ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart19f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
2dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
3dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
4gb|BC060332.1| Xenopus laevis hypothetical protein MGC68460, mRN... 42 2.0
5emb|Y00966.1|HVPSA2 Hordeum vulgare pot. psaE mRNA 42 2.0
6ref|XM_478374.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.0
7gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthre... 40 8.0
8gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 8.0
9gb|AC124532.4| Mus musculus BAC clone RP23-312P22 from chromosom... 40 8.0
10ref|XM_851964.1| PREDICTED: Canis familiaris similar to Cyclic-A... 40 8.0
11ref|XM_851838.1| PREDICTED: Canis familiaris similar to Cyclic-A... 40 8.0
12ref|XM_851800.1| PREDICTED: Canis familiaris similar to Cyclic-A... 40 8.0
13gb|AC073594.31| Homo sapiens 12 BAC RP11-972K6 (Roswell Park Can... 40 8.0
14gb|AC123870.3| Mus musculus BAC clone RP23-246A19 from 15, compl... 40 8.0
15emb|CR716051.2|CNS0GFGF Tetraodon nigroviridis full-length cDNA 40 8.0
16gb|AY181861.1| Suaeda monodiana specimen-voucher Schuetze1229 in... 40 8.0
17gb|AC135413.43| Medicago truncatula clone mth2-16n19, complete s... 40 8.0
18emb|AL133174.15| Human DNA sequence from clone RP3-470L14 on chr... 40 8.0
19gb|AF479035.1| Triticum aestivum proteinase inhibitor Rgpi9 mRNA... 40 8.0
20emb|AL136601.2|HSM801575 Homo sapiens mRNA; cDNA DKFZp564J1516 (... 40 8.0
21gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of... 40 8.0
22dbj|AK091405.1| Homo sapiens cDNA FLJ34086 fis, clone FCBBF30053... 40 8.0
23dbj|AK164412.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 8.0
24gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, comp... 40 8.0
25gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, compl... 40 8.0
26gb|AF249300.1|AF249300 Mycobacterium sp. PYR-1 aldehyde dehydrog... 40 8.0
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
28gb|AC022456.5|AC022456 Arabidopsis thaliana chromosome 1 BAC T4I... 40 8.0
29gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, comple... 40 8.0
30gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, co... 40 8.0
31gb|AC104417.14| Homo sapiens chromosome 8, clone RP11-953B20, co... 40 8.0
32gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 40 8.0
33gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (K... 40 8.0
34gb|AY546099.1| Homo sapiens staufen protein T4 variant mRNA, com... 40 8.0
35gb|AY529074.1| Homo sapiens staufen protein T5 variant mRNA, com... 40 8.0
36dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
37dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
38dbj|AB062093.1| Arabidopsis thaliana DNA, chromosome 1 centromer... 40 8.0
39dbj|AK025519.1| Homo sapiens cDNA: FLJ21866 fis, clone HEP02379,... 40 8.0
40emb|AJ338242.1|HSA338242 Homo sapiens genomic sequence surroundi... 40 8.0
41emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.0
42gb|AF061941.1|AF061941 Homo sapiens staufen protein (STAU) mRNA,... 40 8.0
43gb|AF061940.1|AF061940 Homo sapiens staufen protein (STAU) mRNA,... 40 8.0
44gb|AF061939.1|AF061939 Homo sapiens staufen protein (STAU) mRNA,... 40 8.0
45gb|AF061938.1|AF061938 Homo sapiens staufen protein (STAU) mRNA,... 40 8.0
46gb|BC095397.1| Homo sapiens staufen, RNA binding protein, homolo... 40 8.0
47gb|BC050432.1| Homo sapiens staufen, RNA binding protein, homolo... 40 8.0
48dbj|AB209561.1| Homo sapiens mRNA for staufen isoform b variant ... 40 8.0
49ref|NM_001037328.1| Homo sapiens staufen, RNA binding protein, h... 40 8.0
50ref|NM_017454.2| Homo sapiens staufen, RNA binding protein, homo... 40 8.0
51ref|NM_017453.2| Homo sapiens staufen, RNA binding protein, homo... 40 8.0
52ref|NM_017452.2| Homo sapiens staufen, RNA binding protein, homo... 40 8.0
53ref|NM_004602.2| Homo sapiens staufen, RNA binding protein, homo... 40 8.0
54emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chro... 40 8.0
55emb|AL606977.28| Mouse DNA sequence from clone RP23-284L6 on chr... 40 8.0 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  224 bits (113), Expect = 3e-55
 Identities = 125/129 (96%)
 Strand = Plus / Plus

                                                                           
Query: 223     ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 282
               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7129935 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 7129994

                                                                           
Query: 283     ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 342
               ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 7129995 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 7130054

                        
Query: 343     ctacttccc 351
                ||||||||
Sbjct: 7130055 gtacttccc 7130063



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                           
Query: 407     cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 466
               |||||||||||||| ||||| ||||| ||||| || |||||||||||||| |||||  ||
Sbjct: 7130107 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 7130166

                                                              
Query: 467     ctcttccccgacaagctcatgatcggcatggagctgaggggcaaggt 513
               |||||||| ||||  |||||||||||||||||||| |||| ||||||
Sbjct: 7130167 ctcttcccggacaccctcatgatcggcatggagctcagggacaaggt 7130213



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                           
Query: 510     aggtgactgagtatgtcaaagagagggttttggctttaagagcatccaatccaggacagt 569
               ||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||| |||
Sbjct: 7130608 aggtgactgagtatgtcaaagagcggattttggctttaagagcatcgaatccgggaaagt 7130667

                            
Query: 570     atgacaacatatc 582
               | |||||||||||
Sbjct: 7130668 acgacaacatatc 7130680
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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0080E19
          Length = 152755

 Score =  224 bits (113), Expect = 3e-55
 Identities = 125/129 (96%)
 Strand = Plus / Plus

                                                                          
Query: 223    ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 282
              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 150722 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 150781

                                                                          
Query: 283    ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 342
              ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 150782 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 150841

                       
Query: 343    ctacttccc 351
               ||||||||
Sbjct: 150842 gtacttccc 150850



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                          
Query: 407    cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 466
              |||||||||||||| ||||| ||||| ||||| || |||||||||||||| |||||  ||
Sbjct: 150894 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 150953

                                                             
Query: 467    ctcttccccgacaagctcatgatcggcatggagctgaggggcaaggt 513
              |||||||| ||||  |||||||||||||||||||| |||| ||||||
Sbjct: 150954 ctcttcccggacaccctcatgatcggcatggagctcagggacaaggt 151000



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                          
Query: 510    aggtgactgagtatgtcaaagagagggttttggctttaagagcatccaatccaggacagt 569
              ||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||| |||
Sbjct: 151395 aggtgactgagtatgtcaaagagcggattttggctttaagagcatcgaatccgggaaagt 151454

                           
Query: 570    atgacaacatatc 582
              | |||||||||||
Sbjct: 151455 acgacaacatatc 151467
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>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0068B06
          Length = 143712

 Score =  224 bits (113), Expect = 3e-55
 Identities = 125/129 (96%)
 Strand = Plus / Plus

                                                                        
Query: 223  ggggaagctcccgcggaagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcga 282
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7346 ggggaagctcccgcggaagcggttctaccgggcgcgcgcgcacagcaacccgctcagcga 7405

                                                                        
Query: 283  ctcgcacttcccgatcccgatatcgcccgacgacgtcgacctctcgcagcactacccgcg 342
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 7406 ctcgcacttcccgatcccgatatcgcccgacgaggtagacctctcgcagcactacccgcg 7465

                     
Query: 343  ctacttccc 351
             ||||||||
Sbjct: 7466 gtacttccc 7474



 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                        
Query: 407  cggatccgcttcgctgacgtcgggtgcgggtttggtgggctgctcgtcgggctctcgccg 466
            |||||||||||||| ||||| ||||| ||||| || |||||||||||||| |||||  ||
Sbjct: 7518 cggatccgcttcgcggacgttgggtgtgggttcggcgggctgctcgtcggcctctctacg 7577

                                                           
Query: 467  ctcttccccgacaagctcatgatcggcatggagctgaggggcaaggt 513
            |||||||| ||||  |||||||||||||||||||| |||| ||||||
Sbjct: 7578 ctcttcccggacaccctcatgatcggcatggagctcagggacaaggt 7624



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                        
Query: 510  aggtgactgagtatgtcaaagagagggttttggctttaagagcatccaatccaggacagt 569
            ||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||| |||
Sbjct: 8019 aggtgactgagtatgtcaaagagcggattttggctttaagagcatcgaatccgggaaagt 8078

                         
Query: 570  atgacaacatatc 582
            | |||||||||||
Sbjct: 8079 acgacaacatatc 8091
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>gb|BC060332.1| Xenopus laevis hypothetical protein MGC68460, mRNA (cDNA clone
            MGC:68460 IMAGE:3398023), complete cds
          Length = 3656

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 552  catccaatccaggacagtatgacaa 576
            |||||| ||||||||||||||||||
Sbjct: 3037 catccattccaggacagtatgacaa 3013
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>emb|Y00966.1|HVPSA2 Hordeum vulgare pot. psaE mRNA
          Length = 610

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 189 ccagcggcgccaacggcggcg 209
           |||||||||||||||||||||
Sbjct: 97  ccagcggcgccaacggcggcg 117
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>ref|XM_478374.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 420

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 191 agcggcgccaacggcggcgggcag 214
           ||||||| ||||||||||||||||
Sbjct: 258 agcggcggcaacggcggcgggcag 235
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>gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthree degradation pathway
             gene cluster, complete sequence
          Length = 37237

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   cgacgacgtcgacctctcgc 329
             ||||||||||||||||||||
Sbjct: 21056 cgacgacgtcgacctctcgc 21075
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    aggaccagcggcgccaacggcggc 208
              |||||||||||||||| |||||||
Sbjct: 854036 aggaccagcggcgccagcggcggc 854059
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>gb|AC124532.4| Mus musculus BAC clone RP23-312P22 from chromosome 15, complete sequence
          Length = 218337

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    ggacgggggcgctgaggcgg 398
              ||||||||||||||||||||
Sbjct: 206833 ggacgggggcgctgaggcgg 206852
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>ref|XM_851964.1| PREDICTED: Canis familiaris similar to Cyclic-AMP-dependent
           transcription factor ATF-7 (Activating transcription
           factor 7) (Transcription factor ATF-A), transcript
           variant 5 (LOC607149), mRNA
          Length = 1968

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 ggacgggggcgctgaggcgg 398
           ||||||||||||||||||||
Sbjct: 192 ggacgggggcgctgaggcgg 211
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>ref|XM_851838.1| PREDICTED: Canis familiaris similar to Cyclic-AMP-dependent
           transcription factor ATF-7 (Activating transcription
           factor 7) (Transcription factor ATF-A), transcript
           variant 3 (LOC607149), mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 ggacgggggcgctgaggcgg 398
           ||||||||||||||||||||
Sbjct: 192 ggacgggggcgctgaggcgg 211
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>ref|XM_851800.1| PREDICTED: Canis familiaris similar to Cyclic-AMP-dependent
           transcription factor ATF-7 (Activating transcription
           factor 7) (Transcription factor ATF-A), transcript
           variant 2 (LOC607149), mRNA
          Length = 1983

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 ggacgggggcgctgaggcgg 398
           ||||||||||||||||||||
Sbjct: 192 ggacgggggcgctgaggcgg 211
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>gb|AC073594.31| Homo sapiens 12 BAC RP11-972K6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 81410

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 379  ggacgggggcgctgaggcgg 398
            ||||||||||||||||||||
Sbjct: 5417 ggacgggggcgctgaggcgg 5398
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>gb|AC123870.3| Mus musculus BAC clone RP23-246A19 from 15, complete sequence
          Length = 223132

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   ggacgggggcgctgaggcgg 398
             ||||||||||||||||||||
Sbjct: 94781 ggacgggggcgctgaggcgg 94800
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>emb|CR716051.2|CNS0GFGF Tetraodon nigroviridis full-length cDNA
          Length = 472

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 57  ctccggcggctcagctcgcagtcc 80
           |||| |||||||||||||||||||
Sbjct: 114 ctcccgcggctcagctcgcagtcc 91
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>gb|AY181861.1| Suaeda monodiana specimen-voucher Schuetze1229 internal
          transcribed spacer 1, 5.8S ribosomal RNA gene, and
          internal transcribed spacer 2, complete sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 5  gactcgtcgctccctgacctttcc 28
          ||||||||||||| ||||||||||
Sbjct: 67 gactcgtcgctccgtgacctttcc 90
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>gb|AC135413.43| Medicago truncatula clone mth2-16n19, complete sequence
          Length = 92216

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 239   aagcgcttctaccgggcgcgcgcgcacagcaacccgctcagcgactcgcacttccc 294
             ||||||||||| || || || || ||||||||||| ||||| ||||| || |||||
Sbjct: 41597 aagcgcttctatcgagcacgagcacacagcaaccctctcagtgactctcatttccc 41542
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>emb|AL133174.15| Human DNA sequence from clone RP3-470L14 on chromosome 20 Contains the
             CSE1L gene for chromosome segregation 1 (yeast
             homolog)-like protein, the STAU gene for staufen
             RNA-binding protein (Drosophila), ARPC3 (actin related
             protein 2/3 complex,subunit 3, 21KDa) pseudogene and a CpG
             island, complete sequence
          Length = 113836

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   gtgcgggtttggtgggctgc 449
             ||||||||||||||||||||
Sbjct: 40071 gtgcgggtttggtgggctgc 40090
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>gb|AF479035.1| Triticum aestivum proteinase inhibitor Rgpi9 mRNA, partial cds
          Length = 273

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 274 gctcagcgactcgcacttcc 293
           ||||||||||||||||||||
Sbjct: 147 gctcagcgactcgcacttcc 128
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>emb|AL136601.2|HSM801575 Homo sapiens mRNA; cDNA DKFZp564J1516 (from clone DKFZp564J1516)
          Length = 2878

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1204 gtgcgggtttggtgggctgc 1185
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>gb|AE005901.1| Caulobacter crescentus CB15 section 227 of 359 of the complete genome
          Length = 11136

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  cccgcgcggccttggccaga 179
            ||||||||||||||||||||
Sbjct: 4569 cccgcgcggccttggccaga 4550
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>dbj|AK091405.1| Homo sapiens cDNA FLJ34086 fis, clone FCBBF3005320, highly similar
           to Homo sapiens staufen protein (STAU) mRNA
          Length = 2875

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 430 gtgcgggtttggtgggctgc 449
           ||||||||||||||||||||
Sbjct: 700 gtgcgggtttggtgggctgc 681
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>dbj|AK164412.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230013F04 product:activating
           transcription factor 7, full insert sequence
          Length = 2673

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 379 ggacgggggcgctgaggcgg 398
           ||||||||||||||||||||
Sbjct: 209 ggacgggggcgctgaggcgg 228
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>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence
          Length = 104776

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   ggggcgctgaggcggaggcg 403
             ||||||||||||||||||||
Sbjct: 27558 ggggcgctgaggcggaggcg 27577
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>gb|AC010269.6| Homo sapiens chromosome 5 clone CTC-485I21, complete sequence
          Length = 187084

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   ggggcgctgaggcggaggcg 403
             ||||||||||||||||||||
Sbjct: 46092 ggggcgctgaggcggaggcg 46073
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>gb|AF249300.1|AF249300 Mycobacterium sp. PYR-1 aldehyde dehydrogenase gene, complete cds
          Length = 1461

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgacgacgtcgacctctcgc 329
           ||||||||||||||||||||
Sbjct: 762 cgacgacgtcgacctctcgc 781
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 191      agcggcgccaacggcggcgggcag 214
                ||||||| ||||||||||||||||
Sbjct: 19595439 agcggcggcaacggcggcgggcag 19595462
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>gb|AC022456.5|AC022456 Arabidopsis thaliana chromosome 1 BAC T4I21 genomic sequence, complete
             sequence
          Length = 91413

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   agagagggttttggctttaa 548
             ||||||||||||||||||||
Sbjct: 54819 agagagggttttggctttaa 54800
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>gb|AC109638.2| Homo sapiens BAC clone RP11-495B16 from 2, complete sequence
          Length = 104787

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tccctgacctttcccctcca 34
             ||||||||||||||||||||
Sbjct: 29168 tccctgacctttcccctcca 29149
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>gb|AC087384.13| Homo sapiens chromosome 8, clone RP11-689G24, complete sequence
          Length = 110281

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    gctccctgacctttcccctccaac 36
             |||||||||||||||| |||||||
Sbjct: 88395 gctccctgacctttcctctccaac 88372
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>gb|AC104417.14| Homo sapiens chromosome 8, clone RP11-953B20, complete sequence
          Length = 186063

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 13   gctccctgacctttcccctccaac 36
            |||||||||||||||| |||||||
Sbjct: 1203 gctccctgacctttcctctccaac 1180
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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   tatgtcaaagagagggtttt 540
             ||||||||||||||||||||
Sbjct: 91578 tatgtcaaagagagggtttt 91597
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>gb|DQ317418.1| Panicum miliaceum KNOTTED1 homeodomain protein (KN1) mRNA, partial
           cds
          Length = 1002

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 190 cagcggcgccaacggcggcg 209
           ||||||||||||||||||||
Sbjct: 156 cagcggcgccaacggcggcg 175
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>gb|AY546099.1| Homo sapiens staufen protein T4 variant mRNA, complete cds;
            alternatively spliced
          Length = 3286

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1233 gtgcgggtttggtgggctgc 1214
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>gb|AY529074.1| Homo sapiens staufen protein T5 variant mRNA, complete cds;
            alternatively spliced
          Length = 3110

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1057 gtgcgggtttggtgggctgc 1038
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 191    agcggcgccaacggcggcgggcag 214
              ||||||| ||||||||||||||||
Sbjct: 138783 agcggcggcaacggcggcgggcag 138806
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 191   agcggcgccaacggcggcgggcag 214
             ||||||| ||||||||||||||||
Sbjct: 34089 agcggcggcaacggcggcgggcag 34112
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>dbj|AB062093.1| Arabidopsis thaliana DNA, chromosome 1 centromere region, BAC
             clone:T4M7
          Length = 83530

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   agagagggttttggctttaa 548
             ||||||||||||||||||||
Sbjct: 42386 agagagggttttggctttaa 42367
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>dbj|AK025519.1| Homo sapiens cDNA: FLJ21866 fis, clone HEP02379, highly similar to
            AF061938 Homo sapiens staufen protein (STAU) mRNA
          Length = 3194

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1183 gtgcgggtttggtgggctgc 1164
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>emb|AJ338242.1|HSA338242 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-PK18RS
          Length = 761

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 371 ggtgacggggacgggggcgc 390
           ||||||||||||||||||||
Sbjct: 202 ggtgacggggacgggggcgc 221
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 192   gcggcgccaacggcggcgggcagc 215
             ||||||||||||||||||| ||||
Sbjct: 51312 gcggcgccaacggcggcggacagc 51289
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>gb|AF061941.1|AF061941 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced,
            complete cds
          Length = 3349

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1347 gtgcgggtttggtgggctgc 1328
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>gb|AF061940.1|AF061940 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced,
            complete cds
          Length = 3142

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1140 gtgcgggtttggtgggctgc 1121
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>gb|AF061939.1|AF061939 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced,
            complete cds
          Length = 3506

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1504 gtgcgggtttggtgggctgc 1485
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>gb|AF061938.1|AF061938 Homo sapiens staufen protein (STAU) mRNA, alternatively spliced,
            complete cds
          Length = 3217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1215 gtgcgggtttggtgggctgc 1196
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>gb|BC095397.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila),
            mRNA (cDNA clone MGC:110867 IMAGE:30528051), complete cds
          Length = 3217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1193 gtgcgggtttggtgggctgc 1174
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>gb|BC050432.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila),
            transcript variant T3, mRNA (cDNA clone MGC:54160
            IMAGE:6047265), complete cds
          Length = 3253

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1248 gtgcgggtttggtgggctgc 1229
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>dbj|AB209561.1| Homo sapiens mRNA for staufen isoform b variant protein
          Length = 2259

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1375 gtgcgggtttggtgggctgc 1356
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>ref|NM_001037328.1| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila)
            (STAU1), transcript variant T5, mRNA
          Length = 3540

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1359 gtgcgggtttggtgggctgc 1340
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>ref|NM_017454.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila)
            (STAU1), transcript variant T1, mRNA
          Length = 3324

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1143 gtgcgggtttggtgggctgc 1124
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>ref|NM_017453.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila)
            (STAU1), transcript variant T3, mRNA
          Length = 3688

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1507 gtgcgggtttggtgggctgc 1488
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>ref|NM_017452.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila)
            (STAU1), transcript variant T2, mRNA
          Length = 3399

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1218 gtgcgggtttggtgggctgc 1199
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>ref|NM_004602.2| Homo sapiens staufen, RNA binding protein, homolog 1 (Drosophila)
            (STAU1), transcript variant T4, mRNA
          Length = 3522

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 430  gtgcgggtttggtgggctgc 449
            ||||||||||||||||||||
Sbjct: 1341 gtgcgggtttggtgggctgc 1322
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>emb|AL663072.12| Mouse DNA sequence from clone RP23-22J3 on chromosome X, complete
              sequence
          Length = 249536

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 538    tttggctttaagagcatcca 557
              ||||||||||||||||||||
Sbjct: 245728 tttggctttaagagcatcca 245709
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>emb|AL606977.28| Mouse DNA sequence from clone RP23-284L6 on chromosome 4, complete
             sequence
          Length = 199429

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 491   ggcatggagctgaggggcaa 510
             ||||||||||||||||||||
Sbjct: 84647 ggcatggagctgaggggcaa 84628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,110,665
Number of Sequences: 3902068
Number of extensions: 3110665
Number of successful extensions: 61984
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61680
Number of HSP's gapped (non-prelim): 304
length of query: 590
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 567
effective length of database: 17,143,297,704
effective search space: 9720249798168
effective search space used: 9720249798168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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