ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009310.1| Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence Length = 1470 Score = 523 bits (264), Expect = e-145 Identities = 352/379 (92%), Gaps = 3/379 (0%) Strand = Plus / Plus Query: 65 agctaagcatcttcttgagttctccgtggt--ga-tcggatggacagcgcgtggagctgt 121 |||||||||||||||||| ||||| ||| | || ||||||||||||||| | ||||| Sbjct: 47 agctaagcatcttcttgatttctcggtgatcggattcggatggacagcgcaagaagctgc 106 Query: 122 ctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtcgccggcc 181 |||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||| Sbjct: 107 ctcgtggacgacgtgagcagcggcgcgtccacgggcaagaaggcctctccgtccccggcc 166 Query: 182 gcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcg 241 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 167 gcgccggcgaccaagccgctgcagcgcgtgggcagcggggccagcgcggtcatggacgcg 226 Query: 242 cccgagcccggcgcggaggcggactccggccgcggcgggcggctgccgtcgtccaagtac 301 || ||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct: 227 ccggagcccggcgccgaggcggactccggccgcgtcggcaggctgccgtcctccaagtac 286 Query: 302 aagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgccaccag 361 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 287 aagggcgtggtgccgcagcccaacgggcgctggggcgcgcagatctacgagcgccaccag 346 Query: 362 cgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgcggcg 421 ||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||| Sbjct: 347 cgcgtctggctcggcaccttcacgggggaggccgaggctgcgcgcgcctacgacgcggcg 406 Query: 422 gcgcagcgcttccgcggcc 440 ||||||||||||||||||| Sbjct: 407 gcgcagcgcttccgcggcc 425
>ref|XM_475850.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1185 Score = 224 bits (113), Expect = 2e-55 Identities = 158/173 (91%) Strand = Plus / Plus Query: 268 cggccgcggcgggcggctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgg 327 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 174 cggcggcggcgggaagctgccgtcgtccaagtacaagggcgtggtgccgcaaccgaacgg 233 Query: 328 gcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcacgttcacggg 387 |||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| || Sbjct: 234 gcggtggggcgcgcagatatacgagcggcaccagcgggtgtggctcggcacgttcaccgg 293 Query: 388 cgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct: 294 cgaggcggaggcggcgcgcgcctacgacgtggcggcgcagcggttccgcggcc 346 Score = 113 bits (57), Expect = 5e-22 Identities = 128/153 (83%), Gaps = 9/153 (5%) Strand = Plus / Plus Query: 115 gagctgtctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtc 174 |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| Sbjct: 12 gagctgtctcttggacgacgcgagcagcggcgcgtccacgggcaagaaggc--------- 62 Query: 175 gccggccgcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcat 234 | |||| ||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| || Sbjct: 63 ggcggcggcggcggcgtcgaaggcgctgcagcgcgtgggcagcggcgccagcgcggtgat 122 Query: 235 ggacgcgcccgagcccggcgcggaggcggactc 267 ||||||| ||||||| ||||| ||||||||||| Sbjct: 123 ggacgcggccgagcctggcgccgaggcggactc 155
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 224 bits (113), Expect = 2e-55 Identities = 158/173 (91%) Strand = Plus / Plus Query: 268 cggccgcggcgggcggctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgg 327 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 14230 cggcggcggcgggaagctgccgtcgtccaagtacaagggcgtggtgccgcaaccgaacgg 14289 Query: 328 gcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcacgttcacggg 387 |||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| || Sbjct: 14290 gcggtggggcgcgcagatatacgagcggcaccagcgggtgtggctcggcacgttcaccgg 14349 Query: 388 cgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct: 14350 cgaggcggaggcggcgcgcgcctacgacgtggcggcgcagcggttccgcggcc 14402 Score = 113 bits (57), Expect = 5e-22 Identities = 128/153 (83%), Gaps = 9/153 (5%) Strand = Plus / Plus Query: 115 gagctgtctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtc 174 |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| Sbjct: 14068 gagctgtctcttggacgacgcgagcagcggcgcgtccacgggcaagaaggc--------- 14118 Query: 175 gccggccgcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcat 234 | |||| ||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| || Sbjct: 14119 ggcggcggcggcggcgtcgaaggcgctgcagcgcgtgggcagcggcgccagcgcggtgat 14178 Query: 235 ggacgcgcccgagcccggcgcggaggcggactc 267 ||||||| ||||||| ||||| ||||||||||| Sbjct: 14179 ggacgcggccgagcctggcgccgaggcggactc 14211
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 224 bits (113), Expect = 2e-55 Identities = 158/173 (91%) Strand = Plus / Plus Query: 268 cggccgcggcgggcggctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgg 327 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 89415 cggcggcggcgggaagctgccgtcgtccaagtacaagggcgtggtgccgcaaccgaacgg 89474 Query: 328 gcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcacgttcacggg 387 |||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| || Sbjct: 89475 gcggtggggcgcgcagatatacgagcggcaccagcgggtgtggctcggcacgttcaccgg 89534 Query: 388 cgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct: 89535 cgaggcggaggcggcgcgcgcctacgacgtggcggcgcagcggttccgcggcc 89587 Score = 113 bits (57), Expect = 5e-22 Identities = 128/153 (83%), Gaps = 9/153 (5%) Strand = Plus / Plus Query: 115 gagctgtctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtc 174 |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| Sbjct: 89253 gagctgtctcttggacgacgcgagcagcggcgcgtccacgggcaagaaggc--------- 89303 Query: 175 gccggccgcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcat 234 | |||| ||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| || Sbjct: 89304 ggcggcggcggcggcgtcgaaggcgctgcagcgcgtgggcagcggcgccagcgcggtgat 89363 Query: 235 ggacgcgcccgagcccggcgcggaggcggactc 267 ||||||| ||||||| ||||| ||||||||||| Sbjct: 89364 ggacgcggccgagcctggcgccgaggcggactc 89396
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 224 bits (113), Expect = 2e-55 Identities = 158/173 (91%) Strand = Plus / Plus Query: 268 cggccgcggcgggcggctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgg 327 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 113918 cggcggcggcgggaagctgccgtcgtccaagtacaagggcgtggtgccgcaaccgaacgg 113977 Query: 328 gcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcacgttcacggg 387 |||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| || Sbjct: 113978 gcggtggggcgcgcagatatacgagcggcaccagcgggtgtggctcggcacgttcaccgg 114037 Query: 388 cgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct: 114038 cgaggcggaggcggcgcgcgcctacgacgtggcggcgcagcggttccgcggcc 114090 Score = 113 bits (57), Expect = 5e-22 Identities = 128/153 (83%), Gaps = 9/153 (5%) Strand = Plus / Plus Query: 115 gagctgtctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtc 174 |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| Sbjct: 113756 gagctgtctcttggacgacgcgagcagcggcgcgtccacgggcaagaaggc--------- 113806 Query: 175 gccggccgcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcat 234 | |||| ||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| || Sbjct: 113807 ggcggcggcggcggcgtcgaaggcgctgcagcgcgtgggcagcggcgccagcgcggtgat 113866 Query: 235 ggacgcgcccgagcccggcgcggaggcggactc 267 ||||||| ||||||| ||||| ||||||||||| Sbjct: 113867 ggacgcggccgagcctggcgccgaggcggactc 113899
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 224 bits (113), Expect = 2e-55 Identities = 158/173 (91%) Strand = Plus / Plus Query: 268 cggccgcggcgggcggctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgg 327 |||| |||||||| |||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 27082834 cggcggcggcgggaagctgccgtcgtccaagtacaagggcgtggtgccgcaaccgaacgg 27082893 Query: 328 gcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcacgttcacggg 387 |||||||||||||||||| |||||||| |||||||| || ||||||||||||||||| || Sbjct: 27082894 gcggtggggcgcgcagatatacgagcggcaccagcgggtgtggctcggcacgttcaccgg 27082953 Query: 388 cgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 |||||| ||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct: 27082954 cgaggcggaggcggcgcgcgcctacgacgtggcggcgcagcggttccgcggcc 27083006 Score = 113 bits (57), Expect = 5e-22 Identities = 128/153 (83%), Gaps = 9/153 (5%) Strand = Plus / Plus Query: 115 gagctgtctcgtggacgacgtgagcagcggcacgtccacggtcaagaaggcgtctccgtc 174 |||||||||| ||||||||| |||||||||| ||||||||| ||||||||| Sbjct: 27082672 gagctgtctcttggacgacgcgagcagcggcgcgtccacgggcaagaaggc--------- 27082722 Query: 175 gccggccgcgccggcgaccaagccgctgcagcgcgtcggcagcggggccagcgcggtcat 234 | |||| ||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| || Sbjct: 27082723 ggcggcggcggcggcgtcgaaggcgctgcagcgcgtgggcagcggcgccagcgcggtgat 27082782 Query: 235 ggacgcgcccgagcccggcgcggaggcggactc 267 ||||||| ||||||| ||||| ||||||||||| Sbjct: 27082783 ggacgcggccgagcctggcgccgaggcggactc 27082815 Score = 42.1 bits (21), Expect = 1.5 Identities = 67/81 (82%), Gaps = 6/81 (7%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc---acgggcgaggccgaggcgggccgcgcctacgacgcg 418 ||||||||||||||||| ||| || | |||||||| |||| ||||||||||||| | Sbjct: 21264250 cgcgtctggctcggcaccttcgagaccgccgaggccgcggcg---cgcgcctacgacgag 21264306 Query: 419 gcggcgcagcgcttccgcggc 439 || |||| |||||||||||| Sbjct: 21264307 gccgcgctccgcttccgcggc 21264327
>ref|NM_192160.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 283 gctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgca 342 ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 228 gctgccgtcgtccaagttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgca 287 Query: 343 gatctacgagcgccaccagcgcgtctggctcggcacgttcacgggcgaggccgaggcggg 402 |||||||||||| |||||||| || ||||||||||||||| | || |||| ||| || | Sbjct: 288 gatctacgagcggcaccagcgggtgtggctcggcacgttcgccggggaggacgacgccgc 347 Query: 403 ccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 ||||||||||||| || ||||||||||||||||||| Sbjct: 348 gcgcgcctacgacgtcgccgcgcagcgcttccgcggcc 385 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 196 gccgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcgcccgagcccggcgc 255 ||||||| ||||| | || |||||||| |||||||| |||||||| ||||||| ||||| Sbjct: 96 gccgctggagcgcatggggagcggggcgagcgcggtggtggacgcggccgagcctggcgc 155 Query: 256 ggaggcggactccgg 270 ||||||||||||||| Sbjct: 156 ggaggcggactccgg 170
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 283 gctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgca 342 ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 28614013 gctgccgtcgtccaagttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgca 28613954 Query: 343 gatctacgagcgccaccagcgcgtctggctcggcacgttcacgggcgaggccgaggcggg 402 |||||||||||| |||||||| || ||||||||||||||| | || |||| ||| || | Sbjct: 28613953 gatctacgagcggcaccagcgggtgtggctcggcacgttcgccggggaggacgacgccgc 28613894 Query: 403 ccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 ||||||||||||| || ||||||||||||||||||| Sbjct: 28613893 gcgcgcctacgacgtcgccgcgcagcgcttccgcggcc 28613856 Score = 115 bits (58), Expect = 1e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 2153523 gtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcggca 2153582 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| ||||||||||||| Sbjct: 2153583 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgacgt 2153642 Query: 418 ggcggcgcagcgcttccg 435 |||||||| |||||||| Sbjct: 2153643 ggcggcgctccgcttccg 2153660 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct: 2201607 gtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcggca 2201666 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| || |||||||||| Sbjct: 2201667 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgacgt 2201726 Query: 418 ggcggcgc 425 |||||||| Sbjct: 2201727 ggcggcgc 2201734 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 196 gccgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcgcccgagcccggcgc 255 ||||||| ||||| | || |||||||| |||||||| |||||||| ||||||| ||||| Sbjct: 28614145 gccgctggagcgcatggggagcggggcgagcgcggtggtggacgcggccgagcctggcgc 28614086 Query: 256 ggaggcggactccgg 270 ||||||||||||||| Sbjct: 28614085 ggaggcggactccgg 28614071 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcggg 402 |||| |||||||||||||| || || |||||||||||||| Sbjct: 3900117 gcgtgtggctcggcacgtttaccggtgaggccgaggcggg 3900156 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccgtcgccggccgcgccggc 189 |||||||||||||||||||| Sbjct: 10878707 ccgtcgccggccgcgccggc 10878726
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 283 gctgccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgca 342 ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 140452 gctgccgtcgtccaagttcaagggcgtcgtgccgcagcccaacgggaggtggggcgcgca 140393 Query: 343 gatctacgagcgccaccagcgcgtctggctcggcacgttcacgggcgaggccgaggcggg 402 |||||||||||| |||||||| || ||||||||||||||| | || |||| ||| || | Sbjct: 140392 gatctacgagcggcaccagcgggtgtggctcggcacgttcgccggggaggacgacgccgc 140333 Query: 403 ccgcgcctacgacgcggcggcgcagcgcttccgcggcc 440 ||||||||||||| || ||||||||||||||||||| Sbjct: 140332 gcgcgcctacgacgtcgccgcgcagcgcttccgcggcc 140295 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 196 gccgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcgcccgagcccggcgc 255 ||||||| ||||| | || |||||||| |||||||| |||||||| ||||||| ||||| Sbjct: 140584 gccgctggagcgcatggggagcggggcgagcgcggtggtggacgcggccgagcctggcgc 140525 Query: 256 ggaggcggactccgg 270 ||||||||||||||| Sbjct: 140524 ggaggcggactccgg 140510
>gb|BT017462.1| Zea mays clone EL01N0407E07.c mRNA sequence Length = 1115 Score = 170 bits (86), Expect = 2e-39 Identities = 113/122 (92%) Strand = Plus / Plus Query: 319 gcccaacgggcggtggggcgcgcagatctacgagcgccaccagcgcgtctggctcggcac 378 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 9 gcccaacgggcggtggggcgcgcagatctacgagcgccaccagcgcgtgtggctcggcac 68 Query: 379 gttcacgggcgaggccgaggcgggccgcgcctacgacgcggcggcgcagcgcttccgcgg 438 ||| ||||||||||||| |||| ||||||||||||| ||||||||||| |||||||| Sbjct: 69 cttcgcgggcgaggccgacgcggcgcgcgcctacgacgtcgcggcgcagcggttccgcgg 128 Query: 439 cc 440 || Sbjct: 129 cc 130
>ref|NM_184298.1| Oryza sativa (japonica cultivar-group), mRNA Length = 954 Score = 115 bits (58), Expect = 1e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 198 gtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcggca 257 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| ||||||||||||| Sbjct: 258 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgacgt 317 Query: 418 ggcggcgcagcgcttccg 435 |||||||| |||||||| Sbjct: 318 ggcggcgctccgcttccg 335
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 115 bits (58), Expect = 1e-22 Identities = 118/138 (85%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 74635 gtacaagggggtggtgccgcagccgaacgggcggtggggggcgcagatctacgagcggca 74694 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| ||||||||||||| Sbjct: 74695 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgcgcctacgacgt 74754 Query: 418 ggcggcgcagcgcttccg 435 |||||||| |||||||| Sbjct: 74755 ggcggcgctccgcttccg 74772 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct: 122719 gtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcggca 122778 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| || |||||||||| Sbjct: 122779 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgacgt 122838 Query: 418 ggcggcgc 425 |||||||| Sbjct: 122839 ggcggcgc 122846
>ref|NM_184305.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1511 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct: 331 gtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcggca 390 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| || |||||||||| Sbjct: 391 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgacgt 450 Query: 418 ggcggcgc 425 |||||||| Sbjct: 451 ggcggcgc 458
>dbj|AK065008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E21, full insert sequence Length = 1512 Score = 95.6 bits (48), Expect = 1e-16 Identities = 108/128 (84%) Strand = Plus / Plus Query: 298 gtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctacgagcgcca 357 ||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||| || Sbjct: 331 gtacaagggggtggtgccgcagccgaacgggaggtggggggcgcagatctacgagcggca 390 Query: 358 ccagcgcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgc 417 | ||| || |||||||| |||||| | | ||||| | ||||| || |||||||||| Sbjct: 391 cgcgcgggtgtggctcgggacgttccccgacgaggaggcggcggcgcgggcctacgacgt 450 Query: 418 ggcggcgc 425 |||||||| Sbjct: 451 ggcggcgc 458
>gb|DQ147914.1| Glycine max RAV-like DNA-binding protein mRNA, complete cds Length = 1380 Score = 67.9 bits (34), Expect = 3e-08 Identities = 79/94 (84%) Strand = Plus / Plus Query: 290 tcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctac 349 ||||| || ||||| |||||||||||||| || ||||| || ||||| || ||||| ||| Sbjct: 334 tcgtcgaaatacaaaggcgtggtgccgcaaccgaacggtcgctggggagctcagatttac 393 Query: 350 gagcgccaccagcgcgtctggctcggcacgttca 383 ||| ||||||||||| ||||||||||| |||| Sbjct: 394 gagaagcaccagcgcgtgtggctcggcactttca 427
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgcggcgg 422 |||| |||||||||| ||| || ||||||||||||||||| | ||||||||| | |||| Sbjct: 45378 gcgtgtggctcggcatgtttaccggcgaggccgaggcggggcacgcctacgatgttgcgg 45437 Query: 423 cgcagcgcttccgcggcc 440 | |||| |||||||||| Sbjct: 45438 cacagcagttccgcggcc 45455
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgcggcgg 422 |||| |||||||||| ||| || ||||||||||||||||| | ||||||||| | |||| Sbjct: 19033286 gcgtgtggctcggcatgtttaccggcgaggccgaggcggggcacgcctacgatgttgcgg 19033227 Query: 423 cgcagcgcttccgcggcc 440 | |||| |||||||||| Sbjct: 19033226 cacagcagttccgcggcc 19033209 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacga 414 |||| |||||||||||||| || |||||||||||||||| | ||||||||| Sbjct: 18847365 gcgtgtggctcggcacgtttaccagcgaggccgaggcggggcacgcctacga 18847416 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcg 241 |||||||||| || |||||||| ||||||||||| ||||||||| Sbjct: 18847274 cgctgcagcgtgtgggcagcggtgccagcgcggtgatggacgcg 18847317
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacgacgcggcgg 422 |||| |||||||||| ||| || ||||||||||||||||| | ||||||||| | |||| Sbjct: 19044540 gcgtgtggctcggcatgtttaccggcgaggccgaggcggggcacgcctacgatgttgcgg 19044481 Query: 423 cgcagcgcttccgcggcc 440 | |||| |||||||||| Sbjct: 19044480 cacagcagttccgcggcc 19044463 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacga 414 |||| |||||||||||||| || |||||||||||||||| | ||||||||| Sbjct: 18858619 gcgtgtggctcggcacgtttaccagcgaggccgaggcggggcacgcctacga 18858670 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcg 241 |||||||||| || |||||||| ||||||||||| ||||||||| Sbjct: 18858528 cgctgcagcgtgtgggcagcggtgccagcgcggtgatggacgcg 18858571
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcgggccgcgcctacga 414 |||| |||||||||||||| || |||||||||||||||| | ||||||||| Sbjct: 145101 gcgtgtggctcggcacgtttaccagcgaggccgaggcggggcacgcctacga 145152 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacgcg 241 |||||||||| || |||||||| ||||||||||| ||||||||| Sbjct: 145010 cgctgcagcgtgtgggcagcggtgccagcgcggtgatggacgcg 145053
>gb|DQ455329.1| Medicago truncatula cDNA-AFLP fragment BT13M32_263 sequence Length = 335 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Minus Query: 290 tcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatctac 349 ||||| || ||||| ||||||||||| ||||| ||||| || ||||| || ||||| ||| Sbjct: 271 tcgtcgaaatacaaaggcgtggtgccacagcctaacggacgttggggagcacagatttac 212 Query: 350 gagcgccaccagcgcgtctggctcggcacgttca 383 ||| |||||||| || ||||| || ||||||| Sbjct: 211 gagaaacaccagcgtgtgtggcttggtacgttca 178
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 170 ccgtcgccggccgcgccggcgaccaagc 197 ||||||||||||||||||||||| |||| Sbjct: 1732283 ccgtcgccggccgcgccggcgacgaagc 1732256
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 170 ccgtcgccggccgcgccggcgaccaagc 197 ||||||||||||||||||||||| |||| Sbjct: 3067148 ccgtcgccggccgcgccggcgacgaagc 3067121
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 170 ccgtcgccggccgcgccggcgaccaagc 197 ||||||||||||||||||||||| |||| Sbjct: 2215844 ccgtcgccggccgcgccggcgacgaagc 2215817
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 363 gcgtctggctcggcacgttcacgggcgaggccgaggcggg 402 |||| |||||||||||||| || || |||||||||||||| Sbjct: 22021 gcgtgtggctcggcacgtttaccggtgaggccgaggcggg 22060
>ref|XM_470558.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 399 gcgcgtctggctcggcacgttca 421
>ref|NM_185233.2| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 735 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 404 cgcgcctacgacgcggcggcgcagcgcttccgcgg 438 |||||||||||||| ||||||| ||||||||||| Sbjct: 298 cgcgcctacgacgccgcggcgctccgcttccgcgg 332
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 4331602 gcgcgtctggctcggcacgttca 4331580 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 4349655 cgcgtctggctcggcacgttc 4349635
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 404 cgcgcctacgacgcggcggcgcagcgcttccgcgg 438 |||||||||||||| ||||||| ||||||||||| Sbjct: 71130 cgcgcctacgacgccgcggcgctccgcttccgcgg 71096
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 177 cggccgcgccggcgaccaagccg 199 ||||||||||||||||||||||| Sbjct: 122734 cggccgcgccggcgaccaagccg 122712
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 94895 gcgcgtctggctcggcacgttca 94917 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 76842 cgcgtctggctcggcacgttc 76862
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 404 cgcgcctacgacgcggcggcgcagcgcttccgcgg 438 |||||||||||||| ||||||| ||||||||||| Sbjct: 21257656 cgcgcctacgacgccgcggcgctccgcttccgcgg 21257622 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacg 239 |||||||||| || ||||||| ||||||||||| ||||||| Sbjct: 18838800 cgctgcagcgtgtgggcagcgacgccagcgcggtgatggacg 18838841
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 4331717 gcgcgtctggctcggcacgttca 4331695 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 4349770 cgcgtctggctcggcacgttc 4349750
>dbj|AK101949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075D23, full insert sequence Length = 1575 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 492 gcgcgtctggctcggcacgttca 514
>dbj|AK060527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F02, full insert sequence Length = 1249 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 361 gcgcgtctggctcggcacgttca 383 ||||||||||||||||||||||| Sbjct: 493 gcgcgtctggctcggcacgttca 515
>ref|XM_464403.1| Oryza sativa (japonica cultivar-group), mRNA Length = 600 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 404 cgcgcctacgacgcggcggcgc 425 |||||||||||||||||||||| Sbjct: 157 cgcgcctacgacgcggcggcgc 178
>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21, complete sequence Length = 143093 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacg 239 |||||||||| || ||||||| ||||||||||| ||||||| Sbjct: 54710 cgctgcagcgtgtgggcagcgacgccagcgcggtgatggacg 54751
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 404 cgcgcctacgacgcggcggcgc 425 |||||||||||||||||||||| Sbjct: 4959367 cgcgcctacgacgcggcggcgc 4959346
>dbj|AB178027.1| Ralstonia solanacearum insertion sequence IS1424 DNA Length = 4442 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 121 tctcgtggacgacgtgagcagcggca 146 |||||||||||||||| ||||||||| Sbjct: 1955 tctcgtggacgacgtgcgcagcggca 1980
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 404 cgcgcctacgacgcggcggcgc 425 |||||||||||||||||||||| Sbjct: 30493 cgcgcctacgacgcggcggcgc 30472
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 404 cgcgcctacgacgcggcggcgc 425 |||||||||||||||||||||| Sbjct: 104106 cgcgcctacgacgcggcggcgc 104085
>dbj|AK068656.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161N11, full insert sequence Length = 2121 Score = 44.1 bits (22), Expect = 0.38 Identities = 37/42 (88%) Strand = Plus / Plus Query: 198 cgctgcagcgcgtcggcagcggggccagcgcggtcatggacg 239 |||||||||| || ||||||| ||||||||||| ||||||| Sbjct: 848 cgctgcagcgtgtgggcagcgacgccagcgcggtgatggacg 889
>ref|NM_101197.3| Arabidopsis thaliana RAV1; DNA binding / transcription factor AT1G13260 (RAV1) mRNA, complete cds Length = 1575 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 390 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 449 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 450 tacgagaaacaccagcgcgtgtggctcgg 478
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05, complete sequence Length = 109126 Score = 42.1 bits (21), Expect = 1.5 Identities = 67/81 (82%), Gaps = 6/81 (7%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc---acgggcgaggccgaggcgggccgcgcctacgacgcg 418 ||||||||||||||||| ||| || | |||||||| |||| ||||||||||||| | Sbjct: 50856 cgcgtctggctcggcaccttcgagaccgccgaggccgcggcg---cgcgcctacgacgag 50912 Query: 419 gcggcgcagcgcttccgcggc 439 || |||| |||||||||||| Sbjct: 50913 gccgcgctccgcttccgcggc 50933
>ref|XM_470560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 346 cgcgtctggctcggcacgttc 366
>ref|XM_479169.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1285 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 502 cgcgtctggctcggcacgttc 522
>ref|XM_507393.1| PREDICTED Oryza sativa (japonica cultivar-group), B1056G08.120 mRNA Length = 1417 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 604 cgcgtctggctcggcacgttc 624
>ref|XM_506472.2| PREDICTED Oryza sativa (japonica cultivar-group), B1056G08.120 mRNA Length = 1447 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 515 cgcgtctggctcggcacgttc 535
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gaggccgaggcgggccgcgcc 409 ||||||||||||||||||||| Sbjct: 543011 gaggccgaggcgggccgcgcc 543031
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ccgtcgccggccgcgccggcg 190 ||||||||||||||||||||| Sbjct: 1420411 ccgtcgccggccgcgccggcg 1420431
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 ccgtcgccggccgcgccggcg 190 ||||||||||||||||||||| Sbjct: 2646528 ccgtcgccggccgcgccggcg 2646548
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 163 ggcgtctccgtcgccggccgcgccg 187 |||||| |||||||||||||||||| Sbjct: 70024 ggcgtcgccgtcgccggccgcgccg 70048
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 179 gccgcgccggcgaccaagccg 199 ||||||||||||||||||||| Sbjct: 89706 gccgcgccggcgaccaagccg 89726
>gb|AY091291.1| Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds Length = 1066 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 172 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 231 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 232 tacgagaaacaccagcgcgtgtggctcgg 260
>gb|AY063855.1| Arabidopsis thaliana putative DNA-binding protein RAV1 (At1g13260) mRNA, complete cds Length = 1312 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 255 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 314 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 315 tacgagaaacaccagcgcgtgtggctcgg 343
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 ccgtcgccggccgcgccggcg 190 ||||||||||||||||||||| Sbjct: 1736950 ccgtcgccggccgcgccggcg 1736930
>gb|DQ102384.2| Hordeum vulgare root abundant factor (RAF) gene, promoter region and complete cds Length = 3958 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 2976 cgcgtctggctcggcacgttc 2996
>gb|DQ102383.2| Hordeum vulgare root abundant factor (RAF) mRNA, complete cds Length = 1394 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 412 cgcgtctggctcggcacgttc 432
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 ggcgtctccgtcgccggccgcgccg 187 |||||| |||||||||||||||||| Sbjct: 22382792 ggcgtcgccgtcgccggccgcgccg 22382768 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cggcgggcggctgccgtcgt 293 |||||||||||||||||||| Sbjct: 14200980 cggcgggcggctgccgtcgt 14200999
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 25388165 cgcgtctggctcggcacgttc 25388145
>emb|BX816249.1|CNS0ABP0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1391 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 230 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 289 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 290 tacgagaaacaccagcgcgtgtggctcgg 318
>emb|BX815799.1|CNS0ABBS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1397 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 213 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 272 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 273 tacgagaaacaccagcgcgtgtggctcgg 301
>emb|BX817019.1|CNS0AAHR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH81ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1275 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 230 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 289 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 290 tacgagaaacaccagcgcgtgtggctcgg 318
>emb|BX841829.1|CNS09Y1T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS56ZA09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1387 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 391 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 450 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 451 tacgagaaacaccagcgcgtgtggctcgg 479
>gb|AE009576.1| Brucella melitensis 16M chromosome I, section 133 of 195 of the complete sequence Length = 10598 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 gaggccgaggcgggccgcgcc 409 ||||||||||||||||||||| Sbjct: 5749 gaggccgaggcgggccgcgcc 5729
>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete sequence Length = 103157 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 20667 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 20726 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 20727 tacgagaaacaccagcgcgtgtggctcgg 20755
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 cgcgcccgagcccggcgcgga 258 ||||||||||||||||||||| Sbjct: 3326441 cgcgcccgagcccggcgcgga 3326421
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gaggccgaggcgggccgcgcc 409 ||||||||||||||||||||| Sbjct: 564552 gaggccgaggcgggccgcgcc 564572
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 81255 cgcgtctggctcggcacgttc 81235
>dbj|AP004308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0552F09 Length = 134659 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 11882 cgcgtctggctcggcacgttc 11862
>dbj|AK109360.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B03, full insert sequence Length = 1433 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 506 cgcgtctggctcggcacgttc 526
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 ctcgtggacgacgtgagcagcggca 146 ||||||||||||||| ||||||||| Sbjct: 1437141 ctcgtggacgacgtgcgcagcggca 1437165
>dbj|AK067060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090P08, full insert sequence Length = 1285 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 502 cgcgtctggctcggcacgttc 522
>dbj|AK061047.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-F01, full insert sequence Length = 1417 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 cgcgtctggctcggcacgttc 382 ||||||||||||||||||||| Sbjct: 604 cgcgtctggctcggcacgttc 624
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 ggcgtctccgtcgccggccgcgccg 187 |||||| |||||||||||||||||| Sbjct: 22692703 ggcgtcgccgtcgccggccgcgccg 22692679 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 cggcgggcggctgccgtcgt 293 |||||||||||||||||||| Sbjct: 14282982 cggcgggcggctgccgtcgt 14283001
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 gaggccgaggcgggccgcgcc 409 ||||||||||||||||||||| Sbjct: 560847 gaggccgaggcgggccgcgcc 560867
>dbj|AB013886.1| Arabidopsis thaliana mRNA for RAV1, complete cds Length = 1276 Score = 42.1 bits (21), Expect = 1.5 Identities = 72/89 (80%) Strand = Plus / Plus Query: 287 ccgtcgtccaagtacaagggcgtggtgccgcagcccaacgggcggtggggcgcgcagatc 346 |||||||| || ||||| || |||||||| || || ||||| | ||||| || ||||| Sbjct: 230 ccgtcgtcaaaatacaaaggtgtggtgccacaaccaaacggaagatggggagctcagatt 289 Query: 347 tacgagcgccaccagcgcgtctggctcgg 375 |||||| ||||||||||| |||||||| Sbjct: 290 tacgagaaacaccagcgcgtgtggctcgg 318
>ref|XM_482924.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1071 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 400 gggccgcgcctacgacgcggcggc 423 |||||||||||||| ||||||||| Sbjct: 876 gggccgcgcctacgtcgcggcggc 899
>ref|NM_183654.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1077 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccgtcgccggccgcgccggc 189 |||||||||||||||||||| Sbjct: 314 ccgtcgccggccgcgccggc 333
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 cggcgggcggctgccgtcgt 293 |||||||||||||||||||| Sbjct: 45314 cggcgggcggctgccgtcgt 45295
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tcggcagcggggccagcgcggtca 233 ||||||||||||||| |||||||| Sbjct: 658366 tcggcagcggggccaccgcggtca 658343
>emb|AL627210.1| Human DNA sequence from clone RP11-355K23 on chromosome X Contains a novel pseudogene, complete sequence Length = 51288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cccactgcctccattcccac 26 |||||||||||||||||||| Sbjct: 10549 cccactgcctccattcccac 10568
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gtcgccggccgcgccggcga 191 |||||||||||||||||||| Sbjct: 1858327 gtcgccggccgcgccggcga 1858308
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tcggcagcggggccagcgcggtca 233 ||||||||||||||| |||||||| Sbjct: 315007 tcggcagcggggccaccgcggtca 314984
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgcgccggcgaccaagccgc 200 |||||||||||||||||||| Sbjct: 153152 cgcgccggcgaccaagccgc 153171
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 tcggcagcggggccagcgcggtca 233 ||||||||||||||| |||||||| Sbjct: 315157 tcggcagcggggccaccgcggtca 315134
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 ggcggcgcagcgcttccgcg 437 |||||||||||||||||||| Sbjct: 1798188 ggcggcgcagcgcttccgcg 1798207
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 gctgcagcgcgtcggcagcg 218 |||||||||||||||||||| Sbjct: 4593745 gctgcagcgcgtcggcagcg 4593726
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 gggccgcgcctacgacgcggcggc 423 |||||||||||||| ||||||||| Sbjct: 23396003 gggccgcgcctacgtcgcggcggc 23395980
>gb|AC007217.5| Homo sapiens chromosome 16 clone RP11-167B4, complete sequence Length = 173929 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgcctccattcccacattgc 31 |||||||||||||||||||| Sbjct: 7660 tgcctccattcccacattgc 7679
>gb|AC006112.4| Homo sapiens chromosome 16 clone RP11-472H7, complete sequence Length = 191158 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgcctccattcccacattgc 31 |||||||||||||||||||| Sbjct: 13049 tgcctccattcccacattgc 13030
>gb|AF304400.1|AF304400 Neisseria gonorrhoeae strain 17F porin (por) gene, por-PIB allele, partial cds Length = 975 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 aaggcgtctccgtcgccggc 180 |||||||||||||||||||| Sbjct: 200 aaggcgtctccgtcgccggc 219
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 ccgtcgccggccgcgccggc 189 |||||||||||||||||||| Sbjct: 65723 ccgtcgccggccgcgccggc 65742
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 cgaggccgaggcgggccgcg 407 |||||||||||||||||||| Sbjct: 8731056 cgaggccgaggcgggccgcg 8731037
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 cgcggcggcgcagcgcttcc 434 |||||||||||||||||||| Sbjct: 2962946 cgcggcggcgcagcgcttcc 2962927
>gb|AF257079.1|AF257079 Pseudorabies virus glycoprotein B GII (gB) gene, partial cds Length = 2724 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 cgggcgaggccgaggcgggccgcg 407 |||||||||||||||||| ||||| Sbjct: 214 cgggcgaggccgaggcggcccgcg 191
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 gggccgcgcctacgacgcggcggc 423 |||||||||||||| ||||||||| Sbjct: 77840 gggccgcgcctacgtcgcggcggc 77817
>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence Length = 180919 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cccactgcctccattcccac 26 |||||||||||||||||||| Sbjct: 93476 cccactgcctccattcccac 93495
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 cggccgcgccggcgaccaagccgc 200 ||||||||||||||||| |||||| Sbjct: 1760485 cggccgcgccggcgacccagccgc 1760508
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 404 cgcgcctacgacgcggcggcgcagcgct 431 |||| ||||| ||||||||||||||||| Sbjct: 692008 cgcggctacggcgcggcggcgcagcgct 692035
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 acgacgcggcggcgcagcgc 430 |||||||||||||||||||| Sbjct: 1932507 acgacgcggcggcgcagcgc 1932488
>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence Length = 128501 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cccactgcctccattcccac 26 |||||||||||||||||||| Sbjct: 85017 cccactgcctccattcccac 84998
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 394 cgaggcgggccgcgcctacgacgcggcggcgc 425 |||||||| | |||||||||||||| |||||| Sbjct: 1234839 cgaggcggccggcgcctacgacgcgccggcgc 1234870 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,133,471 Number of Sequences: 3902068 Number of extensions: 3133471 Number of successful extensions: 182881 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 176811 Number of HSP's gapped (non-prelim): 6071 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
