Clone Name | bart19h06 |
---|---|
Clone Library Name | barley_pub |
>FAD3C_SOYBN (P48621) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 453 Score = 87.8 bits (216), Expect = 2e-17 Identities = 48/111 (43%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Frame = +2 Query: 236 RDWALRVSAPTRLASVLEEDKRGLXXXXXXXXXXXXXXXXXXXX---XXXXEIRAAIPKH 406 R+W L+VSAP R+AS+ EE K +IRAAIPKH Sbjct: 57 RNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPEFDPGAPPPFNLADIRAAIPKH 116 Query: 407 CWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 CWVKDPWRSMSY PLYWAAQGTMFWALF Sbjct: 117 CWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALF 167
>FAD3C_SESIN (P48620) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 79.0 bits (193), Expect = 9e-15 Identities = 43/108 (39%), Positives = 49/108 (45%) Frame = +2 Query: 236 RDWALRVSAPTRLASVLEEDKRGLXXXXXXXXXXXXXXXXXXXXXXXXEIRAAIPKHCWV 415 ++WALRVSAP R+ V EE++ +IR AIPKHCWV Sbjct: 58 KNWALRVSAPLRVLQVEEEEEN--KEGERVINGGEEFDPGAPPPFKLSDIREAIPKHCWV 115 Query: 416 KDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 KDPWRSM Y PLYW AQ TMFWALF Sbjct: 116 KDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALF 163
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 75.9 bits (185), Expect = 7e-14 Identities = 41/111 (36%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Frame = +2 Query: 239 DWALRVSAPTRLASVLEEDKRGLXXXXXXXXXXXXXXXXXXXXX----XXXEIRAAIPKH 406 +WAL V+ P +++V ED R +IRAAIPKH Sbjct: 63 NWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEFFDAGAPPPFTLADIRAAIPKH 122 Query: 407 CWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 CWVK+PWRSMSY PLYW QGTMFWALF Sbjct: 123 CWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALF 173
>FAD3D_ARATH (P48622) Temperature-sensitive omega-3 fatty acid desaturase,| chloroplast precursor (EC 1.14.19.-) Length = 435 Score = 73.9 bits (180), Expect = 3e-13 Identities = 44/109 (40%), Positives = 48/109 (44%), Gaps = 1/109 (0%) Frame = +2 Query: 236 RDWALRVSAP-TRLASVLEEDKRGLXXXXXXXXXXXXXXXXXXXXXXXXEIRAAIPKHCW 412 R+WAL V+ P T L S EED +IRAAIPKHCW Sbjct: 57 RNWALNVATPLTTLQSPSEEDTERFDPGAPPPFNLA-------------DIRAAIPKHCW 103 Query: 413 VKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 VK+PW SMSY PLYW AQGTMFWALF Sbjct: 104 VKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALF 152
>FAD3C_ARATH (P46310) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 446 Score = 73.9 bits (180), Expect = 3e-13 Identities = 43/112 (38%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Frame = +2 Query: 236 RDWALRVSAPTRLA----SVLEEDKRGLXXXXXXXXXXXXXXXXXXXXXXXXEIRAAIPK 403 R+WAL VS P S LEED + +IRAAIPK Sbjct: 60 RNWALNVSTPLTTPIFEESPLEEDNK------------QRFDPGAPPPFNLADIRAAIPK 107 Query: 404 HCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 HCWVK+PW+S+SY PLYW AQGTMFWALF Sbjct: 108 HCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALF 159
>FAD3C_BRANA (P48618) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) (Fragment) Length = 404 Score = 72.8 bits (177), Expect = 6e-13 Identities = 32/60 (53%), Positives = 35/60 (58%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 +IRAAIPKHCWVK+PW+SMSY PLYW AQGTMFWALF Sbjct: 58 DIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALF 117
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 68.9 bits (167), Expect = 9e-12 Identities = 31/60 (51%), Positives = 34/60 (56%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 +IRAAIPKHCWVK P RSMSY PLYWAAQGT+FWA+F Sbjct: 38 DIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIF 97
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 67.8 bits (164), Expect = 2e-11 Identities = 30/60 (50%), Positives = 33/60 (55%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 +IRAAIPKHCWVK P RSMSY PLYW AQGT+FWA+F Sbjct: 35 DIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIF 94
>FAD3E_TOBAC (P48626) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 379 Score = 65.9 bits (159), Expect = 8e-11 Identities = 30/60 (50%), Positives = 32/60 (53%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 EIR IPKHCWVKDP RS+SY PLYWA QGTMFWA+F Sbjct: 34 EIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAIHLDSWLFYPLYWAIQGTMFWAIF 93
>FAD3E_PHAAU (P32291) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Indole-3-acetic acid-induced protein ARG1) Length = 380 Score = 62.8 bits (151), Expect = 6e-10 Identities = 29/60 (48%), Positives = 31/60 (51%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 +IRAAIPKHCW K RS+SY PLYW AQGTMFWALF Sbjct: 34 DIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALF 93
>FAD3E_SOYBN (P48625) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 380 Score = 60.8 bits (146), Expect = 2e-09 Identities = 28/60 (46%), Positives = 32/60 (53%) Frame = +2 Query: 380 EIRAAIPKHCWVKDPWRSMSYXXXXXXXXXXXXXXXXXXXXXXXXPLYWAAQGTMFWALF 559 EIRA+IPKHCWVK+PWRS+SY +Y QGTMFWALF Sbjct: 37 EIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALF 96
>HSP71_YEAST (P10591) Heat shock protein SSA1 (Heat shock protein YG100)| Length = 641 Score = 30.4 bits (67), Expect = 3.6 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 349 PGGAAAVRPGGDPRGHPEALLGQGP 423 PGGAA PGG P G P A +GP Sbjct: 611 PGGAAGGAPGGFPGGAPPAPEAEGP 635 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,109,944 Number of Sequences: 219361 Number of extensions: 718659 Number of successful extensions: 2982 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2967 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)