Clone Name | bart19h12 |
---|---|
Clone Library Name | barley_pub |
>gb|AF349677.1| Cochliobolus carbonum histone deacetylase 2 (HDC2) gene, complete cds Length = 2906 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 ctgctgtgcctgctacaatggc 33 |||||||||||||||||||||| Sbjct: 2460 ctgctgtgcctgctacaatggc 2481
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 gccgtgctgctcctctccctc 70 ||||||||||||||||||||| Sbjct: 999802 gccgtgctgctcctctccctc 999822
>ref|XM_482371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tcgccgtgctgctcctctccc 68 ||||||||||||||||||||| Sbjct: 41 tcgccgtgctgctcctctccc 61
>gb|AY359007.1| Homo sapiens clone DNA57694 KIPV467 (UNQ467) mRNA, complete cds Length = 415 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 gccgtgctgctcctctccctcctgg 74 |||||| |||||||||||||||||| Sbjct: 34 gccgtggtgctcctctccctcctgg 58
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 gctcgccaccctcgccgtgct 57 ||||||||||||||||||||| Sbjct: 3365831 gctcgccaccctcgccgtgct 3365851
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 37 gctcgccaccctcgccgtgctgctc 61 ||||||||||||||||| ||||||| Sbjct: 247473 gctcgccaccctcgccgggctgctc 247449
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 ccggacggcgaaaatatcgtgctga 224 ||||||||||| ||||||||||||| Sbjct: 4844382 ccggacggcgagaatatcgtgctga 4844358
>gb|AD001502.1|CH19F21246 Homo sapiens DNA from chromosome 19-cosmid f21246, genomic sequence Length = 44679 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 gccgtgctgctcctctccctcctgg 74 |||||| |||||||||||||||||| Sbjct: 24550 gccgtggtgctcctctccctcctgg 24526
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tcgccgtgctgctcctctccc 68 ||||||||||||||||||||| Sbjct: 19676173 tcgccgtgctgctcctctccc 19676193
>ref|NM_207392.1| Homo sapiens KIPV467 (UNQ467), mRNA Length = 415 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 gccgtgctgctcctctccctcctgg 74 |||||| |||||||||||||||||| Sbjct: 34 gccgtggtgctcctctccctcctgg 58
>dbj|AP005158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0007M04 Length = 176293 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tcgccgtgctgctcctctccc 68 ||||||||||||||||||||| Sbjct: 5124 tcgccgtgctgctcctctccc 5144
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tcgccgtgctgctcctctccc 68 ||||||||||||||||||||| Sbjct: 151733 tcgccgtgctgctcctctccc 151753
>emb|AJ293408.1|HSA293408 Homo sapiens mRNA differentially expressed in malignant melanoma, clone NN i5 Length = 529 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 gccgtgctgctcctctccctcctgg 74 |||||| |||||||||||||||||| Sbjct: 72 gccgtggtgctcctctccctcctgg 96
>ref|NM_187610.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 372 gctgctcctctccctcctgg 391
>ref|XM_585315.2| PREDICTED: Bos taurus similar to CG3064-PB (LOC508527), mRNA Length = 7413 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cctcctgggcggcgctagctgccg 90 |||||||||||||||| ||||||| Sbjct: 3769 cctcctgggcggcgctggctgccg 3746
>ref|XM_420295.1| PREDICTED: Gallus gallus similar to hypothetical protein (LOC422319), mRNA Length = 2487 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ctgctcctctccctcctggg 75 |||||||||||||||||||| Sbjct: 2211 ctgctcctctccctcctggg 2192
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 6577491 gctgctcctctccctcctgg 6577510
>gb|AY062258.1| Oryza sativa (japonica cultivar-group) dev-stage seedling allene oxide synthase (AOS) gene, complete cds Length = 2465 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 767 gctgctcctctccctcctgg 786
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 120253 gctgctcctctccctcctgg 120272
>emb|AL139044.15| Human DNA sequence from clone RP11-6B20 on chromosome 6 Contains the ITPR3 gene for inositol 1,4,5-triphosphate receptor type 3, a novel gene and the IHPK3 gene for inositol hexaphosphate kinase 3, complete sequence Length = 134250 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cccttccggctctgcccacc 199 |||||||||||||||||||| Sbjct: 14188 cccttccggctctgcccacc 14169
>gb|AY310358.1| Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA, complete cds Length = 1775 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 489 gctgctcctctccctcctgg 508
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 6576704 gctgctcctctccctcctgg 6576723
>dbj|AK066138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052K11, full insert sequence Length = 1974 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 635 gctgctcctctccctcctgg 654
>dbj|AK061758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A10, full insert sequence Length = 1843 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gctgctcctctccctcctgg 74 |||||||||||||||||||| Sbjct: 512 gctgctcctctccctcctgg 531
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcccaccccggacggcgaaa 212 |||||||||||||||||||| Sbjct: 523500 gcccaccccggacggcgaaa 523519 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,443,927 Number of Sequences: 3902068 Number of extensions: 2443927 Number of successful extensions: 55359 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55029 Number of HSP's gapped (non-prelim): 330 length of query: 320 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 298 effective length of database: 17,147,199,772 effective search space: 5109865532056 effective search space used: 5109865532056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)