccggctctgcccacc 199
             ||||||||||||||||||||
Sbjct: 14188 cccttccggctctgcccacc 14169



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>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA,
           complete cds
          Length = 1775

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 489 gctgctcctctccctcctgg 508



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gctgctcctctccctcctgg 74
               ||||||||||||||||||||
Sbjct: 6576704 gctgctcctctccctcctgg 6576723



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>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full
           insert sequence
          Length = 1974

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 635 gctgctcctctccctcctgg 654



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>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full
           insert sequence
          Length = 1843

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 55  gctgctcctctccctcctgg 74
           ||||||||||||||||||||
Sbjct: 512 gctgctcctctccctcctgg 531



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gcccaccccggacggcgaaa 212
              ||||||||||||||||||||
Sbjct: 523500 gcccaccccggacggcgaaa 523519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,443,927
Number of Sequences: 3902068
Number of extensions: 2443927
Number of successful extensions: 55359
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55029
Number of HSP's gapped (non-prelim): 330
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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