>GPSN2_HUMAN (Q9NZ01) Synaptic glycoprotein SC2|
          Length = 308

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
 Frame = +1

Query: 175 AKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSLTVVF 354
           A +A+++        ++YPARQ L L  + GKS K   + QK  +         + T+ F
Sbjct: 27  ATIAEIKNLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TATLYF 78

Query: 355 KDLGPQVYYSTLFFWEYVGPLIIYPIFYY-LPVYKYFGYEGERVIHPVQTYAMYYFCFHY 531
           +DLG Q+ + T+F  EY GPL IY +FY+ +P      Y+     H V   A     FHY
Sbjct: 79  RDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHY 138

>GPSN2_RAT (Q64232) Synaptic glycoprotein SC2|
          Length = 308

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
 Frame = +1

Query: 163 LKDSAKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSL 342
           ++  A +++++        ++YPARQ L L  + GKS K   + QK  +         + 
Sbjct: 23  VEPQATISEIKTLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TA 74

Query: 343 TVVFKDLGPQVYYSTLFFWEYVGPLIIYPIFYY-LPVYKYFGYEGERVIHPVQTYAMYYF 519
           T+ F+DLG Q+ + T+F  EY GPL IY +FY+ +P      Y+     H V   A    
Sbjct: 75  TLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCH 134

Query: 520 CFHY 531
            FHY
Sbjct: 135 SFHY 138

>GPSN2_MOUSE (Q9CY27) Synaptic glycoprotein SC2|
          Length = 308

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
 Frame = +1

Query: 163 LKDSAKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSL 342
           ++  A +++++        ++YPARQ L L  + GKS K   + QK  +         + 
Sbjct: 23  VEPQATISEIKTLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TA 74

Query: 343 TVVFKDLGPQVYYSTLFFWEYVGPLIIYPIFYY-LPVYKYFGYEGERVIHPVQTYAMYYF 519
           T+ F+DLG Q+ + T+F  EY GPL IY +FY+ +P      Y+     H V   A    
Sbjct: 75  TLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCH 134

Query: 520 CFHY 531
            FHY
Sbjct: 135 SFHY 138

>CBIO2_HALSA (Q9HPH7) Putative cobalt import ATP-binding protein cbiO 2|
          Length = 242

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 441 VIEDGVDDKRADVFPEEERAVVDLRA*IFEDY 346
           V+EDGV D R D   +   A  DLR+ +F+D+
Sbjct: 205 VLEDGVIDYRGDTLSQSLAAEYDLRSYVFDDW 236

>YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a|
          Length = 867

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
 Frame = +1

Query: 1   PSPPLLFSTPAIGSRGPRL---ASLPQATSGGTP--EEGSMXXXXXXXXXXXXXXXXXXL 165
           PSPPL  +  ++ S GP +   A L   T+  TP    GS                   +
Sbjct: 298 PSPPLTINKNSLSSSGPLIPSTAHLSATTASATPIMANGSTLPPSSETTVGTHCLQQLQI 357

Query: 166 KDSAKVADLQEAIHAKTKKYYPARQRLT--LPAQPGKSGKPVVLNQKASLSEYCEKGSG 336
           + +A  A  Q  I       YPA  +L+  +   P ++   V        +EY   GSG
Sbjct: 358 QSAAAAAITQNQIGPSELNGYPAASQLSSFMHEIPARNTTSVASLLPPGAAEYHLNGSG 416

>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   SPPLLFSTPAIGSRGPRLASLPQATSGGTPEEGSM 108
           SPP    TPA+ +  PR A+LP  +S GT  E  M
Sbjct: 681 SPP----TPALWATSPRAATLPPKSSSGTSCEPKM 711

>YQIY_BACSU (P54536) Probable amino-acid ABC transporter permease protein yqiY|
          Length = 219

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +1

Query: 193 QEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSLTVV-FKDLGP 369
           +EA  A    Y    + L LP Q  K+  P ++N+  +L+    K S  +TV+   D+  
Sbjct: 120 KEAAVALGVPYGKMMKDLLLP-QAFKNISPAIVNELITLT----KESAIVTVIGLGDVMR 174

Query: 370 QVYYSTLFFWEYVGPLIIYPIFYYLPV 450
           + Y +    + Y+ PLII  + YY+ V
Sbjct: 175 RAYQAGAATYNYLEPLIIAGLIYYVLV 201

>CHS6_USTMA (O13395) Chitin synthase 6 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 6) (Class-V chitin
           synthase 6)
          Length = 1103

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 5/27 (18%)
 Frame = +1

Query: 397 WEYVGPLII----YPIF-YYLPVYKYF 462
           W+Y+G L+I    YP+F ++LP+Y ++
Sbjct: 820 WQYIGWLVIYILAYPVFSFFLPIYSFW 846

>PRDM8_MOUSE (Q8BZ97) PR domain zinc finger protein 8 (PR domain-containing|
           protein 8)
          Length = 687

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 30/113 (26%), Positives = 36/113 (31%), Gaps = 8/113 (7%)
 Frame = +1

Query: 22  STPAIGSRG-------PRLA-SLPQATSGGTPEEGSMXXXXXXXXXXXXXXXXXXLKDSA 177
           STPA GS G       PR   SLP    GG+P  GS                      S 
Sbjct: 427 STPAAGSPGAPEKLLAPRPGGSLPGRLEGGSPARGSAFTSVSQLGGGGGAGTAGTAGGSG 486

Query: 178 KVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSG 336
                      +T      +   + PA+      P+VL QK    E C  G G
Sbjct: 487 G---------GQTAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPGDG 530


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,325,436
Number of Sequences: 219361
Number of extensions: 1255724
Number of successful extensions: 3594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3591
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)