ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart19f06 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 84.0 bits (206), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 77 YDYDGYRLRVEFPR 90
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 84.0 bits (206), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 84.0 bits (206), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 84.0 bits (206), Expect = 3e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 83.6 bits (205), Expect = 4e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 82.8 bits (203), Expect = 6e-16 Identities = 39/74 (52%), Positives = 53/74 (71%), Gaps = 5/74 (6%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDG 266 R+YVG LP RT+D+ED+F +YG +R +D+K+ FAFVEF DPRDA++A Y DG Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75 Query: 267 RDFDGSRMIVEFAK 308 D+DG R+ VEF + Sbjct: 76 YDYDGYRLRVEFPR 89
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 79.7 bits (195), Expect = 5e-15 Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 257 G+ R+YVG LPS R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 13 GDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 72 Query: 258 LDGRDFDGSRMIVEFAK 308 +G D+ R+ VEF + Sbjct: 73 RNGYDYGQCRLRVEFPR 89
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 78.6 bits (192), Expect = 1e-14 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 257 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 258 LDGRDFDGSRMIVEFAK 308 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 78.6 bits (192), Expect = 1e-14 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 5/77 (6%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYN 257 G+ R+YVG LP+ R +DLEDLF +YGR+R +++K+ FAFV F DPRDA++A Y Sbjct: 12 GDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYG 71 Query: 258 LDGRDFDGSRMIVEFAK 308 +G D+ R+ VEF + Sbjct: 72 RNGYDYGQCRLRVEFPR 88
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 78.2 bits (191), Expect = 2e-14 Identities = 59/175 (33%), Positives = 77/175 (44%), Gaps = 3/175 (1%) Frame = +3 Query: 60 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 230 M RY RYGG T++YVG L + +LE F YG +R V + FAFVEF DP Sbjct: 1 MSRYG---RYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDP 57 Query: 231 RDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRC 410 RDA++A LDG+ GSR+ VE + P + RC Sbjct: 58 RDAEDAVRGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRC 106 Query: 411 FNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSPR 575 + CG GH+A DC + R S R + S + + SRS SPR Sbjct: 107 YECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPR 161
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 76.3 bits (186), Expect = 6e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 282 SRMIVEFAK 308 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 76.3 bits (186), Expect = 6e-14 Identities = 35/69 (50%), Positives = 49/69 (71%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+Y+GRL + R RD+E F YG++ VD+K+ + FVEF D RDAD+A Y L+G+D G Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62 Query: 282 SRMIVEFAK 308 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 76.3 bits (186), Expect = 6e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 282 SRMIVEFAK 308 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 76.3 bits (186), Expect = 6e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 282 SRMIVEFAK 308 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 76.3 bits (186), Expect = 6e-14 Identities = 33/69 (47%), Positives = 47/69 (68%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+++GRL R +D+E F YGR+R +D+K F FVEF DPRDAD+A Y LDG++ Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64 Query: 282 SRMIVEFAK 308 R+ +E A+ Sbjct: 65 ERVTIEHAR 73
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 75.1 bits (183), Expect = 1e-13 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 4/87 (4%) Frame = +3 Query: 60 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH----EFAFVEFSD 227 MPR D+ ++YVG LP R +++ED+F +YGR+++VD+K FAFVEF D Sbjct: 1 MPRGGSEDQ-----KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55 Query: 228 PRDADEARYNLDGRDFDGSRMIVEFAK 308 RDA++A DG +FDG R+ VEF + Sbjct: 56 HRDAEDAVRARDGYEFDGRRIRVEFTR 82
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/69 (47%), Positives = 48/69 (69%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+Y+GRL R +D++ F YGR+ VD+K+ + FVEF D RDAD+A Y L+G++ G Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62 Query: 282 SRMIVEFAK 308 R+IVE A+ Sbjct: 63 ERVIVEHAR 71
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 74.3 bits (181), Expect = 2e-13 Identities = 33/69 (47%), Positives = 50/69 (72%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+Y+GRLP+R RD+E F YG++ V MK+ F FV+F D RDAD+A ++L+G++ G Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62 Query: 282 SRMIVEFAK 308 R+I+EF + Sbjct: 63 ERVILEFPR 71
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 73.6 bits (179), Expect = 4e-13 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 2/160 (1%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 RLY+G++P R RD+E YG++ ++ MK+ FAFV+F D RDA++A ++LDG+ +G Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62 Query: 282 S--RMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRCFNCGIDGHWARDCKA 455 S R++VE A+ PP R ++ Sbjct: 63 SSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRTPP--------------RRRSRS 108 Query: 456 GDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSPR 575 D K R S SP + R +S SRSPSP+ Sbjct: 109 RDRK----RSRRSRSRSSSRSRSPVRESRRRSESRSPSPK 144
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 73.2 bits (178), Expect = 5e-13 Identities = 31/69 (44%), Positives = 51/69 (73%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 R+Y+GRL SR +D+E F YG++R V +K+ F FVEF D RDA++A ++L+G++ G Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63 Query: 282 SRMIVEFAK 308 R+I++++K Sbjct: 64 ERVILDYSK 72
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 71.6 bits (174), Expect = 1e-12 Identities = 35/70 (50%), Positives = 48/70 (68%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 +R+YVG LP R RDLE F YGR R + +K+ + FVEF D RDAD+A Y L+G++ Sbjct: 3 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 62 Query: 279 GSRMIVEFAK 308 G R++VE A+ Sbjct: 63 GERVVVEPAR 72
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 70.9 bits (172), Expect = 3e-12 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-----FAFVEFSDPRDADEARYNLDGR 269 +YVG LP R R++EDLF +YG V +D+K +AFVEF D RDA++A + DG Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68 Query: 270 DFDGSRMIVEFA 305 DFDG R+ VE A Sbjct: 69 DFDGHRLRVELA 80
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 69.3 bits (168), Expect = 7e-12 Identities = 54/168 (32%), Positives = 74/168 (44%), Gaps = 5/168 (2%) Frame = +3 Query: 87 YGGN--TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEAR 251 +GG+ T++YVG L + +LE F YG +R V + FAFVEF DPRDA++A Sbjct: 34 WGGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAV 93 Query: 252 YNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGRCFNCGIDG 431 LDG+ GSR+ VE + P + RC+ CG G Sbjct: 94 RGLDGKVICGSRVRVELS-----------TGMPRRSRFDRPPARRPFDPNDRCYECGEKG 142 Query: 432 HWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSPR 575 H+A DC + R S R + S + + SRS SPR Sbjct: 143 HYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPR 190
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 61.2 bits (147), Expect = 2e-09 Identities = 43/166 (25%), Positives = 64/166 (38%), Gaps = 8/166 (4%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 T+++VG L +TR ++ +LF +YG V D+ + FV D +A L+GR D Sbjct: 86 TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIKELNGRVVD 145 Query: 279 GSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARDC 449 G + V+ + P PG G +C+ CG GHW+++C Sbjct: 146 GQPLKVQVS----------------------TSRVRPKPGMGDPEQCYRCGRSGHWSKEC 183 Query: 450 KAGDWKNRCYRCGDSGHIERDCQNSPKKP-----QRGKSYSRSPSP 572 R Y G P P R + Y R P P Sbjct: 184 P------RLYGSAGGG-------REPPSPLSAGGYRDRMYGRDPYP 216 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 G +L++G L +T+ +L LF +YG V D+ + FV + +A NL+G Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYT 64 Query: 273 FDGSRMIVEFAK 308 + + VE AK Sbjct: 65 LNEFAIKVEAAK 76
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 60.8 bits (146), Expect = 3e-09 Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 278 ++VG TR DLE LF +YGRV VDMK +AFV F D RDA++A LD F + Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63 Query: 279 GSRMIVEFAK 308 R+ VE+AK Sbjct: 64 KRRLSVEWAK 73 Score = 38.5 bits (88), Expect = 0.014 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = +3 Query: 123 PSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 248 P RT+ D+E F YG+V +V ++ F+FV+F DA +A Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKA 143
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 59.7 bits (143), Expect = 6e-09 Identities = 28/70 (40%), Positives = 43/70 (61%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 TRL+VGR+P + D+ D F YG++ + + F FVE D RDA + + G++F Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFM 63 Query: 279 GSRMIVEFAK 308 GSR++VE A+ Sbjct: 64 GSRIVVEPAR 73
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 257 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 258 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 428 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 429 GHWARDC 449 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 275 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 276 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARD 446 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKEGHWSKE 174 Query: 447 C 449 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 257 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 258 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 428 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 429 GHWARDC 449 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 257 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 258 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 428 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 429 GHWARDC 449 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 3/73 (4%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDG 266 + ++YVG LPS +++LE++F R+GR+R V + FAFVE+ D RDA++A LDG Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61 Query: 267 RDFDGSRMIVEFA 305 G R VE + Sbjct: 62 SRICGVRARVELS 74
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 257 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 258 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 428 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 429 GHWARDC 449 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYN 257 +++ +T+L+VG + ++L F YG V D+ ++AFV DA EA Sbjct: 71 KNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 130 Query: 258 LDGRDFDGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGID 428 LD +F G RM V+ + PG G C+ CG + Sbjct: 131 LDNTEFQGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKE 168 Query: 429 GHWARDC 449 GHW+++C Sbjct: 169 GHWSKEC 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 275 +T+L+VG + ++L F YG V D+ ++AFV DA EA LD +F Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEF 136 Query: 276 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSG---RCFNCGIDGHWARD 446 G RM V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKRMHVQLSTSRLRTA----------------------PGMGDQSGCYRCGKEGHWSKE 174 Query: 447 C 449 C Sbjct: 175 C 175 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/69 (30%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +L++G LP +++ LF +YG+V D+ + FV D A++A NL G Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHG 62 Query: 282 SRMIVEFAK 308 + VE +K Sbjct: 63 VNINVEASK 71
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 57.4 bits (137), Expect = 3e-08 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF 275 +T+L+VG + S ++L F YG V D+ ++AFV DA EA LD F Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAISGLDNTAF 136 Query: 276 DGSRMIVEFAKXXXXXXXXXXXXXXXXXXXXXXXXXXPPPGSGR---CFNCGIDGHWARD 446 G M V+ + PG G C+ CG +GHW+++ Sbjct: 137 QGKLMSVKLSTSRLRTA----------------------PGMGERTGCYRCGQEGHWSKE 174 Query: 447 CKAGDWKNRCYRCGDS 494 C +N YR G S Sbjct: 175 CPLD--QNGSYREGPS 188 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +++VG L T ++ LF +YG++ D+ F FV +ADEA NL +G Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNG 62 Query: 282 SRMIVEFAK 308 M VE +K Sbjct: 63 MAMNVEMSK 71
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 56.2 bits (134), Expect = 6e-08 Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%) Frame = +3 Query: 60 MPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDP 230 MPRY E D ++YVG L S ++E F +YG +R+V + FAFVEF D Sbjct: 1 MPRYREWDLA---CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR 57 Query: 231 RDADEARYNLDGRDFDGSRMIVEFA 305 RDA++A LDG G+R+ VE + Sbjct: 58 RDAEDATRALDGTRCCGTRIRVEMS 82
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 56.2 bits (134), Expect = 6e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 248 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 249 RYNLDGRDFDGSRMIVEFA 305 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 56.2 bits (134), Expect = 6e-08 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEA 248 RD + ++YVG L + +LE FG YG +R V + FAFVEF DPRDA +A Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADA 62 Query: 249 RYNLDGRDFDGSRMIVEFA 305 LDGR G R+ VE + Sbjct: 63 VRELDGRTLCGCRVRVELS 81
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 53.9 bits (128), Expect = 3e-07 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 230 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESP 59 Query: 231 RDADEARYNLDGRDFDGSRMIVEFA 305 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 53.1 bits (126), Expect = 5e-07 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 99 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 133 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 500 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 501 IERDC 515 + +DC Sbjct: 63 LAKDC 67 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + + CY CG GH+ RDC ++ ++ Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 118 Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/50 (40%), Positives = 28/50 (56%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG GH A+DC + CY CG GHI +DC+ PK+ + Y+ Sbjct: 54 CYRCGESGHLAKDCDLQE-DEACYNCGRGGHIAKDCK-EPKREREQCCYN 101 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 137 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 172 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 119 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 154
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 93 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 127 Score = 52.8 bits (125), Expect = 7e-07 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 20/59 (33%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR--------------------CYRCGDSGHIERDC 515 S CF CG GHWAR+C G + R CYRCG+SGH+ +DC Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + + CY CG GH+ RDC ++ ++ Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 112 Score = 47.4 bits (111), Expect = 3e-05 Identities = 21/50 (42%), Positives = 29/50 (58%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG GH A+DC + K CY CG GHI +DC+ PK+ + Y+ Sbjct: 48 CYRCGESGHLAKDCDLQEDK-ACYNCGRGGHIAKDCK-EPKREREQCCYN 95 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 131 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 166 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 113 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 148
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 53.1 bits (126), Expect = 5e-07 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 500 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 501 IERDC 515 + +DC Sbjct: 63 LAKDC 67 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + + CY CG GH+ RDC ++ ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG GH A+DC + + CY CG GHI +DC+ PK+ + Y+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK-EPKREREQCCYN 100 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 53.1 bits (126), Expect = 5e-07 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 500 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 501 IERDC 515 + +DC Sbjct: 63 LAKDC 67 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + + CY CG GH+ RDC ++ ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG GH A+DC + + CY CG GHI +DC+ PK+ + Y+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK-EPKREREQCCYN 100 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 53.1 bits (126), Expect = 5e-07 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+NCG GH ARDC D + +CY CG+ GHI++DC Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 26/65 (40%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR--------------------------CYRCGDSGH 500 S CF CG GHWAR+C G + R CYRCG+SGH Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62 Query: 501 IERDC 515 + +DC Sbjct: 63 LAKDC 67 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCK--AGDWKNRCYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + + CY CG GH+ RDC ++ ++ Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG GH A+DC + + CY CG GHI +DC+ PK+ + Y+ Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCK-EPKREREQCCYN 100 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH A +C N CYRCG+SGH+ R+C Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171 Score = 43.9 bits (102), Expect = 3e-04 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC K +CYRCG++GH+ +C + Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 53.1 bits (126), Expect = 5e-07 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 278 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD +F Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63 Query: 279 GSRMIVEFAK 308 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 38.5 bits (88), Expect = 0.014 Identities = 17/39 (43%), Positives = 25/39 (64%) Frame = +3 Query: 132 TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 248 TRTRDLE F YG++ +V ++ FAF+++ DA A Sbjct: 109 TRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRA 147
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 52.8 bits (125), Expect = 7e-07 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKN-----RCYRCGDSGHIERDCQNSPKKPQRG 545 S C NCG +GH+AR+C D K C+RCG+ GH+ R+C N + G Sbjct: 15 STSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAG 68 Score = 52.0 bits (123), Expect = 1e-06 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCK------AGDWKNRCYRCGDSGHIERDCQN 521 G C+ CG GH +RDC +G CY+CGD+GHI RDC N Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPN 185 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 5/63 (7%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDC----KAGDWKN-RCYRCGDSGHIERDCQNSPKKPQRGKSYSR 560 G+ CF CG GH +RDC K G K CY+CG GH+ RDC +S + G R Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127 Query: 561 SPS 569 S Sbjct: 128 GRS 130 Score = 50.8 bits (120), Expect = 3e-06 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKA----GDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRS 563 G +C+ CG GH +R+C + G CY+CG GHI R+C P+ G SY S Sbjct: 194 GDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISREC------PEAGGSYGGS 247 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 5/49 (10%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDC-----KAGDWKNRCYRCGDSGHIERDCQNSPK 530 S CF CG +GH +R+C C+RCG++GH+ RDC NS K Sbjct: 42 STTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAK 90 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCK------AGDWKNRCYRCGDSGHIERDCQNS 524 G C+ CG GH +RDC +G +CY+CG+SGH+ R+C ++ Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDC---------KAGDWKNRCYRCGDSGHIERDCQNS 524 G C+ CG GH +R+C G CY+CG++GHI RDC +S Sbjct: 220 GDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 52.4 bits (124), Expect = 9e-07 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF--D 278 ++ G R DLE LF +YG+V VDMK FAFV D RDA++A LD ++ Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63 Query: 279 GSRMIVEFAK 308 G R+ VE+ K Sbjct: 64 GRRLRVEWTK 73 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 11/66 (16%) Frame = +3 Query: 84 RYGGNTRLYVGRLPSRT-----------RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDP 230 R GG+ R G PS+T RTRDLE F YG++ +V ++ FAF+++ Sbjct: 81 RSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQ 140 Query: 231 RDADEA 248 DA A Sbjct: 141 EDATRA 146
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 52.4 bits (124), Expect = 9e-07 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 230 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV F P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESP 59 Query: 231 RDADEARYNLDGRDFDGSRMIVEFA 305 DA + +++G+ DG + VE A Sbjct: 60 ADAKDVARDMNGKSLDGKAIKVEQA 84
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 52.4 bits (124), Expect = 9e-07 Identities = 20/49 (40%), Positives = 27/49 (55%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSY 554 C+NC GH A +C + CY CG +GH+ RDC +SP Q + Y Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECY 86 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDCQNS 524 P C+ CG GH RDC + + CY+CG GHI RDC+ + Sbjct: 54 PQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTN 101 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 12/71 (16%) Frame = +3 Query: 387 PPPGSG-RCFNCGIDGHWARDCKAGDWKN-----------RCYRCGDSGHIERDCQNSPK 530 P P G C+ CG GH ARDC+ ++ CY CG GH RDC K Sbjct: 77 PNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK 136 Query: 531 KPQRGKSYSRS 563 GK RS Sbjct: 137 CYSCGKIGHRS 147 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/39 (46%), Positives = 22/39 (56%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 C+ CG GH ARDC G +CY CG GH +CQ + Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA 153 Score = 37.7 bits (86), Expect = 0.024 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C++CG GH + +C+ CY+C GHI +C Sbjct: 136 KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 52.0 bits (123), Expect = 1e-06 Identities = 21/44 (47%), Positives = 30/44 (68%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 521 P G +CFNCG GH R+CKA + +C++CG GH+ +DC+N Sbjct: 386 PRGPLKCFNCGKFGHMQRECKA-PRQIKCFKCGKIGHMAKDCKN 428 Score = 31.6 bits (70), Expect = 1.7 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 393 PGSGRCFNCGIDGHWARDCKAG 458 P +CF CG GH A+DCK G Sbjct: 408 PRQIKCFKCGKIGHMAKDCKNG 429
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 8/85 (9%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDP 230 E DR G +L++G L + T + LE +FG+YGR+ R + FAFV P Sbjct: 3 EADRPG---KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESP 59 Query: 231 RDADEARYNLDGRDFDGSRMIVEFA 305 DA +A +++G+ DG + VE A Sbjct: 60 ADAKDAARDMNGKSLDGKAIKVEQA 84
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 251 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 252 YNLDGRDFDGSRMIVEFAK 308 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 8/79 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 251 NT L+V + TR+ DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 252 YNLDGRDFDGSRMIVEFAK 308 +NLD + G ++ ++FA+ Sbjct: 69 HNLDRKWICGRQIEIQFAQ 87
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM E Sbjct: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF +P +A++A ++DG DG + Sbjct: 197 MHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 50.8 bits (120), Expect = 3e-06 Identities = 21/37 (56%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+CKA K C+RCG GH +DC Sbjct: 401 KCFNCGKEGHLARNCKAPRRKG-CWRCGQEGHQMKDC 436
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF--------AFVEFSDPRDADEAR 251 NT L++ + TR DL FGRYG + V + +F A+V+F D RDA++A Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68 Query: 252 YNLDGRDFDGSRMIVEFAK 308 YNL+ + G ++ ++FA+ Sbjct: 69 YNLNRKWVCGRQIEIQFAQ 87
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 50.1 bits (118), Expect = 5e-06 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 14/97 (14%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGN-----TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE- 203 S S+ + P+ DE++R + T++++GRL + ++F YG+++ +DM + Sbjct: 114 SRSKSKQPKRDEKERKRRSPSPRPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDR 173 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRM 290 +A+VEF P +A++A ++DG DG + Sbjct: 174 YHPHLSKGYAYVEFEAPEEAEKALKHMDGGQIDGQEI 210
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 49.3 bits (116), Expect = 8e-06 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE---FAFVEFSDPRDADEARYNLDGR 269 TR+YVG L + + DLE F +YG++ V + FAFVEF DA++A L+G Sbjct: 7 TRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGS 66 Query: 270 DFDGSRMIVEFAK 308 + GS++ VE +K Sbjct: 67 ELLGSQLRVEISK 79
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 49.3 bits (116), Expect = 8e-06 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+CKA K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCKA-PRKKGCWKCGKEGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 49.3 bits (116), Expect = 8e-06 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+CKA K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCKA-PRKKGCWKCGKEGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+CKA K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCKA-PRKKGCWKCGREGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/84 (29%), Positives = 45/84 (53%) Frame = +3 Query: 57 RMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRD 236 R P + ++ NTRL+V P + +L ++FG +G ++ V + + FAFVEF + Sbjct: 111 RPPMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES 170 Query: 237 ADEARYNLDGRDFDGSRMIVEFAK 308 A +A + G+ F + V ++K Sbjct: 171 AAKAIEEVHGKSFANQPLEVVYSK 194
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 48.9 bits (115), Expect = 1e-05 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+CKA K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCKA-PRKKGCWKCGREGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCKAPRKK 410
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDC 425 Score = 29.3 bits (64), Expect = 8.4 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GH+ R+C+ KK Sbjct: 390 KCFNCGKEGHLARNCRAPRKK 410
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 396 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDC 431 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 456 GDWKNRCYRCGDSGHIERDCQNSPKK 533 G + +C+ CG GH+ R+C+ KK Sbjct: 391 GQKRIKCFNCGKEGHLARNCRAPRKK 416
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 48.5 bits (114), Expect = 1e-05 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNR--CYRCGDSGHIERDCQNSPKK 533 C+NCG GH A+DCK + R CY CG GH+ RDC ++ Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQ 110 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+ CG GH ARDC + +CY CG GHI++DC Sbjct: 91 CYTCGRLGHLARDCDRQK-EQKCYSCGKLGHIQKDC 125 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/50 (42%), Positives = 30/50 (60%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 C+ CG G A++C N CY CG SGHI +DC++ PK+ +R Y+ Sbjct: 47 CYCCGESGRNAKNCVL--LGNICYNCGRSGHIAKDCKD-PKRERRQHCYT 93 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNS 524 +C++CG GH +DC + +CYRCG+ GH+ +C + Sbjct: 111 KCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCSKA 146
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKN--RCYRCGDSGHIERDCQN 521 C+ CG H A+DC D + +CY CG +GH+ RDCQN Sbjct: 94 CYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN 133 Score = 44.3 bits (103), Expect = 3e-04 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+ CG GH +RDC+ CY C ++GHI +DC Sbjct: 117 KCYTCGQAGHMSRDCQND---RLCYNCNETGHISKDC 150 Score = 44.3 bits (103), Expect = 3e-04 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQR 542 +C+NCG GH +C RC+ C +GHI R+C PKK R Sbjct: 48 QCYNCGETGHVRSECTV----QRCFNCNQTGHISRECP-EPKKTSR 88 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNR-----CYRCGDSGHIERDC 515 RCFNC GH +R+C +R CY+CG H+ +DC Sbjct: 66 RCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC 107 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 C+ CG GH A DC D + CY C GH++ DC Sbjct: 6 CYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDC 425 Score = 29.3 bits (64), Expect = 8.4 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GH+ R+C+ KK Sbjct: 390 KCFNCGKEGHLARNCRAPRKK 410
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 396 KCFNCGKEGHLARNCRA-PRKKGCWKCGKEGHQMKDC 431 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +3 Query: 456 GDWKNRCYRCGDSGHIERDCQNSPKK 533 G + +C+ CG GH+ R+C+ KK Sbjct: 391 GQKRIKCFNCGKEGHLARNCRAPRKK 416
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 48.5 bits (114), Expect = 1e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHTARNCRA-PRKKGCWKCGKEGHQMKDC 425
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCRAPRKK 410
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 48.1 bits (113), Expect = 2e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 P S +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 383 PRKSIKCFNCGKEGHTAKNCRA-PRKKGCWKCGREGHQMKDC 423
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 7/59 (11%) Frame = +3 Query: 393 PGSG-------RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGK 548 PG G RC+NCG GH AR C+ G C+ CG GH++++C+ K+ RGK Sbjct: 369 PGKGKGNGQPQRCYNCGKPGHQARQCRQG---IICHNCGKRGHMQKECRG--KRDIRGK 422
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCRAPRKK 410
>GAG_HV1ND (P18800) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 496 Score = 48.1 bits (113), Expect = 2e-05 Identities = 20/42 (47%), Positives = 28/42 (66%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 P S +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 383 PRKSIKCFNCGKEGHTAKNCRA-PRKKGCWKCGREGHQMKDC 423
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 48.1 bits (113), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKDC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCRAPRKK 410
>GAG_HV1EL (P04592) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C+RCG GH +DC Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWRCGKEGHQLKDC 426
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 248 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 +DG DG + V+ A+ Sbjct: 72 MDAMDGAVLDGRELRVQMAR 91
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 248 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 248 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 248 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 47.8 bits (112), Expect = 2e-05 Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA 248 G T L V L RT L +F +YGRV R+ FAFV F D RDA++A Sbjct: 11 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 70 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 +DG DG + V+ A+ Sbjct: 71 MDAMDGAVLDGRELRVQMAR 90
>POL_HV1A2 (P03369) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1436 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C+RCG GH +DC Sbjct: 392 KCFNCGKEGHIAKNCRA-PRKKGCWRCGREGHQMKDC 427
>POL_HV1EL (P04589) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C+RCG GH +DC Sbjct: 391 KCFNCGKEGHIAKNCRA-PRKKGCWRCGKEGHQLKDC 426
>GAG_HV1A2 (P03349) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 501 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C+RCG GH +DC Sbjct: 392 KCFNCGKEGHIAKNCRA-PRKKGCWRCGREGHQMKDC 427
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 384 KCFNCGKEGHLAKNCRA-PRKKGCWKCGKEGHQMKDC 419
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 47.4 bits (111), Expect = 3e-05 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKK 533 +CFNCG GH A++C+A K C++CG GH +DC N ++ Sbjct: 390 KCFNCGKVGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTNEGRQ 431
>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 47.4 bits (111), Expect = 3e-05 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKK 533 +CFNCG GH A++C+A K C++CG GH +DC N ++ Sbjct: 390 KCFNCGKVGHIAKNCRA-PRKKGCWKCGKEGHQMKDCTNEGRQ 431
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 402 GRCFNCGIDGHWARDCKAGDW-KNRCYRCGDSGHIERDCQN 521 G C NCGI+GH+A DC + C CG GH +DCQN Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQN 656 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCK----AGDWKNRCYRCGDSGHIERDCQNSPKKPQ 539 P G C NCG +GH+A+DC+ + C RC + GH +C PK Q Sbjct: 634 PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKDLQ 688 Score = 33.5 bits (75), Expect = 0.45 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 408 CFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDCQNSPKKPQ 539 C NC GH+A DC + + C CG GH DC + PK P+ Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC-DQPKVPR 638 Score = 32.3 bits (72), Expect = 0.99 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +3 Query: 396 GSGRCFNCGID---GHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQ 539 G+G F D G+W G+ C+ CG+ GHI ++C + PK P+ Sbjct: 547 GNGNTFGEPSDNQRGNW----DGGERPRGCHNCGEEGHISKEC-DKPKVPR 592
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKS 551 +C+NCG GH AR C+ G C+ CG GH+++DC+ +K Q+G + Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR---QKKQQGNN 428
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKS 551 +C+NCG GH AR C+ G C+ CG GH+++DC+ +K Q+G + Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR---QKKQQGNN 428
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKS 551 +C+NCG GH AR C+ G C+ CG GH+++DC+ +K Q+G + Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR---QKKQQGNN 428
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKS 551 +C+NCG GH AR C+ G C+ CG GH+++DC+ +K Q+G + Sbjct: 386 KCYNCGKPGHLARQCRQG---IICHHCGKRGHMQKDCR---QKKQQGNN 428
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 384 KCFNCGKEGHLAKNCRA-PRKKGCWKCGKEGHQMKDC 419
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDC 425
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDC 425
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 47.0 bits (110), Expect = 4e-05 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRH--VDMKHEFAFVEFSDPRDADEA 248 E ++ G RLY+G L S +L++LF YG + ++ + FAF++ +A+ A Sbjct: 105 EEIKFSGRNRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERA 164 Query: 249 RYNLDGRDFDGSRMIVEFA 305 + +LDGR + + FA Sbjct: 165 KKDLDGRMRKNKPIRIRFA 183
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG DGH AR C+A + C++CG SGH+ +C Sbjct: 389 KCWNCGKDGHSARQCRA-PRRQGCWKCGKSGHVMANC 424
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG DGH AR C+A + C++CG SGH+ +C Sbjct: 389 KCWNCGKDGHSARQCRA-PRRQGCWKCGKSGHVMANC 424
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 393 KCFNCGKEGHIAKNCRA-PRKRGCWKCGKEGHQMKDC 428
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 393 KCFNCGKEGHIAKNCRA-PRKRGCWKCGKEGHQMKDC 428
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDC 425
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 47.0 bits (110), Expect = 4e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 390 KCFNCGKEGHIAKNCRA-PRKKGCWKCGKEGHQMKDC 425
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 263 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 181 Query: 264 GRDFDGSRMIVEFA 305 G +G ++ V A Sbjct: 182 GTVVEGRKIEVNNA 195
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 263 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 177 Query: 264 GRDFDGSRMIVEFA 305 G +G ++ V A Sbjct: 178 GTVVEGRKIEVNNA 191
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 46.6 bits (109), Expect = 5e-05 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARYNLD 263 RL+V +P R R DL +FG++G++ V++ F FV F + DAD AR L Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 176 Query: 264 GRDFDGSRMIVEFA 305 G +G ++ V A Sbjct: 177 GTVVEGRKIEVNNA 190
>POL_HV1OY (P20892) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1433 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 389 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDC 424 Score = 30.0 bits (66), Expect = 4.9 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = +3 Query: 456 GDWKN-----RCYRCGDSGHIERDCQNSPKK 533 G++KN +C+ CG GHI ++C+ KK Sbjct: 379 GNFKNQRKTVKCFNCGKEGHIAKNCRAPRKK 409
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 46.6 bits (109), Expect = 5e-05 Identities = 20/55 (36%), Positives = 29/55 (52%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSR 560 G +C+ CG GH AR C+ G C+ CG GH+++DC+ P + SR Sbjct: 382 GVQKCYYCGKPGHLARQCRQGII---CHHCGKRGHMQKDCRQKKGNPTSQQGNSR 433
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH ++C Sbjct: 390 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKEC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCRAPRKK 410
>GAG_HV1OY (P20889) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 498 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 389 KCFNCGKEGHIAKNCRA-PRKKGCWKCGREGHQMKDC 424 Score = 30.0 bits (66), Expect = 4.9 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 5/31 (16%) Frame = +3 Query: 456 GDWKN-----RCYRCGDSGHIERDCQNSPKK 533 G++KN +C+ CG GHI ++C+ KK Sbjct: 379 GNFKNQRKTVKCFNCGKEGHIAKNCRAPRKK 409
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH AR+C+A K C++CG GH ++C Sbjct: 390 KCFNCGKEGHIARNCRA-PRKKGCWKCGKEGHQMKEC 425 Score = 30.0 bits (66), Expect = 4.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPKK 533 +C+ CG GHI R+C+ KK Sbjct: 390 KCFNCGKEGHIARNCRAPRKK 410
>GAG_HV1Z2 (P12495) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 46.2 bits (108), Expect = 7e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 392 KCFNCGKEGHIAKNCRAPRRKG-CWKCGKEGHQLKDC 427
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 46.2 bits (108), Expect = 7e-05 Identities = 21/55 (38%), Positives = 32/55 (58%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPS 569 RC+NCG +GH A+ C+A + C++CG SGHI +C P+R + P+ Sbjct: 389 RCWNCGKEGHSAKQCRA-PRRQGCWKCGKSGHIMANC------PERQAGFLDGPT 436
>POL_HV1Z2 (P12499) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1435 Score = 46.2 bits (108), Expect = 7e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +CFNCG +GH A++C+A K C++CG GH +DC Sbjct: 392 KCFNCGKEGHIAKNCRAPRRKG-CWKCGKEGHQLKDC 427
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 45.8 bits (107), Expect = 9e-05 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 15/55 (27%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCK---------------AGDWKNRCYRCGDSGHIERDC 515 GSG CF CG GH+ARDC G CY+CG+ GH R+C Sbjct: 156 GSG-CFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209 Score = 35.8 bits (81), Expect = 0.090 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAG 458 G G C+ CG DGH+AR+C +G Sbjct: 192 GGGGCYKCGEDGHFARECTSG 212 Score = 32.3 bits (72), Expect = 0.99 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 474 CYRCGDSGHIERDCQNS 524 C++CG+SGH RDC S Sbjct: 159 CFKCGESGHFARDCSQS 175
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 45.8 bits (107), Expect = 9e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 RC+NCG +GH A+ C+A + C++CG SGHI +C Sbjct: 389 RCWNCGKEGHSAKQCRA-PRRQGCWKCGKSGHIMANC 424
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 45.8 bits (107), Expect = 9e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG SGHI +C Sbjct: 388 KCWNCGKEGHSARQCRA-PRRQGCWKCGKSGHIMANC 423
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 45.8 bits (107), Expect = 9e-05 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG SGHI +C Sbjct: 388 KCWNCGKEGHSARQCRA-PRRQGCWKCGKSGHIMANC 423
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 45.8 bits (107), Expect = 9e-05 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKK 533 P RC+ CG GH R+CK + +CY CG GH R+C++ K Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK----QQKCYHCGKPGHQARNCRSKNGK 442
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 45.8 bits (107), Expect = 9e-05 Identities = 19/48 (39%), Positives = 26/48 (54%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKK 533 P RC+ CG GH R+CK + +CY CG GH R+C++ K Sbjct: 399 PEDGRRCYGCGKTGHLKRNCK----QQKCYHCGKPGHQARNCRSKNGK 442
>POL_HV2G1 (P18042) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/55 (38%), Positives = 31/55 (56%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPS 569 RC+NCG +GH AR C+A + C++CG +GH+ C P+R + R S Sbjct: 390 RCWNCGKEGHSARQCRA-PRRQGCWKCGKTGHVMAKC------PERQAGFLRDGS 437
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSP 572 CFNC GH AR CK RC CG GH+ +C +K + R+ +P Sbjct: 377 CFNCKKPGHLARQCKEA---KRCNNCGKPGHLAANCWQGGRKTSGNEKVGRAAAP 428
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/80 (28%), Positives = 47/80 (58%), Gaps = 7/80 (8%) Frame = +3 Query: 90 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEA 248 G ++++ + LP +DL +LFG +G+++ V + +F AFVEF+ ++A+ A Sbjct: 714 GKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETA 773 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 L+G G R+++++A+ Sbjct: 774 MSQLEGVHLLGRRLVMQYAE 793 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 257 RL++ + D LF +YG + V + + F +V+F DA A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 258 LDGRDFDG 281 LD + F G Sbjct: 371 LDKQIFQG 378 Score = 29.6 bits (65), Expect = 6.4 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYN 257 +RL V LP L + F + G V V + +FAF+ + A+ A Sbjct: 2 SRLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKY 61 Query: 258 LDGRDFDGSRMIVEFAK 308 + D +R+ VEFAK Sbjct: 62 FNKSFIDTARIEVEFAK 78
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 + RL+V L T+ +LE +F +G++ + + + FA+V+++DP A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 252 YNLDGRDFDG 281 NLDG+ F G Sbjct: 354 RNLDGKIFQG 363 Score = 43.1 bits (100), Expect = 6e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 257 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 697 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 756 Query: 258 LDGRDFDGSRMIVEFA 305 L G R+++EFA Sbjct: 757 LKNTHLLGRRLVLEFA 772
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 518 PPP +C+NCG GH R C K +C +CG GH+ +DC+ Sbjct: 396 PPP---KCYNCGKFGHMQRQCPEPR-KIKCLKCGKPGHLAKDCR 435
>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 RC+NCG +GH AR C+A + C++CG +GH+ C Sbjct: 390 RCWNCGKEGHSARQCRA-PRRQGCWKCGKTGHVMAKC 425
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 282 SRMIVEFA 305 R+ VE + Sbjct: 140 KRINVELS 147
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 282 SRMIVEFA 305 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +3 Query: 102 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 275 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 276 DGSRMIVEFAK 308 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 282 SRMIVEFA 305 R+ VE + Sbjct: 140 KRINVELS 147
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/68 (32%), Positives = 38/68 (55%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDG 281 +++VG + + +++L LF R GRV D+ ++AFV DA A L+G++ G Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKG 139 Query: 282 SRMIVEFA 305 R+ VE + Sbjct: 140 KRINVELS 147 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +3 Query: 102 RLYVGRLPSRTRT-RDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDF- 275 +++VG + T +L LF YG V + +FAFV + A A L G + Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGAVRAIEALHGHELR 61 Query: 276 DGSRMIVEFAK 308 G ++VE ++ Sbjct: 62 PGRALVVEMSR 72
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDC---KAGDWKNRCYRCGDSGHIERDCQNSPKK 533 PPPG C+ C +GHWARDC G C C D H +RDC K Sbjct: 341 PPPGP--CYRCLKEGHWARDCPTKATGPPPGPCPICKDPSHWKRDCPTLKSK 390
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDC---KAGDWKNRCYRCGDSGHIERDCQNSPKK 533 PPPG C+ C +GHWARDC G C C D H +RDC K Sbjct: 341 PPPGP--CYRCLKEGHWARDCPTKTTGPPPGPCPICKDPSHWKRDCPTLKSK 390
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 252 YNLDGRDFDGSRMIVEFA 305 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 252 YNLDGRDFDGSRMIVEFA 305 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 N L V L T RDL ++F +YG + V + ++ FAFV F + DA EA+ Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 252 YNLDGRDFDGSRMIVEFA 305 +G + DG R+ V+F+ Sbjct: 177 ERANGMELDGRRIRVDFS 194
>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1464 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 G+ C+NCG GH AR C+A + C++CG +GHI C Sbjct: 385 GTVTCWNCGKQGHTARQCRA-PRRQGCWKCGKTGHIMSKC 423
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRG 545 G +CFNC +GH + +C + C+ CG+ GH +C N P KP+ G Sbjct: 240 GPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN-PAKPREG 286 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDCQNSPKKPQRGKS 551 + CFNC GH + DC + CY C GH R+C +KP+ G++ Sbjct: 157 NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSREC-TEERKPREGRT 209
>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG +GHI C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHIMAKC 424
>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 G+ C+NCG GH AR C+A + C++CG +GHI C Sbjct: 385 GTVTCWNCGKQGHTARQCRA-PRRQGCWKCGKTGHIMSKC 423
>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 424
>POL_HV2CA (P24107) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 424
>GAG_EIAVY (P69732) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRG 545 P + C+NCG GH + C+A C++C GH + C++ PK ++G Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKNGKQG 425
>GAG_EIAVC (P69731) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRG 545 P + C+NCG GH + C+A C++C GH + C++ PK ++G Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKNGKQG 425
>GAG_EIAV9 (P69730) Gag polyprotein [Contains: Matrix protein p15; Capsid| protein p26 (CA) (Major core protein p26); Nucleocapsid protein p11; p9] Length = 486 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRG 545 P + C+NCG GH + C+A C++C GH + C++ PK ++G Sbjct: 376 PLKAAQTCYNCGKPGHLSSQCRA---PKVCFKCKQPGHFSKQCRSVPKNGKQG 425
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRG 545 G +CFNC +GH + +C + C+ CG+ GH +C N P KP+ G Sbjct: 451 GPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHRSNECPN-PAKPREG 497 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDCQNSPKKPQRGKS 551 + CFNC GH + DC + CY C GH RDC +KP+ G++ Sbjct: 370 NNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE-RKPREGRN 422 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +3 Query: 399 SGRCFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDCQNSPKKPQRGKS 551 + CFNC GH + DC + CY C GH RDC +KP+ G++ Sbjct: 256 NNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE-RKPREGRN 308
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 518 RC+NCG GH R C K +C +CG GH+ +DC+ Sbjct: 398 RCYNCGKFGHMQRQCPEPR-KTKCLKCGKLGHLAKDCR 434 Score = 29.6 bits (65), Expect = 6.4 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 471 RCYRCGDSGHIERDCQNSPK 530 RCY CG GH++R C K Sbjct: 398 RCYNCGKFGHMQRQCPEPRK 417
>GAG_HV2RO (P04590) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 521 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 424
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDPRDADEARY 254 G RL+V +P R R DL+ +F ++G V V++ F FV P+DA+ AR Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210 Query: 255 NLDGRDFDGSRMIVEFA 305 L G +G ++ V A Sbjct: 211 ELHGSMIEGRKIEVNCA 227
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG +GHI C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHIMAKC 424
>POL_HV2RO (P04584) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1463 Score = 43.9 bits (102), Expect = 3e-04 Identities = 17/37 (45%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 KCWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMTNC 424
>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein| p2A; Core protein p2B; Core protein p10; Capsid protein p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)] Length = 701 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +3 Query: 402 GRCFNCGIDGHWARDC----KAGDWKNRCYRCGDSGHIERDCQ----NSPKKPQRGKSYS 557 G C+ CG GH+ C K+G+ + RC C GH + C+ N ++P +G S Sbjct: 507 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRDGNQGQRPGKGLSSG 566 Query: 558 RSPSP 572 P P Sbjct: 567 PWPGP 571 Score = 30.4 bits (67), Expect = 3.8 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +3 Query: 456 GDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSR 560 G + CY CG GH + C PKK + G S R Sbjct: 503 GRARGLCYTCGSPGHYQAQC---PKKRKSGNSRER 534
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 43.5 bits (101), Expect = 4e-04 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGK 548 PP + CF CG GHW+RDC + C C D H +RDC + G+ Sbjct: 356 PPPTQPCFRCGKVGHWSRDCTQPRPPPGPCPLCQDPSHWKRDCPQLKPPQEEGE 409
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQ 518 +C+NCG GH R C K RC +CG GH+ +DC+ Sbjct: 403 KCYNCGKFGHMQRQCPEPR-KMRCLKCGKPGHLAKDCR 439 Score = 30.8 bits (68), Expect = 2.9 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +3 Query: 387 PPPGSGRCFNCGIDGHWARDCK 452 P P RC CG GH A+DC+ Sbjct: 418 PEPRKMRCLKCGKPGHLAKDCR 439
>GAG_SIVSP (P19504) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 43.5 bits (101), Expect = 4e-04 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + C++CG +GH+ C Sbjct: 393 KCWNCGKEGHSARQCRA-PRRQGCWKCGKAGHVMAKC 428
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 43.1 bits (100), Expect = 6e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYN 257 T++ + LP + +D+ LFG YG++R V + + F F +F R+A+ A Sbjct: 702 TKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDA 761 Query: 258 LDGRDFDGSRMIVEFA 305 L G R+++EFA Sbjct: 762 LKNTHLLGRRLVLEFA 777 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 ++RL+V LP DLE +F ++G++ + + + FA+V++ +P A +A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 252 YNLDGRDFDGSRM 290 LDG+ F G M Sbjct: 360 KELDGKHFQGRLM 372 Score = 32.7 bits (73), Expect = 0.76 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = +3 Query: 78 RDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDADEAR 251 + R GNT + V + DL LF YG++ + M A VEF+ P +A +A Sbjct: 477 KQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQKAF 536 Query: 252 YNLDGRDFDGSRMIVEFA 305 L R S + +E A Sbjct: 537 KGLAYRKVGDSILFLEKA 554
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 42.7 bits (99), Expect = 7e-04 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Frame = +3 Query: 21 AARVSSASLSQCRMPRYD--ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV-- 188 A R+ S S +P + + ++ G RLYVG L + +L ++F YG + + Sbjct: 253 AQRLRSISGPTHELPPIEVAQETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFS 312 Query: 189 DMKHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 305 +++ F F++ +A++A+ LDG G ++ V FA Sbjct: 313 NLEKNFTFLKVDYHINAEKAKRALDGSMRKGRQLRVRFA 351
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHV-------DMKHEFAFVEFSDPRDADEARYNL 260 +L++G L T + L+ +FG++G + V FAF+ F +P DA A ++ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 Query: 261 DGRDFDGSRMIVEFAK 308 +G+ G + VE AK Sbjct: 69 NGKSLHGKAIKVEQAK 84
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 42.7 bits (99), Expect = 7e-04 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKA------GDWK-NRCYRCGDSGHIERDCQNSPK 530 G+G C+ CG H CKA G++ +C+ CG+ GH+ R C ++PK Sbjct: 153 GTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPK 204 Score = 31.6 bits (70), Expect = 1.7 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWK-----NRCYRCGDSGHIERDCQNS 524 +CF CG GH +R C C CG H+++DC S Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPES 229 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNR------CYRCGDSGHIERDCQ 518 CF+C GH DC A +N+ CYRCG + H C+ Sbjct: 130 CFHCRKPGHGIADCPAA-LENQDMGTGICYRCGSTEHEITKCK 171
>GAG_SIVMK (P05893) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 42.7 bits (99), Expect = 7e-04 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR C+A + RC++CG H+ C Sbjct: 392 KCWNCGKEGHSARQCRA-PRRQRCWKCGKMDHVMAKC 427
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 515 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 474 CYRCGDSGHIERDCQNSPKKP 536 C+RCG +GH RDC P+ P Sbjct: 357 CFRCGKAGHWSRDC-TQPRPP 376
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 515 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 351 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 393 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 474 CYRCGDSGHIERDCQNSPKKP 536 C+RCG +GH RDC P+ P Sbjct: 357 CFRCGKAGHWSRDC-TQPRPP 376
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%) Frame = +3 Query: 63 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVE 218 P R + + R+YVG LP T LE LF +G+V R F FV Sbjct: 137 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 196 Query: 219 FSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 S + ++A LDG+ DG + V A+ Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226 Score = 35.4 bits (80), Expect = 0.12 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG LP + L +F G V R D F FV S +A++A Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 258 LDGRDFDGSRMIVEFA 305 L+G D DG ++ V A Sbjct: 116 LNGYDMDGRQLTVNKA 131
>GAG_SIVS4 (P12496) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 507 Score = 42.4 bits (98), Expect = 0.001 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH A+ C+A + C++CG +GH+ C Sbjct: 393 KCWNCGKEGHSAKQCRA-PRRQGCWKCGKTGHVMAKC 428
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Frame = +3 Query: 390 PPGSGRCFNCGIDGHWARDC-KAGDWKNRCYRCGDSGHIERDC 515 PP + CF CG GHW+RDC + C C D H +RDC Sbjct: 350 PPPNQPCFRCGKAGHWSRDCTQPRPPPGPCPLCQDPTHWKRDC 392 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 474 CYRCGDSGHIERDCQNSPKKP 536 C+RCG +GH RDC P+ P Sbjct: 356 CFRCGKAGHWSRDC-TQPRPP 375
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 96 NTRLYVGRLPSR-TRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 N+R+++G L + + D+E +F +YGRV + +AFV++S+ R A A +GR Sbjct: 20 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRV 79 Query: 273 FDGSRMIVEFA 305 G + + A Sbjct: 80 LAGQTLDINMA 90
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 42.0 bits (97), Expect = 0.001 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 7/96 (7%) Frame = +3 Query: 42 SLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF----- 206 S Q +P+ + + + ++ V LP +D+ +LF +G+++ V + +F Sbjct: 693 SHKQSSLPKTSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSAR 752 Query: 207 --AFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 AFVEF P +A+ A L G G R+++++A+ Sbjct: 753 GFAFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 257 RL++ + D + LF YG + V + + FA+V F DP A A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 258 LDGRDFDG 281 LD + F G Sbjct: 362 LDKQIFQG 369
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 22/62 (35%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAGDWKNR----------------------CYRCGDSGHIER 509 G CF CG GH AR+C G CY CG+SGH R Sbjct: 134 GDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFAR 193 Query: 510 DC 515 DC Sbjct: 194 DC 195 Score = 32.3 bits (72), Expect = 0.99 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 402 GRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYS 557 G + G G + G N C++CG+ GH+ R+C Q G YS Sbjct: 114 GGSYGGGYGGRGSGGRGGGGGDNSCFKCGEPGHMARECS------QGGGGYS 159 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKAG 458 G C++CG GH+ARDC +G Sbjct: 178 GGLSCYSCGESGHFARDCTSG 198
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 260 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 812 Query: 261 DGRDFDGSRMIVEFAK 308 G G R+++EF + Sbjct: 813 QGVHLLGRRLVMEFVE 828
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177 Query: 252 YNLDGRDFDGSRMIVEFA 305 +G + DG R+ V+++ Sbjct: 178 ERANGMELDGRRIRVDYS 195
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 96 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 N+R+++G L + + D+E +F +YG++ + FAFV+FS+ R A A DGR Sbjct: 16 NSRVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVHKGFAFVQFSNERTARTAVAGEDGRM 75 Query: 273 FDGSRMIVEFA 305 G + + A Sbjct: 76 IAGQVLDINLA 86
>GAG_SIVM1 (P05894) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 506 Score = 42.0 bits (97), Expect = 0.001 Identities = 16/39 (41%), Positives = 24/39 (61%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQN 521 +C+NCG +GH AR C+A + C++CG H+ C N Sbjct: 392 KCWNCGKEGHSARQCRA-PRRQGCWKCGKMDHVMAKCPN 429
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 42.0 bits (97), Expect = 0.001 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--KHEFAFVEFSDPRDA 239 +++G LPS +++E+ FG++G++ H+ + K AFV F + RDA Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEAR 251 NT L V L T RDL ++F RYG + V++ ++ FAFV F D+ EA Sbjct: 116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175 Query: 252 YNLDGRDFDGSRMIVEFA 305 +G + DG R+ V+++ Sbjct: 176 ERANGMELDGRRIRVDYS 193
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLF-GRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 257 LYVG LP R +DL DLF YG++ +K + FAF+EF + + + + Sbjct: 37 LYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKKVKEK 96 Query: 258 LDGRDFDGSRMIVE 299 ++G+ F ++++E Sbjct: 97 MNGKIFMNEKIVIE 110
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEA 248 + ++ G RLYVG L + +L ++F YG + + +++ F F++ +A++A Sbjct: 277 QETKFSGRNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEKNFTFLKVDYHINAEKA 336 Query: 249 RYNLDGRDFDGSRMIVEFA 305 + LDG G + V FA Sbjct: 337 KRPLDGSMRKGRHVRVRFA 355
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Frame = +3 Query: 84 RYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHV--DMKHEFAFVEFSDPRDADEARYN 257 ++ G RLYVG L + +L ++F YG + + ++ F F++ +A++A+ Sbjct: 297 KFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAEKAKRA 356 Query: 258 LDGRDFDGSRMIVEFA 305 LDG G ++ V FA Sbjct: 357 LDGSMRKGRQLRVRFA 372
>POL_HV2NZ (P05962) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1460 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSP-------KKPQRGKSYSRS 563 +C+NCG +GH AR A + C++CG SGH+ +C + + G R Sbjct: 387 KCWNCGKEGHSARQWSAPR-RQGCWKCGKSGHVMANCPDRQAGFLRDWPLGKEGPQLPRG 445 Query: 564 PSP 572 PSP Sbjct: 446 PSP 448
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +3 Query: 90 GGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEA 248 GG+T++ + LP RD+ DLF G+++ V + + F FVE+S R+A A Sbjct: 716 GGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSA 775 Query: 249 RYNLDGRDFDGSRMIVEFA 305 L G ++++++ Sbjct: 776 MEALKHTHLLGRHLVLQWS 794 Score = 30.4 bits (67), Expect = 3.8 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 257 RL++ LP ++ F +G V+ V + + AFV FSDP A A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 258 LDGRDFDG 281 DG F G Sbjct: 375 KDGSTFQG 382
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/55 (38%), Positives = 27/55 (49%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSP 572 CFNC GH AR C+ D K +C +CG GH+ C KK R+ +P Sbjct: 377 CFNCKRPGHLARQCR--DVK-KCNKCGKPGHLAAKCWQGGKKNSGNWKAGRAAAP 428
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 12/81 (14%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE------------FAFVEFSDPRDADE 245 R++VGRL + T+ ++ LF G VR V + AFV F++ D D+ Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104 Query: 246 ARYNLDGRDFDGSRMIVEFAK 308 A L+G+ D ++V+ A+ Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T+ DLE +F R+G++ ++ + +AF+EF +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309 Query: 261 DGRDFDGSRMIVEFAK 308 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 284 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 285 RMIVEFAK 308 + + FAK Sbjct: 400 NIEIVFAK 407
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 8/80 (10%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 248 G T L + L +T DL F RYG + V + + F FV F + RDA+ A Sbjct: 17 GLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHA 76 Query: 249 RYNLDGRDFDGSRMIVEFAK 308 DG+ DG + V AK Sbjct: 77 LDRTDGKLVDGRELRVTLAK 96
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 284 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 399 Query: 285 RMIVEFAK 308 + + FAK Sbjct: 400 NIEIVFAK 407
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/37 (45%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 R +NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 RYWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMANC 424
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 7/76 (9%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARYNL 260 ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A L Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQL 823 Query: 261 DGRDFDGSRMIVEFAK 308 G G R+++++A+ Sbjct: 824 HGVHLLGRRLVMQYAE 839
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/68 (27%), Positives = 36/68 (52%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFDGS 284 L+V L + LE F ++G++ V ++AF+ F + A +A ++G+D +G Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGE 309 Query: 285 RMIVEFAK 308 + + FAK Sbjct: 310 NIEIVFAK 317
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +3 Query: 396 GSGR-CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSP 572 GSG CFNC GH AR C+ D K +C +CG GH+ C K+ R+ +P Sbjct: 372 GSGPVCFNCKKPGHLARQCR--DVK-KCNKCGKPGHLAAKCWQGGKRNSGNWKAGRAAAP 428
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +3 Query: 396 GSGR-CFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPKKPQRGKSYSRSPSP 572 GSG CFNC GH AR C+ +C +CG GH+ C +K R+ +P Sbjct: 372 GSGPVCFNCKKPGHLARQCRE---VKKCNKCGKPGHLAAKCWQGNRKNSGNWKAGRAAAP 428
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 96 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 N+R+++G L + + D+E +F +YGRV + +AFV++++ R A A +GR Sbjct: 20 NSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARAAVLGENGRV 79 Query: 273 FDGSRMIVEFA 305 G + + A Sbjct: 80 LAGQTLDINMA 90
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/37 (45%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 R +NCG +GH AR C+A + C++CG GHI +C Sbjct: 389 RYWNCGKEGHSARQCRA-PRRQGCWKCGKPGHIMANC 424
>GAG_SIVMS (P31634) Gag polyprotein [Contains: Core protein p17; Core protein| p24] Length = 510 Score = 40.8 bits (94), Expect = 0.003 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH A+ CKA + C++CG GH C Sbjct: 392 KCWNCGKEGHTAKQCKA-PRRQGCWKCGKPGHQMAKC 427
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = +3 Query: 99 TRLYVGRLPSRTRTR-DLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 248 +RL++G LP + ++ DL +F YG + +++K+ F F++F +P+ +A Sbjct: 330 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDA 380
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 R+YVG LP LE LF +G+V R F FV SD + +EA Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 258 LDGRDFDGSRMIVEFAK 308 LDG++ +G + V A+ Sbjct: 305 LDGQNLEGRAIRVNVAE 321
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 40.4 bits (93), Expect = 0.004 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 10/197 (5%) Frame = +3 Query: 15 PPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 194 PP R S S+ R + R+ + + V L + T + +LF +YG + + M Sbjct: 69 PPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQM 128 Query: 195 --------KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAKXXXXXXXXXXXXXX 350 F F+ F DA A+ + G + DG R+ V+F+ Sbjct: 129 VIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLG 188 Query: 351 XXXXXXXXXXXXPPPGSGRCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDCQNSPK 530 P G R ++ + D++N Y +R+ + SP Sbjct: 189 RQPRGKAPRSFSPRRGR-RVYHDRSASPYDNYRDRYDYRNDRY--------DRNLRRSPS 239 Query: 531 KPQ--RGKSYSRSPSPR 575 + + R +SYSRS SP+ Sbjct: 240 RNRYTRNRSYSRSRSPQ 256
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%) Frame = +3 Query: 63 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 218 PR ++ + GG ++++G LPS DL F RYG+V V + ++ F F+ Sbjct: 84 PRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLS 143 Query: 219 FSDPRDAD----EARYNLDGRDFD 278 F + + E NL+G+ + Sbjct: 144 FEEESSVEHVTNERYINLNGKQVE 167
>GAG_HV2NZ (P05891) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 518 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 405 RCFNCGIDGHWARDCKAGDWKNRCYRCGDSGHIERDC 515 +C+NCG +GH AR A + C++CG SGH+ +C Sbjct: 387 KCWNCGKEGHSARQWSAPR-RQGCWKCGKSGHVMANC 422
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%) Frame = +3 Query: 45 LSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KH 200 +SQ R Y + D ++Y+ LP + +L +G + + Sbjct: 292 VSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSK 351 Query: 201 EFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFA 305 F F EF +P DA+ A LDG+D G+++ +FA Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LE +F +YG++ R F FV F + DA +A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 269 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 441 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 500 Query: 270 DFDGSRMIVEFAK 308 +R+ + F K Sbjct: 501 YLGNNRLKLGFGK 513 Score = 33.1 bits (74), Expect = 0.58 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 263 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH-----EFAFVEFSDPRDADEARYNLDGR 269 L++G L T DL ++F R+G + +D+K ++AF+++ D +A +DG Sbjct: 440 LFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGE 499 Query: 270 DFDGSRMIVEFAK 308 +R+ + F K Sbjct: 500 YLGNNRLKLGFGK 512 Score = 33.1 bits (74), Expect = 0.58 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARYNLD 263 L+VG LP R + + F RYGRV V + + AFV+F D + A +A +++ Sbjct: 8 LWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHNSVN 67
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Frame = +3 Query: 66 RYDERDRYGGNTR---LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFV 215 R ERD T+ +YV L T DL++ FG YG++ + + F FV Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 260 Query: 216 EFSDPRDADEARYNLDGRDFDGSRMIV 296 F + DA A +L+G FD V Sbjct: 261 NFENADDAARAVESLNGHKFDDKEWYV 287 Score = 34.3 bits (77), Expect = 0.26 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 8/65 (12%) Frame = +3 Query: 93 GNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEA 248 GNT LYVG L L D FG+ G V V + + + +V F++P+DA A Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93 Query: 249 RYNLD 263 L+ Sbjct: 94 IQELN 98
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 12/106 (11%) Frame = +3 Query: 27 RVSSASLSQCRMPRYDERDR----YGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM 194 +++ AS+ Q E++R RL++ L DL+ LFG +G++ V M Sbjct: 295 KIADASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHM 354 Query: 195 KHE--------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 + FA+++F D DA A LD + F G + V AK Sbjct: 355 PIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHEF-------AFVEFSDPRDADEARY 254 N ++ V LP +D+ +LF +G+++ V + +F AFVEF P++A+ A Sbjct: 737 NGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMD 796 Query: 255 NLDGRDFDGSRMIVEFAK 308 L G G R++++ A+ Sbjct: 797 QLQGVHLLGRRLVMQPAE 814 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYN 257 RL++ + + D + LF YG ++ V + + FA+V F+ P +A +A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 258 LDGRDFDG 281 LD + F G Sbjct: 386 LDKQIFQG 393
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 261 DGRDFDGSRMIVEFAK 308 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 40.0 bits (92), Expect = 0.005 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T DLE +F R+G +R ++ + +AF+EF D ++A + + Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301 Query: 261 DGRDFDGSRMIVEFAK 308 D D R+ V+F++ Sbjct: 302 DNVLIDDRRIHVDFSQ 317
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = +3 Query: 72 DERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSD 227 +E + + RL+V LP + DLE LF +YG + + + FAF+ F Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452 Query: 228 PRDADEARYNLDGRDFDGSRMIV 296 P A +A +DG+ F G + V Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHV 475 Score = 35.8 bits (81), Expect = 0.090 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMK-------HEFAFVEFSDPRDADEARYN 257 +RL V LP+ + LF +G + +K +F F+ F +A +A+ + Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61 Query: 258 LDGRDFDGSRMIVEFAK 308 + D SR+ VEF K Sbjct: 62 FNKSFIDTSRITVEFCK 78 Score = 34.3 bits (77), Expect = 0.26 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 11/103 (10%) Frame = +3 Query: 33 SSASLSQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--- 203 SSA + + +E + G T L++ L T L+++F + G V+ + + Sbjct: 709 SSAKMEEEEEEEEEEEESLPGCT-LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNK 767 Query: 204 --------FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 F FVE+ P A +A L G DG ++ V ++ Sbjct: 768 AGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE 810 Score = 32.3 bits (72), Expect = 0.99 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +3 Query: 99 TRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKH--EFAFVEFSDPRDADEARYNLDGRD 272 T + V LP+ T +L++ FGR+G + V + A VEF +P +A +A +L Sbjct: 587 TVILVKNLPAGTLAAELQETFGRFGSLGRVLLPEGGTTAIVEFLEPLEARKAFRHLAYSK 646 Query: 273 FDGSRMIVEFA 305 F + +E+A Sbjct: 647 FHHVPLYLEWA 657
>GAG_IPHA (P04023) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 572 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +3 Query: 408 CFNCGIDGHWARDCKAGDWKNR---CYRCGDSGHIERDC 515 CFNCG GH +DC+A + CYRCG H +C Sbjct: 449 CFNCGRMGHLKKDCQAPERTRESKLCYRCGKGYHRASEC 487 Score = 32.0 bits (71), Expect = 1.3 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 402 GRCFNCGIDGHWARDCKAGDWKNR--CYRCGDSGHIERDCQNSPKKPQRGK 548 G N G+ + + D NR C+ CG GH+++DCQ +P++ + K Sbjct: 423 GPLTNAGLAAAILQTHRYRDLSNRKACFNCGRMGHLKKDCQ-APERTRESK 472
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 R+YVG +P LE LF +G+V R F FV + + +A N Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290 Query: 258 LDGRDFDGSRMIVEFAK 308 LDG+ DG + V A+ Sbjct: 291 LDGQSLDGRTIRVNVAE 307
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T DLE +F R+G++ ++ + +AF+EF D + +EA + Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314 Query: 261 DGRDFDGSRMIVEFAK 308 D D R+ V+F++ Sbjct: 315 DSVLIDDRRIHVDFSQ 330
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68 Query: 258 LDGRDFDGSRMIVEFAK 308 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 96 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 273 FDGSRMIVEFA 305 G + + A Sbjct: 75 IAGQVLDINLA 85
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------FAFVEFSDPRDADEARY 254 N +Y LP T DL DLF G+V + +++++ A VE+ + DAD Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIE 409 Query: 255 NLDGRDFDGSRMIVEFAK 308 L+ ++ G + + +AK Sbjct: 410 RLNNYNYGGCDLDISYAK 427 Score = 32.3 bits (72), Expect = 0.99 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Frame = +3 Query: 69 YDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDM------KHEFAFVEFSDP 230 Y+E+ + ++VG L + DL + F + G+V D+ VEF++ Sbjct: 126 YEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNS 185 Query: 231 RDADEARYNLDGRDFDGSRMIV 296 D D A DG F ++ V Sbjct: 186 DDVDRAIRQYDGAFFMDRKIFV 207
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 39.3 bits (90), Expect = 0.008 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +3 Query: 96 NTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRD 272 N+R+++G L + + D+E +F +YG++ + FAFV++ + R+A A DGR Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRM 74 Query: 273 FDGSRMIVEFA 305 G + + A Sbjct: 75 IAGQVLDINLA 85
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 39.3 bits (90), Expect = 0.008 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Frame = +3 Query: 402 GRCFNCGIDGHWARDCKAGDWKN-------RCYRCGDSGHIERDC------QNSPKKPQR 542 G CF CG GH+A+DC+ KN C RC H +C Q +P P + Sbjct: 543 GGCFKCGKKGHFAKDCRDHSNKNPESKVPGLCPRCKRGKHWANECKSKTDSQGNPLPPHQ 602 Query: 543 GKSYSRSP 566 G P Sbjct: 603 GNGMRGQP 610
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 39.3 bits (90), Expect = 0.008 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 R+YVG +P LE +F +G+V R F FV S + EA N Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251 Query: 258 LDGRDFDGSRMIVEFAK 308 LDG+ DG + V A+ Sbjct: 252 LDGQTLDGRTIRVNAAE 268 Score = 32.3 bits (72), Expect = 0.99 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEA- 248 + +L+VG LP + L LF + G V R D F FV S +AD+A Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155 Query: 249 ----RYNLDGR 269 +Y+L+GR Sbjct: 156 ELYSQYDLNGR 166
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 38.9 bits (89), Expect = 0.011 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM-------KHEFAFVEFSDPRDADEARYNLD 263 LYV R R+L F +G + D+ FAFVE+ D RDA++A Y + Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68 Query: 264 GRDFD--GSRMIVEFAK 308 GR + G + VE+AK Sbjct: 69 GRRLERGGGVLRVEWAK 85
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 38.9 bits (89), Expect = 0.011 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T DLE +FGR+G++ ++ + +AF+E+ D + A + + Sbjct: 253 LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAYFKM 312 Query: 261 DGRDFDGSRMIVEFAK 308 G D R+ V+F++ Sbjct: 313 QGVLIDDRRIHVDFSQ 328
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 38.9 bits (89), Expect = 0.011 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L+VG L T + LED F +G + R F F+ F++P A +A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 258 LDGRDFDGSRMIVEFA 305 ++G DG ++ V+ A Sbjct: 67 MNGESLDGRQIRVDHA 82
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 38.9 bits (89), Expect = 0.011 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDM--------KHEFAFVEFSDPRDADEARYNL 260 L+V +L TR+ DLE +F R+G++ ++ ++AF+EF DA+ A + + Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323 Query: 261 DGRDFDGSRMIVEFAK 308 D R+ V+F++ Sbjct: 324 QNVLVDDRRIWVDFSQ 339
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 38.9 bits (89), Expect = 0.011 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +3 Query: 72 DERDRYGGNTRLYVGRLPSRT-RTRDLEDLFGRYGRVRHVDMKHEFAFVEFSDPRDADEA 248 ++ D + N+R+++G L + + D+E +F +YG++ + FAFV++ ++A A Sbjct: 7 NKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAA 66 Query: 249 RYNLDGR 269 DGR Sbjct: 67 VAGEDGR 73
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 38.9 bits (89), Expect = 0.011 Identities = 20/76 (26%), Positives = 42/76 (55%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T+ DL+ +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 261 DGRDFDGSRMIVEFAK 308 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 38.5 bits (88), Expect = 0.014 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 279 GSRMIVEFAK 308 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Frame = +3 Query: 63 PRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVE 218 P D+ + L+V R+ T L F YG ++ + M + +AF+E Sbjct: 91 PHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIE 150 Query: 219 FSDPRDADEARYNLDGRDFDGSRMIVE 299 + RD A + DG+ DG R++V+ Sbjct: 151 YEHERDMHSAYKHADGKKIDGRRVLVD 177
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 38.5 bits (88), Expect = 0.014 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Frame = +3 Query: 396 GSGRCFNCGIDGHWARDCKA------GDWK-NRCYRCGDSGHIERDCQNSPK 530 G+G C+ CG H C+A G++ +C+ CG+ GH+ R C ++ K Sbjct: 153 GTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNTK 204 Score = 31.2 bits (69), Expect = 2.2 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = +3 Query: 405 RCFNCGIDGHWARDCK---AGDWKN--RCYRCGDSGHIERDCQNS 524 +CF CG GH +R C G + + C CG H ++DC+ + Sbjct: 185 KCFVCGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCREN 229 Score = 30.4 bits (67), Expect = 3.8 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%) Frame = +3 Query: 408 CFNCGIDGHWARDCKA-----GDWKNRCYRCGDSGHIERDCQ 518 CF+C GH DC A CYRCG + H C+ Sbjct: 130 CFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCR 171
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.014 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 279 GSRMIVEFAK 308 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 38.5 bits (88), Expect = 0.014 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRY--GRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 LYV L T +E F G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 279 GSRMIVEFAK 308 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 38.5 bits (88), Expect = 0.014 Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDPRDADEARYNL 260 L+V +L T+ DL +F R+G + ++ + +AF+EF + +D ++A + + Sbjct: 250 LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309 Query: 261 DGRDFDGSRMIVEFAK 308 G D R+ V+F++ Sbjct: 310 QGVLIDDHRIHVDFSQ 325
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 38.5 bits (88), Expect = 0.014 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFG--RYGRVRHVDMKHEFAFVEFSDPRDADEARYNLDGRDFD 278 LYV L T +E F + G V V ++AFV FS+ DA EA L+G+ D Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLD 292 Query: 279 GSRMIVEFAK 308 GS + V AK Sbjct: 293 GSPIEVTLAK 302
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 38.5 bits (88), Expect = 0.014 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%) Frame = +3 Query: 75 ERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE--------FAFVEFSDP 230 ERD + L V L TR +L DLF R+G ++ V + + FAFV + D Sbjct: 197 ERD---DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDR 253 Query: 231 RDADEARYNLDGRDFDGSRMIVEFAK 308 A +AR LDG ++ + EF+K Sbjct: 254 DCAIKARDRLDGYGWNNLILRCEFSK 279
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 38.5 bits (88), Expect = 0.014 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 +L++G L T LE F +YGR+ R F FV F + DA +A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 258 LDGRDFDGSRMIVEFA 305 ++G+ DG ++ V+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 38.1 bits (87), Expect = 0.018 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%) Frame = +3 Query: 102 RLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYN 257 R +VG L T R LE F +YG V R F FV F D + +A Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68 Query: 258 LDGRDFDGSRMIVEFAK 308 ++G+D DG + V A+ Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 38.1 bits (87), Expect = 0.018 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Frame = +3 Query: 48 SQCRMPRYDERDRYGGNTRLYVGRLPSRTRTRDLEDLFGRYGRVRHVDMKHE-------- 203 + C P D + T L V LP +L+ LFG G + + + Sbjct: 23 NNCSSP-VDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 204 FAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 + FV + DP+DA++A L+G + V +A+ Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116 Score = 34.3 bits (77), Expect = 0.26 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 251 + LYV LP ++LE LF +YGR+ + + F+ F +A+EA Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 252 YNLDGRDFDGSR--MIVEFA 305 L+G+ G+ + V+FA Sbjct: 184 KGLNGQKPPGATEPITVKFA 203
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 38.1 bits (87), Expect = 0.018 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +3 Query: 9 LSPPAARVSSASLSQCRMPRYDERDRYGGNTRLYVGRL-PSRTRTRDLEDLFGRYGRVRH 185 L+ P+A ++A+ + +P GN+ L V L P R + L LFG YG V+ Sbjct: 335 LAIPSAAAAAAAAGRIAIPGLAG----AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQR 390 Query: 186 VDM---KHEFAFVEFSDPRDADEARYNLDGRDFDGSRMIVEFAK 308 V + K E A VE +D A A +L+G G + + +K Sbjct: 391 VKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 38.1 bits (87), Expect = 0.018 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Frame = +3 Query: 105 LYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEARYNL 260 ++VG +P L+D+F G V R + F E+ D A A NL Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 261 DGRDFDGSRMIVEFA 305 +GR+F G + V+ A Sbjct: 78 NGREFSGRALRVDNA 92
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 38.1 bits (87), Expect = 0.018 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Frame = +3 Query: 96 NTRLYVGRLPSRTRTRDLEDLFGRYGRV--------RHVDMKHEFAFVEFSDPRDADEAR 251 + LY+ LP +D+ED+F R+GR+ + + AF+ F +A+EA Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164 Query: 252 YNLDGRDFDGSR--MIVEFA 305 + +G GS + V+FA Sbjct: 165 TSFNGHKPPGSSEPITVKFA 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,125,705 Number of Sequences: 219361 Number of extensions: 1450709 Number of successful extensions: 5728 Number of sequences better than 10.0: 447 Number of HSP's better than 10.0 without gapping: 4709 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5364 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
