ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart19f05 |
|---|---|
| Clone Library Name | barley_pub |
>TRMB_ARATH (Q8GXB7) Probable tRNA (guanine-N(7)-)-methyltransferase (EC| 2.1.1.33) (tRNA(m7G46)-methyltransferase) Length = 251 Score = 125 bits (315), Expect = 7e-29 Identities = 69/121 (57%), Positives = 78/121 (64%), Gaps = 1/121 (0%) Frame = +2 Query: 230 LPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXXXXXXXXXPR 409 LPRKRFYRARAHSNPLSDSHFPIPISP VD S H+P++ + Sbjct: 16 LPRKRFYRARAHSNPLSDSHFPIPISPAHVDYSLHFPKF-----------VEADNKFIKK 64 Query: 410 IRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLAL-RASNPGQYDNISV 586 + FAD + LFPD LMIGMELR KVTEYVKER+LAL R S+ GQY+NISV Sbjct: 65 VEFADIGCGFGGLLISLATLFPDTLMIGMELRDKVTEYVKERILALRRTSSEGQYENISV 124 Query: 587 V 589 V Sbjct: 125 V 125
>TRMB_HUMAN (Q9UBP6) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) (Methyltransferase-like protein 1) Length = 276 Score = 89.0 bits (219), Expect = 9e-18 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Frame = +2 Query: 233 PRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXX---XXXXXXX 403 P+KR+YR RAHSNP++D P+ P+++D S+ YP +F Sbjct: 16 PQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQ 75 Query: 404 PRIRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLALRASNPGQYDNIS 583 ++ FAD SPLFPD L++G+E+R KV++YV++R+ ALRA+ G + NI+ Sbjct: 76 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIA 135
>TRMB_MOUSE (Q9Z120) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) (Methyltransferase-like protein 1) Length = 268 Score = 88.6 bits (218), Expect = 1e-17 Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 3/120 (2%) Frame = +2 Query: 233 PRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXX---XXXXXXX 403 P+KR+YR RAHSNP++D P+ P+++D S+ YP +F Sbjct: 10 PQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLIQNKSHDDPKDEKEKHSG 69 Query: 404 PRIRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLALRASNPGQYDNIS 583 ++ FAD SPLFPD L++G+E+R KV++YV++R+ ALRA+ G + NI+ Sbjct: 70 AQVEFADIGCGYGGLLVALSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQNIA 129
>TRM8_YEAST (Q12009) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 286 Score = 84.0 bits (206), Expect = 3e-16 Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Frame = +2 Query: 230 LPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXXXXXXXXXPR 409 LP+KR+YR RAHSNP SD P+SP D+D S+ YP Y + Sbjct: 47 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYY----------KNAENGQMTKK 96 Query: 410 IRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLALR---ASNPGQYDNI 580 + AD SP FP+ L++GME+R +VT YV++R++ALR AS G + NI Sbjct: 97 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-FQNI 155 Query: 581 SVV 589 +V+ Sbjct: 156 NVL 158
>TRMB_DROME (O77263) Probable tRNA (guanine-N(7)-)-methyltransferase (EC| 2.1.1.33) (tRNA(m7G46)-methyltransferase) Length = 256 Score = 80.1 bits (196), Expect = 4e-15 Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 2/120 (1%) Frame = +2 Query: 230 LPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXXXXXXXXXPR 409 LP+KR+YR RAHSNP++D F P P+DVD YP + Sbjct: 29 LPQKRYYRQRAHSNPIADHSFDYPARPEDVDWRSMYP----------------GIQQGQQ 72 Query: 410 IRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLAL--RASNPGQYDNIS 583 + FAD +FP+KL IGME+R KV++YV +R+ AL R ++ G Y NI+ Sbjct: 73 VSFADIGCGYGGFLVTLGEMFPEKLSIGMEIRVKVSDYVVDRIAALRRRCADTGAYQNIA 132
>TRMB_CAEEL (Q23126) Probable tRNA (guanine-N(7)-)-methyltransferase (EC| 2.1.1.33) (tRNA(m7G46)-methyltransferase) Length = 256 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 2/122 (1%) Frame = +2 Query: 230 LPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXXXXXXXXXPR 409 LP+K+ YR RAHSNP SD P++P+ +D +++Y Y + Sbjct: 24 LPQKKHYRQRAHSNPHSDHDIEYPLTPNHMDWTKYYGDY----------------TKGRQ 67 Query: 410 IRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLALRA--SNPGQYDNIS 583 + FAD SP +PD LMIGME+R KV++YV E++ ALR + G Y N++ Sbjct: 68 VDFADIGCGYGGLLMRLSPKYPDNLMIGMEIRVKVSDYVNEKIQALRKHHAEAGHYRNVA 127 Query: 584 VV 589 V+ Sbjct: 128 VL 129
>TRMB_SCHPO (Q96WV1) Probable tRNA (guanine-N(7)-)-methyltransferase (EC| 2.1.1.33) (tRNA(m7G46)-methyltransferase) Length = 273 Score = 73.9 bits (180), Expect = 3e-13 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 6/127 (4%) Frame = +2 Query: 227 KLPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYPRYFPXXXXXXXXXXXXXXXXXP 406 +LP KR +R RAH+N LSD P SP ++D S +YP + Sbjct: 35 RLPMKRLFRQRAHANVLSDHELEYPRSPSEMDWSPYYPDF--------------DVESNK 80 Query: 407 RIRFADXXXXXXXXXXXXSPLFPDKLMIGMELRGKVTEYVKERVLALR------ASNPGQ 568 ++ D P FPD L++GME+R +V++Y+KE++ ALR PG Sbjct: 81 KVEIVDIGCGYGGLTVALGPQFPDTLVLGMEIRMQVSDYLKEKIQALRYRADHEEPVPGG 140 Query: 569 YDNISVV 589 Y NISV+ Sbjct: 141 YKNISVL 147
>GSP2_YEAST (P32836) GTP-binding nuclear protein GSP2/CNR2| Length = 220 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = -2 Query: 562 WIGCS*SQNPLFDILSHLA---PQLHADHELVGEERREPDEQPTKPAPDVSEAD 410 W+ + NP + ++ A P++ D +L+ + ++E D+ P PD +AD Sbjct: 166 WLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDDAD 219
>Y093_MYCTU (Q10890) Hypothetical protein Rv0093c/MT0102| Length = 282 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 181 HLAKAARGSVGFPACFAGESKGVAPRR*AVREGADCELSRRS 56 H + +G G PA E G R A +G DCE++R + Sbjct: 14 HASTVLQGCRGVPAAMWSEPAGAIRRHCATIDGMDCEVAREA 55
>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)| Length = 1212 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +2 Query: 92 DGSSARRNPLRLP---GEAGGEPDAAPRGLGQMTR 187 DGSS R P R+P G G+P A G G +T+ Sbjct: 1148 DGSSQRPTPTRIPMSKGMKAGKPVVAASGAGNLTK 1182
>PUR1_SHIFL (P0AG17) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine| phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 504 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 227 KLPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYP 340 +L +K F R H N SDS + I ++D +HYP Sbjct: 109 ELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYP 146
>PUR1_ECOLI (P0AG16) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine| phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 504 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 227 KLPRKRFYRARAHSNPLSDSHFPIPISPDDVDLSQHYP 340 +L +K F R H N SDS + I ++D +HYP Sbjct: 109 ELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYP 146
>CDX2_MOUSE (P43241) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| Length = 311 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -2 Query: 472 EERREPDEQPTKPAPDVSEADPGRLRLSAPVPVT 371 +++++ +QP +P P S+ PG LR S P P++ Sbjct: 249 QQQQQQQQQPPQPPPQPSQPQPGALR-SVPEPLS 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,847,998 Number of Sequences: 219361 Number of extensions: 745726 Number of successful extensions: 3053 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2837 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3042 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
