ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart19g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473024.1| Oryza sativa (japonica cultivar-group), predic... 137 5e-29
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
3emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 98 4e-17
4emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4,... 98 4e-17
5ref|NM_190259.1| Oryza sativa (japonica cultivar-group), predic... 60 9e-06
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
7dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
8dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic D... 60 9e-06
9dbj|AK073544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 9e-06
10ref|NM_190243.1| Oryza sativa (japonica cultivar-group), predic... 48 0.033
11ref|NM_190256.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
12dbj|AK063282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
13gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 2.0
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
16emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 42 2.0
17gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 2.0
18ref|XM_469925.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.1
19gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
20gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, co... 40 8.1
21gb|AC167234.4| Mus musculus 10 BAC RP23-158E3 (Roswell Park Canc... 40 8.1
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.1
23gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome... 40 8.1
24gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, comple... 40 8.1
25gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 40 8.1
26emb|X91997.1|GGLIVBRN3 G.gallus brn-3 gene (tissue type, liver) 40 8.1
27emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 8.1
28emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on ch... 40 8.1
29emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 i... 40 8.1
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
32gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Can... 40 8.1
33gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Can... 40 8.1
34gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinosta... 40 8.1
35gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, comple... 40 8.1
36gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 geno... 40 8.1
37dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.1
38emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.1
39dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal ... 40 8.1
40gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.1
41gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c... 40 8.1
42gb|U55214.1|TPU55214 Treponema pallidum RuvB' gene, partial cds,... 40 8.1
43gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription re... 40 8.1
44emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 8.1
45dbj|AB017350.1| Acidiphilium rubrum bchP, bchI, bchD, crtI genes... 40 8.1 
>ref|XM_473024.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1146

 Score =  137 bits (69), Expect = 5e-29
 Identities = 174/209 (83%)
 Strand = Plus / Plus

                                                                       
Query: 387 ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 446
           |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 148 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 207

                                                                       
Query: 447 atcctcaggtacaagaacacggggacgagccaatggagcttcgtgctgtcggcgccggac 506
            ||||  ||||||||||||| ||   |||||||||||||||| | || ||||||||||||
Sbjct: 208 gtcctgcggtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggac 267

                                                                       
Query: 507 aagaggtcctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgcc 566
           ||| | || |||||||| || |||||||| |||||||||   |||||||| |||||||||
Sbjct: 268 aagggctcgtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgcc 327

                                        
Query: 567 atgctcggctggtcgtcgggcggcaaggg 595
            |  |||  |||||||||||||| |||||
Sbjct: 328 gtcgtcgcgtggtcgtcgggcgggaaggg 356
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                            
Query: 455      gtacaagaacacggggacgagccaatggagcttcgtgctgtcggcgccggacaagaggtc 514
                |||||||||||| ||   |||||||||||||||| | || ||||||||||||||| | ||
Sbjct: 24742414 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 24742473

                                                                            
Query: 515      ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 574
                 |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 24742474 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 24742533

                                     
Query: 575      ctggtcgtcgggcggcaaggg 595
                 |||||||||||||| |||||
Sbjct: 24742534 gtggtcgtcgggcgggaaggg 24742554



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 97       cttggccacttcctcccttccaagcaccgccaatcttgtccga 139
                |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 24741571 cttggccatttcttaccttccaagcaccaccaatcttgtccga 24741613



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 387      ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 446
                |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 24741902 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 24741961

                     
Query: 447      atcct 451
                 ||||
Sbjct: 24741962 gtcct 24741966



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 39       agcatcctctgacctgccaaac 60
                ||||||||||||||||||||||
Sbjct: 24741528 agcatcctctgacctgccaaac 24741549
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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                          
Query: 455    gtacaagaacacggggacgagccaatggagcttcgtgctgtcggcgccggacaagaggtc 514
              |||||||||||| ||   |||||||||||||||| | || ||||||||||||||| | ||
Sbjct: 131937 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 131996

                                                                          
Query: 515    ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 574
               |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 131997 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 132056

                                   
Query: 575    ctggtcgtcgggcggcaaggg 595
               |||||||||||||| |||||
Sbjct: 132057 gtggtcgtcgggcgggaaggg 132077



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                         
Query: 97     cttggccacttcctcccttccaagcaccgccaatcttgtccga 139
              |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 131094 cttggccatttcttaccttccaagcaccaccaatcttgtccga 131136



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 387    ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 446
              |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 131425 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 131484

                   
Query: 447    atcct 451
               ||||
Sbjct: 131485 gtcct 131489



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 39     agcatcctctgacctgccaaac 60
              ||||||||||||||||||||||
Sbjct: 131051 agcatcctctgacctgccaaac 131072
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>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
            complete sequence
          Length = 170765

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                        
Query: 455  gtacaagaacacggggacgagccaatggagcttcgtgctgtcggcgccggacaagaggtc 514
            |||||||||||| ||   |||||||||||||||| | || ||||||||||||||| | ||
Sbjct: 4130 gtacaagaacaccggagagagccaatggagcttcatcctctcggcgccggacaagggctc 4189

                                                                        
Query: 515  ctacgtggccgtcgggttctcgggcaaggggggcatggtcggcagcagcgccatgctcgg 574
             |||||||| || |||||||| |||||||||   |||||||| ||||||||| |  ||| 
Sbjct: 4190 gtacgtggcggtggggttctccggcaaggggctgatggtcggtagcagcgccgtcgtcgc 4249

                                 
Query: 575  ctggtcgtcgggcggcaaggg 595
             |||||||||||||| |||||
Sbjct: 4250 gtggtcgtcgggcgggaaggg 4270



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 97   cttggccacttcctcccttccaagcaccgccaatcttgtccga 139
            |||||||| ||| | ||||||||||||| ||||||||||||||
Sbjct: 3287 cttggccatttcttaccttccaagcaccaccaatcttgtccga 3329



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 387  ctcgtccccttcgactccgacgccttccactgcatcaccctctggaaggacgaggacttc 446
            |||||||||||| |||||  |||||||| |||| | ||| |||||||| | |||||||||
Sbjct: 3618 ctcgtccccttcaactcctccgccttccgctgcctgaccgtctggaagcaggaggacttc 3677

                 
Query: 447  atcct 451
             ||||
Sbjct: 3678 gtcct 3682



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 39   agcatcctctgacctgccaaac 60
            ||||||||||||||||||||||
Sbjct: 3244 agcatcctctgacctgccaaac 3265
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>ref|NM_190259.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2058

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 480 tggagcttcgtgctgtcggcgccggacaag 509
           ||||||||||||||||||||||||||||||
Sbjct: 367 tggagcttcgtgctgtcggcgccggacaag 396
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                              
Query: 480      tggagcttcgtgctgtcggcgccggacaag 509
                ||||||||||||||||||||||||||||||
Sbjct: 38918523 tggagcttcgtgctgtcggcgccggacaag 38918552



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 480      tggagcttcgtgctgtcggcgccggaca 507
                |||| |||||||||||||||||||||||
Sbjct: 38847226 tggaacttcgtgctgtcggcgccggaca 38847199



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 480      tggagcttcgtgctgtcggcgccggac 506
                |||| ||||||||||||||||||||||
Sbjct: 38909746 tggaacttcgtgctgtcggcgccggac 38909772
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                            
Query: 480    tggagcttcgtgctgtcggcgccggacaag 509
              ||||||||||||||||||||||||||||||
Sbjct: 191405 tggagcttcgtgctgtcggcgccggacaag 191434



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 480    tggagcttcgtgctgtcggcgccggaca 507
              |||| |||||||||||||||||||||||
Sbjct: 120108 tggaacttcgtgctgtcggcgccggaca 120081



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 480    tggagcttcgtgctgtcggcgccggac 506
              |||| ||||||||||||||||||||||
Sbjct: 182628 tggaacttcgtgctgtcggcgccggac 182654
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>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0696G06
          Length = 142571

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 480   tggagcttcgtgctgtcggcgccggacaag 509
             ||||||||||||||||||||||||||||||
Sbjct: 83309 tggagcttcgtgctgtcggcgccggacaag 83338



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 480   tggagcttcgtgctgtcggcgccggaca 507
             |||| |||||||||||||||||||||||
Sbjct: 12012 tggaacttcgtgctgtcggcgccggaca 11985



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 480   tggagcttcgtgctgtcggcgccggac 506
             |||| ||||||||||||||||||||||
Sbjct: 74532 tggaacttcgtgctgtcggcgccggac 74558
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>dbj|AK073544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041H18, full
           insert sequence
          Length = 1322

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 480 tggagcttcgtgctgtcggcgccggacaag 509
           ||||||||||||||||||||||||||||||
Sbjct: 209 tggagcttcgtgctgtcggcgccggacaag 238
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>ref|NM_190243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1680

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 480 tggagcttcgtgctgtcggcgccggaca 507
           |||| |||||||||||||||||||||||
Sbjct: 292 tggaacttcgtgctgtcggcgccggaca 319
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>ref|NM_190256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 480 tggagcttcgtgctgtcggcgccggac 506
           |||| ||||||||||||||||||||||
Sbjct: 250 tggaacttcgtgctgtcggcgccggac 276
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>dbj|AK063282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D02, full
           insert sequence
          Length = 1660

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 480 tggagcttcgtgctgtcggcgccggac 506
           |||| ||||||||||||||||||||||
Sbjct: 303 tggaacttcgtgctgtcggcgccggac 329
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 549     atggtcggcagcagcgccatgctcg 573
               ||||||||||||||||||| |||||
Sbjct: 2128896 atggtcggcagcagcgccaggctcg 2128872
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 446      catcctcaggtacaagaacac 466
                |||||||||||||||||||||
Sbjct: 24383924 catcctcaggtacaagaacac 24383904
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 446      catcctcaggtacaagaacac 466
                |||||||||||||||||||||
Sbjct: 24312130 catcctcaggtacaagaacac 24312110
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   catcctcaggtacaagaacac 466
             |||||||||||||||||||||
Sbjct: 47456 catcctcaggtacaagaacac 47436
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 546     ggcatggtcggcagcagcgcc 566
               |||||||||||||||||||||
Sbjct: 6299644 ggcatggtcggcagcagcgcc 6299664
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>ref|XM_469925.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 ccgacgccttccactgcatc 422
           ||||||||||||||||||||
Sbjct: 658 ccgacgccttccactgcatc 639
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>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
             complete sequence
          Length = 125650

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   ccgacgccttccactgcatc 422
             ||||||||||||||||||||
Sbjct: 51505 ccgacgccttccactgcatc 51486
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>gb|AC114984.18| Mus musculus chromosome 18, clone RP23-248F9, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    cagcaagcatcctctgacct 53
             ||||||||||||||||||||
Sbjct: 96050 cagcaagcatcctctgacct 96069
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>gb|AC167234.4| Mus musculus 10 BAC RP23-158E3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184159

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ccaagaaagacacacaacac 184
              ||||||||||||||||||||
Sbjct: 163794 ccaagaaagacacacaacac 163813
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 403      ccgacgccttccactgcatc 422
                ||||||||||||||||||||
Sbjct: 32524061 ccgacgccttccactgcatc 32524042
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>gb|AC132357.3| Mus musculus BAC clone RP24-120G2 from chromosome 18, complete sequence
          Length = 189088

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    cagcaagcatcctctgacct 53
             ||||||||||||||||||||
Sbjct: 64276 cagcaagcatcctctgacct 64257
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>gb|AC124176.3| Mus musculus BAC clone RP23-184D18 from 7, complete sequence
          Length = 180922

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    aaacccaagaaagacacaca 180
              ||||||||||||||||||||
Sbjct: 148120 aaacccaagaaagacacaca 148139
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>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    cagcaagcatcctctgacct 53
             ||||||||||||||||||||
Sbjct: 32718 cagcaagcatcctctgacct 32699
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>emb|X91997.1|GGLIVBRN3 G.gallus brn-3 gene (tissue type, liver)
          Length = 2175

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 ccaaacccaagaaagacaca 178
           ||||||||||||||||||||
Sbjct: 924 ccaaacccaagaaagacaca 905
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    gagcttcgtgctgtcggcgc 501
              ||||||||||||||||||||
Sbjct: 384926 gagcttcgtgctgtcggcgc 384945
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>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the
             3' end of a variant of the gene for a novel protein
             similar to human sperm antigen HCMOGT-1 (B230396K10Rik),
             the Adora2b gene for adenosine A2b receptor, the gene for
             a novel protein (2410012H22Rik), a somatic cytochrome c
             (Cycs) pseudogene, a novel gene, a novel pseudogene, the
             gene for a novel protein (2810460C24Rik), the 3' end of
             the Ncor1 gene for nuclear receptor co-repressor 1 and two
             CpG islands, complete sequence
          Length = 214834

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   agacacacaacacaacatag 191
             ||||||||||||||||||||
Sbjct: 97430 agacacacaacacaacatag 97411
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>emb|CR847883.10| Zebrafish DNA sequence from clone DKEYP-24H10 in linkage group 1,
             complete sequence
          Length = 83811

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   agaaagacacacaacacaac 187
             ||||||||||||||||||||
Sbjct: 63503 agaaagacacacaacacaac 63484
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 403      ccgacgccttccactgcatc 422
                ||||||||||||||||||||
Sbjct: 20629465 ccgacgccttccactgcatc 20629446
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 403      ccgacgccttccactgcatc 422
                ||||||||||||||||||||
Sbjct: 32614571 ccgacgccttccactgcatc 32614552
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>gb|AC157018.6| Mus musculus 10 BAC RP24-414A19 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 146007

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ccaagaaagacacacaacac 184
             ||||||||||||||||||||
Sbjct: 47348 ccaagaaagacacacaacac 47367
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>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161127

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ggggcagcaagcatcctctg 49
             ||||||||||||||||||||
Sbjct: 55377 ggggcagcaagcatcctctg 55396
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>gb|AY117439.1| Streptomyces carzinostaticus subsp. neocarzinostaticus neocarzinostatin
             biosynthetic locus, complete sequence
          Length = 92294

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   cgactccgacgccttccact 417
             ||||||||||||||||||||
Sbjct: 77610 cgactccgacgccttccact 77629
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>gb|AC106870.4| Homo sapiens BAC clone RP11-223F18 from 2, complete sequence
          Length = 143441

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   ccaaacccaagaaagacaca 178
             ||||||||||||||||||||
Sbjct: 23511 ccaaacccaagaaagacaca 23492
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>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete
             sequence
          Length = 119134

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   ccgacgccttccactgcatc 422
             ||||||||||||||||||||
Sbjct: 57510 ccgacgccttccactgcatc 57491
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>dbj|AK106967.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F12, full
           insert sequence
          Length = 2196

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 ccgacgccttccactgcatc 422
           ||||||||||||||||||||
Sbjct: 561 ccgacgccttccactgcatc 580
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 488     cgtgctgtcggcgccggaca 507
               ||||||||||||||||||||
Sbjct: 1076748 cgtgctgtcggcgccggaca 1076729
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>dbj|AB099074.1| Bos taurus mRNA for similar to acidic ribosomal phosphoprotein PO,
           partial cds, clone: ORCS13610
          Length = 577

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  agggcagcagcggggcagca 38
           ||||||||||||||||||||
Sbjct: 442 agggcagcagcggggcagca 423
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 493     tgtcggcgccggacaagagg 512
               ||||||||||||||||||||
Sbjct: 2540025 tgtcggcgccggacaagagg 2540044
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>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome
          Length = 1138011

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 159    ccaaacccaagaaagacacacaacacaa 186
              |||||||||||||| |||| ||||||||
Sbjct: 186785 ccaaacccaagaaaaacacccaacacaa 186758
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>gb|U55214.1|TPU55214 Treponema pallidum RuvB' gene, partial cds, and TroA, TroB, TroC,
            TroD, TroR, Pgm, Pfs, and Tpp15 genes, complete cds
          Length = 7536

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 159  ccaaacccaagaaagacacacaacacaa 186
            |||||||||||||| |||| ||||||||
Sbjct: 2598 ccaaacccaagaaaaacacccaacacaa 2571
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>gb|U59153.1|SAU59153 Streptomyces albus G hsp18 transcription regulator gene, complete
           cds
          Length = 1020

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 cctccccgtcgcccgcctcg 390
           ||||||||||||||||||||
Sbjct: 688 cctccccgtcgcccgcctcg 707
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>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
             sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 170   aaagacacacaacacaacatagga 193
             |||||||||||||| |||||||||
Sbjct: 67230 aaagacacacaacaaaacatagga 67253
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>dbj|AB017350.1| Acidiphilium rubrum bchP, bchI, bchD, crtI genes and 2 ORFs,
           partial and complete cds
          Length = 4965

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 547 gcatggtcggcagcagcgcc 566
           ||||||||||||||||||||
Sbjct: 827 gcatggtcggcagcagcgcc 808


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,187,870
Number of Sequences: 3902068
Number of extensions: 3187870
Number of successful extensions: 62058
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61539
Number of HSP's gapped (non-prelim): 519
length of query: 595
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 572
effective length of database: 17,143,297,704
effective search space: 9805966286688
effective search space used: 9805966286688
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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