ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19e05 |
|---|---|
| Clone Library Name | barley_pub |
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 105 bits (263), Expect = 8e-23 Identities = 50/74 (67%), Positives = 56/74 (75%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAXXXXXXXXXXXXDDGRT 274 R KGTVKWF+D KGFGFI+PDDG EDLFVHQS I+++GFRSLA DGRT Sbjct: 8 RAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRT 67 Query: 275 KAVDVTGPDGSFVQ 316 KAVDVTGPDG+ VQ Sbjct: 68 KAVDVTGPDGAAVQ 81 Score = 35.8 bits (81), Expect = 0.097 Identities = 13/15 (86%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CFKCGE GH ARDCS Sbjct: 159 CFKCGESGHFARDCS 173 Score = 32.0 bits (71), Expect = 1.4 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 C+KCGE GH AR+C+ Sbjct: 196 CYKCGEDGHFARECT 210
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 93.2 bits (230), Expect = 5e-19 Identities = 43/74 (58%), Positives = 54/74 (72%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAXXXXXXXXXXXXDDGRT 274 R KGTVKWF+ KGFGFI+P DG +DLFVHQSSI+++GFRSLA + GR Sbjct: 14 RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73 Query: 275 KAVDVTGPDGSFVQ 316 KA++V+GPDG+ VQ Sbjct: 74 KAIEVSGPDGAPVQ 87 Score = 39.3 bits (90), Expect = 0.009 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CFKCGEPGHMAR+CS Sbjct: 138 CFKCGEPGHMARECS 152 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 C+ CGE GH ARDC+ Sbjct: 182 CYSCGESGHFARDCT 196
>CSPE_BUCAP (P63238) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.9 bits (167), Expect = 1e-11 Identities = 27/44 (61%), Positives = 42/44 (95%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+++GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLA 44
>CSPE_BUCAI (P63237) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.9 bits (167), Expect = 1e-11 Identities = 27/44 (61%), Positives = 42/44 (95%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+++GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLA 44
>CSPE_SHIFL (P0A975) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/44 (61%), Positives = 41/44 (93%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+ +GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLA 44
>CSPE_ECOLI (P0A972) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/44 (61%), Positives = 41/44 (93%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+ +GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLA 44
>CSPE_ECOL6 (P0A973) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/44 (61%), Positives = 41/44 (93%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+ +GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLA 44
>CSPE_ECO57 (P0A974) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 68.6 bits (166), Expect = 1e-11 Identities = 27/44 (61%), Positives = 41/44 (93%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+ +GF++LA Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLA 44
>CSPC_BUCAI (P57407) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 68.2 bits (165), Expect = 2e-11 Identities = 28/43 (65%), Positives = 39/43 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 A++KG VKWFN++KGFGFI+P DGS+D+FVH SSI+ +GF++L Sbjct: 1 AKIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTL 43
>CAPA_PSEFR (P72188) Cold shock protein capA (Cold acclimation protein A)| (C7.0) (Fragment) Length = 64 Score = 68.2 bits (165), Expect = 2e-11 Identities = 29/45 (64%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M R GTVKWFND KGFGFI+P G +DLFVH +I++DGF+SL Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSL 45
>CSPE_BUCBP (Q89A90) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 26/44 (59%), Positives = 42/44 (95%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 +++KG VKWFN++KGFGFI+P+DGS+D+FVH S+I+++GF++L+ Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLS 44
>CSPC_SALTY (P0A9Y9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 28/44 (63%), Positives = 40/44 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +GF++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLA 44
>CSPC_SALTI (P0A9Z0) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 28/44 (63%), Positives = 40/44 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +GF++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLA 44
>CSPC_ECOLI (P0A9Y6) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 28/44 (63%), Positives = 40/44 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +GF++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLA 44
>CSPC_ECOL6 (P0A9Y7) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 28/44 (63%), Positives = 40/44 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +GF++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLA 44
>CSPC_ECO57 (P0A9Y8) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 67.8 bits (164), Expect = 2e-11 Identities = 28/44 (63%), Positives = 40/44 (90%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +GF++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLA 44
>CSPA_VIBCH (Q9KN00) Cold shock-like protein cspA| Length = 70 Score = 66.6 bits (161), Expect = 5e-11 Identities = 28/46 (60%), Positives = 38/46 (82%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 M +M G+VKWFN+TKGFGFIS D+G +D+FVH SI ++GF++LA Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLA 46
>CSPV_VIBCH (Q9KL16) Cold shock protein cspV| Length = 70 Score = 65.9 bits (159), Expect = 9e-11 Identities = 26/46 (56%), Positives = 39/46 (84%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 M +M G+VKWFN+TKGFGF++ D+G D+FVH +SI+++GF++LA Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLA 46
>CSPA_SHIFL (P0A9Y4) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_SALTY (P0A9Y2) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_SALTI (P0A9Y3) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_SALEN (P0A9Y5) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_ECOLI (P0A9X9) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_ECOL6 (P0A9Y0) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPA_ECO57 (P0A9Y1) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 65.9 bits (159), Expect = 9e-11 Identities = 28/42 (66%), Positives = 36/42 (85%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +M G VKWFN KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSL 44
>CSPC_SHIFL (Q83RI9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 65.5 bits (158), Expect = 1e-10 Identities = 27/44 (61%), Positives = 39/44 (88%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 A++KG VKWFN++KGFGFI+P DGS+D+FVH S+I+ +G ++LA Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLA 44
>CSPD_SHIFL (P0A971) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 64.3 bits (155), Expect = 3e-10 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGTVKWFN+ KGFGFI P+ G ED+F H S+I+ DG+R+L Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTL 42
>CSPD_ECOLI (P0A968) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 64.3 bits (155), Expect = 3e-10 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGTVKWFN+ KGFGFI P+ G ED+F H S+I+ DG+R+L Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTL 42
>CSPD_ECOL6 (P0A969) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 64.3 bits (155), Expect = 3e-10 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGTVKWFN+ KGFGFI P+ G ED+F H S+I+ DG+R+L Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTL 42
>CSPD_ECO57 (P0A970) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 64.3 bits (155), Expect = 3e-10 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGTVKWFN+ KGFGFI P+ G ED+F H S+I+ DG+R+L Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTL 42
>CSPA_RHIME (Q9Z3S6) Cold shock protein cspA| Length = 69 Score = 64.3 bits (155), Expect = 3e-10 Identities = 27/39 (69%), Positives = 32/39 (82%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN TKGFGFI PDDG+ D+FVH S+++ G RSL Sbjct: 4 GTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSL 42
>CSPA_STIAU (P72366) Cold shock-like protein cspA| Length = 68 Score = 63.9 bits (154), Expect = 3e-10 Identities = 27/39 (69%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFND KGFGFI+ D G ED+F H S+I DGFR+L Sbjct: 4 GTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMDGFRTL 42
>CSPG_SHIFL (P0A981) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 63.2 bits (152), Expect = 6e-10 Identities = 27/45 (60%), Positives = 37/45 (82%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+PDDGS+D+FVH ++I+++ FR+L Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTL 45
>CSPG_ECOLI (P0A978) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 63.2 bits (152), Expect = 6e-10 Identities = 27/45 (60%), Positives = 37/45 (82%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+PDDGS+D+FVH ++I+++ FR+L Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTL 45
>CSPG_ECOL6 (P0A979) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 63.2 bits (152), Expect = 6e-10 Identities = 27/45 (60%), Positives = 37/45 (82%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+PDDGS+D+FVH ++I+++ FR+L Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTL 45
>CSPG_ECO57 (P0A980) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 63.2 bits (152), Expect = 6e-10 Identities = 27/45 (60%), Positives = 37/45 (82%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+PDDGS+D+FVH ++I+++ FR+L Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTL 45
>CAPB_PSESM (P0A105) Cold shock protein capB (Cold acclimation protein B)| Length = 69 Score = 63.2 bits (152), Expect = 6e-10 Identities = 29/45 (64%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M R GTVKWFND KGFGFI+P G +DLFVH +I++DGF+SL Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSL 44
>CAPB_PSEFR (P0A106) Cold shock protein capB (Cold acclimation protein B)| (C8.0) Length = 69 Score = 63.2 bits (152), Expect = 6e-10 Identities = 29/45 (64%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M R GTVKWFND KGFGFI+P G +DLFVH +I++DGF+SL Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSL 44
>Y4CH_RHISN (P55390) Probable cold shock protein y4cH| Length = 69 Score = 62.4 bits (150), Expect = 1e-09 Identities = 27/39 (69%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN TKGFGFI PDDGS D+FVH S+++ G R L Sbjct: 5 GTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLREL 43
>CSPB_ECOLI (P36995) Cold shock-like protein cspB (CSP-B)| Length = 71 Score = 62.4 bits (150), Expect = 1e-09 Identities = 28/45 (62%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFISP DGS+D+FVH S+I+ D +R+L Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTL 45
>CSPA_MYCTU (P63848) Probable cold shock protein A| Length = 67 Score = 62.4 bits (150), Expect = 1e-09 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFI+P+DGS D+FVH + I+ GFR+L Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTL 42
>CSPA_MYCBO (P63849) Probable cold shock protein A| Length = 67 Score = 62.4 bits (150), Expect = 1e-09 Identities = 26/40 (65%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFI+P+DGS D+FVH + I+ GFR+L Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTL 42
>CSPA_PSEAE (P95459) Major cold shock protein cspA| Length = 69 Score = 62.0 bits (149), Expect = 1e-09 Identities = 29/45 (64%), Positives = 34/45 (75%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M R GTVKWFND KGFGFI+P+ G+ DLFVH SI+ GF+SL Sbjct: 1 MSNRQNGTVKWFNDAKGFGFITPESGN-DLFVHFRSIQGTGFKSL 44
>CSPI_ECOLI (P0A986) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/45 (57%), Positives = 36/45 (80%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+P DGS+D+FVH S+I+++ F++L Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTL 45
>CSPI_ECOL6 (P0A987) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/45 (57%), Positives = 36/45 (80%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWFN KGFGFI+P DGS+D+FVH S+I+++ F++L Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTL 45
>TAPB_PSEFR (P72192) Temperature acclimation protein B (E8.0) (Fragment)| Length = 63 Score = 60.8 bits (146), Expect = 3e-09 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M R GTVKWFND KGFGFI+P+ G DLFVH +I+ +GF+SL Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSL 44
>CSPJ_SALTY (P39818) Cold shock-like protein cspJ| Length = 70 Score = 60.8 bits (146), Expect = 3e-09 Identities = 26/45 (57%), Positives = 36/45 (80%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M ++ G VKWFN KGFGFI+P DGS+D+FVH S+I+++ FR+L Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTL 45
>CSPJ_SALTI (P58726) Cold shock-like protein cspJ| Length = 70 Score = 60.8 bits (146), Expect = 3e-09 Identities = 26/45 (57%), Positives = 36/45 (80%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M ++ G VKWFN KGFGFI+P DGS+D+FVH S+I+++ FR+L Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTL 45
>CSPG_SHEVI (Q9S170) Cold shock-like protein cspG| Length = 70 Score = 60.1 bits (144), Expect = 5e-09 Identities = 25/40 (62%), Positives = 33/40 (82%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 G VKWFN+ KGFGFI+ D+G +D+FVH SI +DGF++LA Sbjct: 7 GLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLA 46
>CSP7_STRCL (Q01761) Cold shock-like protein 7.0| Length = 66 Score = 60.1 bits (144), Expect = 5e-09 Identities = 27/39 (69%), Positives = 30/39 (76%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KGFGFI+ D G D+FVH S+I A GFRSL Sbjct: 4 GTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSL 42
>CSP_ARTGO (P54584) Cold shock protein| Length = 67 Score = 59.7 bits (143), Expect = 6e-09 Identities = 25/40 (62%), Positives = 31/40 (77%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFI+PDD D+FVH S I+ GF++L Sbjct: 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTL 42
>CSPA_MICLU (O30875) Major cold shock protein| Length = 67 Score = 58.5 bits (140), Expect = 1e-08 Identities = 24/39 (61%), Positives = 32/39 (82%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KG+GFI+P+D S D+FVH S+I+ +GF+ L Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKEL 42
>YBOXH_APLCA (P41824) Y-box factor homolog (APY1)| Length = 253 Score = 58.2 bits (139), Expect = 2e-08 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Frame = +2 Query: 92 ARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXX 259 +++ GTVKWFN G+GFI+ DD ED+FVHQ++I + RS+ Sbjct: 31 SQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEG 90 Query: 260 DDGRTKAVDVTGPDGSFVQ 316 + G +A +VTGP+GS VQ Sbjct: 91 EKG-NEAANVTGPEGSNVQ 108
>CSPB_YERPE (P0A362) Cold shock-like protein cspB| Length = 70 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/45 (55%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWF+ KGFGFISP DGS+D+FVH S+I+ + +++L Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTL 45
>CSPB_YEREN (P0A363) Cold shock-like protein cspB| Length = 70 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/45 (55%), Positives = 35/45 (77%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M +M G VKWF+ KGFGFISP DGS+D+FVH S+I+ + +++L Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTL 45
>CSPA_BORPE (P0A352) Cold shock-like protein cspA| Length = 67 Score = 57.4 bits (137), Expect = 3e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KG+GFI+P+ G +DLF H S I+A+GF+SL Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSL 42
>CSPA_BORPA (P0A354) Cold shock-like protein cspA| Length = 67 Score = 57.4 bits (137), Expect = 3e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KG+GFI+P+ G +DLF H S I+A+GF+SL Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSL 42
>CSPA_BORBR (P0A353) Cold shock-like protein cspA| Length = 67 Score = 57.4 bits (137), Expect = 3e-08 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KG+GFI+P+ G +DLF H S I+A+GF+SL Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSL 42
>CSPF_STRCO (P48859) Cold shock protein scoF| Length = 67 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/39 (61%), Positives = 28/39 (71%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KGFGFI+ D G D+F H S+I A G+R L Sbjct: 4 GTVKWFNSEKGFGFIAQDGGGPDVFAHYSNINAQGYREL 42
>CSPD_VIBCH (Q9KSW4) Cold shock-like protein cspD| Length = 76 Score = 57.0 bits (136), Expect = 4e-08 Identities = 24/45 (53%), Positives = 32/45 (71%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M + GTVKWFN+ KGFGFI P+ D+F H S+I+ DG+R+L Sbjct: 1 MYSMATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTL 45
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 56.6 bits (135), Expect = 5e-08 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 87 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 146 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGPDG Sbjct: 147 EGEKG-AEAANVTGPDG 162
>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing| protein A) Length = 361 Score = 56.6 bits (135), Expect = 5e-08 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 79 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGPDG Sbjct: 139 EGEKG-AEAANVTGPDG 154
>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing| protein A) (Muscle Y-box protein YB2) (Y-box-binding protein-A) (RYB-A) Length = 361 Score = 56.6 bits (135), Expect = 5e-08 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 79 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGPDG Sbjct: 139 EGEKG-AEAANVTGPDG 154
>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing| protein A) (Y-box protein 3) Length = 361 Score = 56.6 bits (135), Expect = 5e-08 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 79 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 138 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGPDG Sbjct: 139 EGEKG-AEAANVTGPDG 154
>CSPA_SHEVI (Q9S1B7) Cold shock-like protein cspA| Length = 70 Score = 56.2 bits (134), Expect = 7e-08 Identities = 22/39 (56%), Positives = 32/39 (82%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN+ KGFGF++ D+G D+FVH +I ++GF++L Sbjct: 7 GTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTL 45
>CSPB_BACCE (Q45097) Cold shock-like protein cspB| Length = 65 Score = 55.8 bits (133), Expect = 9e-08 Identities = 25/41 (60%), Positives = 34/41 (82%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M G VKWFN+ KGFGFI +GSED+FVH S+I++DG+++L Sbjct: 1 MNGKVKWFNNEKGFGFIEM-EGSEDVFVHFSAIQSDGYKAL 40
>CSPA_LISMO (P0A355) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 55.8 bits (133), Expect = 9e-08 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAXXXXXXXXXXXXDDGRTKA 280 +GTVKWFN KGFGFI ++G +D+FVH S+I+ DGF+SL D+G+ Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSL-------------DEGQAVT 48 Query: 281 VDV----TGPDGSFVQ 316 DV GP + VQ Sbjct: 49 FDVEEGQRGPQAANVQ 64
>CSPA_LISIN (P0A356) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 55.8 bits (133), Expect = 9e-08 Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSLAXXXXXXXXXXXXDDGRTKA 280 +GTVKWFN KGFGFI ++G +D+FVH S+I+ DGF+SL D+G+ Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSL-------------DEGQAVT 48 Query: 281 VDV----TGPDGSFVQ 316 DV GP + VQ Sbjct: 49 FDVEEGQRGPQAANVQ 64
>YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 303 Score = 55.8 bits (133), Expect = 9e-08 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 36 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP+G VQ Sbjct: 96 KG-AEAANVTGPEGVPVQ 112
>YBX2B_XENLA (P45441) Y-box-binding protein 2-B (Cytoplasmic RNA-binding protein| p54) (mRNP3) Length = 324 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + +++GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 38 LATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGP G Sbjct: 98 EGEKG-AEAANVTGPGG 113
>CSPC_BACSU (P39158) Cold shock protein cspC| Length = 66 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/40 (62%), Positives = 34/40 (85%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFI ++G +D+FVH S+I++DGF+SL Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQSDGFKSL 41
>CSPA_RICPR (Q9ZCP9) Cold shock-like protein cspA| Length = 70 Score = 55.5 bits (132), Expect = 1e-07 Identities = 24/45 (53%), Positives = 31/45 (68%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M + G VKW+N TK FGFI D+G +D+FVH+S+I A G SL Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAIDAAGLHSL 45
>CSP2_LACPL (P96349) Cold shock protein 2| Length = 66 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/39 (64%), Positives = 33/39 (84%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KGFGFI+ +DG+ D+FVH S+I+ DGF++L Sbjct: 4 GTVKWFNADKGFGFITGEDGT-DVFVHFSAIQTDGFKTL 41
>CSPC_BACCR (P62171) Cold shock-like protein cspC| Length = 65 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M+G VKWFN KGFGFI +DG +D+FVH S+I+ DG++SL Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSL 40
>CSPC_BACCE (P62170) Cold shock-like protein cspC| Length = 65 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M+G VKWFN KGFGFI +DG +D+FVH S+I+ DG++SL Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSL 40
>CSPC_BACAN (P62169) Cold shock-like protein cspC| Length = 65 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/41 (60%), Positives = 33/41 (80%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M+G VKWFN KGFGFI +DG +D+FVH S+I+ DG++SL Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSL 40
>CSPA_RICCN (Q92GV1) Cold shock-like protein cspA| Length = 70 Score = 55.1 bits (131), Expect = 2e-07 Identities = 23/45 (51%), Positives = 31/45 (68%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M + G VKW+N TK FGFI D+G +D+FVH+S++ A G SL Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSL 45
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXX 253 + +++GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ Sbjct: 38 LATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97 Query: 254 XXDDGRTKAVDVTGPDG 304 + G +A +VTGP G Sbjct: 98 EGEKG-AEAANVTGPGG 113
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 57 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 117 KG-AEAANVTGPGGVPVQ 133
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 57 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 117 KG-AEAANVTGPGGVPVQ 133
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 57 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 116 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 117 KG-AEAANVTGPGGVPVQ 133
>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 55 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 115 KG-AEAANVTGPGGVPVQ 131
>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 55 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 115 KG-AEAANVTGPGGVPVQ 131
>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 321 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 55 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 114 Query: 263 DGRTKAVDVTGPDGSFVQ 316 G +A +VTGP G VQ Sbjct: 115 KG-AEAANVTGPGGVPVQ 131
>CSP1_LACPL (P71478) Cold shock protein 1| Length = 66 Score = 54.3 bits (129), Expect = 3e-07 Identities = 24/39 (61%), Positives = 33/39 (84%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KG+GFI+ +DG+ D+FVH S+I+ DGF++L Sbjct: 4 GTVKWFNADKGYGFITGEDGN-DVFVHFSAIQTDGFKTL 41
>CSPE_BACCE (Q45100) Cold shock-like protein cspE (Fragment)| Length = 54 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/41 (63%), Positives = 30/41 (73%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 + G VKWFN KGFGFI DGS D+FVH S+I DGF+SL Sbjct: 3 LTGKVKWFNSEKGFGFIEVADGS-DVFVHFSAITGDGFKSL 42
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXDDGR 271 GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + G Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKG- 156 Query: 272 TKAVDVTGPDG 304 +A +VTGP G Sbjct: 157 ARAANVTGPGG 167
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 53.1 bits (126), Expect = 6e-07 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXDDGR 271 GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + G Sbjct: 96 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKG- 154 Query: 272 TKAVDVTGPDG 304 +A +VTGP G Sbjct: 155 AEATNVTGPGG 165
>CSPD_HAEIN (P46449) Cold shock-like protein cspD| Length = 72 Score = 53.1 bits (126), Expect = 6e-07 Identities = 23/39 (58%), Positives = 28/39 (71%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN+ KGFGFIS + D+F H S I+ DG+RSL Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSL 42
>CSPE_BACCR (Q81DK5) Cold shock-like protein cspE| Length = 67 Score = 52.8 bits (125), Expect = 8e-07 Identities = 25/41 (60%), Positives = 30/41 (73%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 + G VKWFN KGFGFI DG+ D+FVH S+I DGF+SL Sbjct: 3 LTGKVKWFNSEKGFGFIEVADGN-DVFVHFSAITGDGFKSL 42
>CSPD_BACCE (Q45099) Cold shock-like protein cspD| Length = 66 Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/39 (61%), Positives = 30/39 (76%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KGFGFI +G ED+FVH S+I+ DGF++L Sbjct: 4 GKVKWFNGEKGFGFIEV-EGGEDVFVHFSAIQGDGFKTL 41
>CSPB_LISMO (P0A357) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/39 (58%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KGFGFI +G +D+FVH S+I+ +GF++L Sbjct: 4 GTVKWFNSEKGFGFIEV-EGGDDVFVHFSAIEGEGFKTL 41
>CSPB_LISIN (P0A358) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/39 (58%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 GTVKWFN KGFGFI +G +D+FVH S+I+ +GF++L Sbjct: 4 GTVKWFNSEKGFGFIEV-EGGDDVFVHFSAIEGEGFKTL 41
>CSPA_STRP8 (P0A361) Major cold shock protein| Length = 67 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/40 (57%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFIS ++G +D+F H S+I+ +GF++L Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTL 41
>CSPA_STRP3 (P0A360) Major cold shock protein| Length = 67 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/40 (57%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFIS ++G +D+F H S+I+ +GF++L Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTL 41
>CSPA_STRP1 (P0C0F1) Major cold shock protein| Length = 67 Score = 52.4 bits (124), Expect = 1e-06 Identities = 23/40 (57%), Positives = 33/40 (82%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFIS ++G +D+F H S+I+ +GF++L Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTL 41
>CSP_THEMA (O54310) Cold shock-like protein| Length = 66 Score = 52.0 bits (123), Expect = 1e-06 Identities = 22/41 (53%), Positives = 33/41 (80%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 M+G VKWF+ KG+GFI+ D+G D+FVH S+I+ +GF++L Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTL 40
>CSPA_STRP6 (Q5X9L4) Major cold shock protein| Length = 67 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/40 (57%), Positives = 32/40 (80%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWFN KGFGFIS ++G +D+F H S+I+ GF++L Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTSGFKTL 41
>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)| Length = 305 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = +2 Query: 95 RMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADG----FRSLAXXXXXXXXXXXXD 262 ++ GTVKWFN G+GFI+ +D ED+FVHQ++IK + RS+ + Sbjct: 36 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGE 95 Query: 263 DGRTKAVDVTGP 298 G +A +VTGP Sbjct: 96 KG-AEAANVTGP 106
>CSPE_BACAN (Q81QK2) Cold shock-like protein cspE| Length = 67 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/41 (58%), Positives = 29/41 (70%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 + G VKWFN KGFGFI +G D+FVH S+I DGF+SL Sbjct: 3 LTGKVKWFNSEKGFGFIEV-EGGNDVFVHFSAITGDGFKSL 42
>CSPD_BACCR (Q816H3) Cold shock-like protein cspD| Length = 66 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/39 (58%), Positives = 30/39 (76%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KGFGFI +G +D+FVH S+I+ DGF++L Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGDDVFVHFSAIQGDGFKTL 41
>CSPD_BACAN (Q81K90) Cold shock-like protein cspD| Length = 66 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/39 (58%), Positives = 30/39 (76%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN KGFGFI +G +D+FVH S+I+ DGF++L Sbjct: 4 GKVKWFNSEKGFGFIEV-EGGDDVFVHFSAIQGDGFKTL 41
>CSP_AQUAE (O67327) Cold shock-like protein| Length = 70 Score = 51.2 bits (121), Expect = 2e-06 Identities = 20/40 (50%), Positives = 32/40 (80%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +GTVKWF+ KG+GFI+ +D + D+FVH + I+ +GF++L Sbjct: 4 RGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTL 43
>CSPB_BACSU (P32081) Cold shock protein cspB (Major cold shock protein)| Length = 67 Score = 51.2 bits (121), Expect = 2e-06 Identities = 22/41 (53%), Positives = 32/41 (78%) Frame = +2 Query: 98 MKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 ++G VKWFN KGFGFI +G +D+FVH S+I+ +GF++L Sbjct: 2 LEGKVKWFNSEKGFGFIEV-EGQDDVFVHFSAIQGEGFKTL 41
>CSPA_BACCR (Q81GQ6) Major cold shock protein cspA| Length = 67 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN+ KGFGFI G D+FVH S+I+ DGF+SL Sbjct: 5 GQVKWFNNEKGFGFIEV-PGENDVFVHFSAIETDGFKSL 42
>CSPA_BACCE (Q45096) Major cold shock protein cspA| Length = 67 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN+ KGFGFI G D+FVH S+I+ DGF+SL Sbjct: 5 GQVKWFNNEKGFGFIEV-PGENDVFVHFSAIETDGFKSL 42
>CSPA_BACAN (Q81TW8) Major cold shock protein cspA| Length = 67 Score = 51.2 bits (121), Expect = 2e-06 Identities = 24/39 (61%), Positives = 29/39 (74%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN+ KGFGFI G D+FVH S+I+ DGF+SL Sbjct: 5 GQVKWFNNEKGFGFIEV-PGENDVFVHFSAIETDGFKSL 42
>CSPD_BACSU (P51777) Cold shock protein cspD| Length = 66 Score = 50.8 bits (120), Expect = 3e-06 Identities = 22/39 (56%), Positives = 31/39 (79%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 G VKWFN+ KGFGFI +G +D+FVH ++I+ DG++SL Sbjct: 4 GKVKWFNNEKGFGFIEV-EGGDDVFVHFTAIEGDGYKSL 41
>CSPB_BACST (P42016) Cold shock protein cspB (Major cold shock protein)| Length = 66 Score = 50.4 bits (119), Expect = 4e-06 Identities = 22/40 (55%), Positives = 32/40 (80%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +G VKWFN+ KG+GFI + GS D+FVH ++I+ +GF+SL Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKSL 41
>CSPA_SHIBO (Q53816) Major cold shock protein (Fragment)| Length = 46 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/30 (70%), Positives = 28/30 (93%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSL 31
>CSPA_SALVI (Q56178) Major cold shock protein (Fragment)| Length = 46 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/30 (70%), Positives = 28/30 (93%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSL 31
>CSPA_ENTAE (Q46664) Major cold shock protein (Fragment)| Length = 46 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/30 (70%), Positives = 28/30 (93%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSL 31
>CSPA_CITFR (Q46051) Major cold shock protein (Fragment)| Length = 46 Score = 50.4 bits (119), Expect = 4e-06 Identities = 21/30 (70%), Positives = 28/30 (93%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFI+PDDGS+D+FVH S+I+ DG++SL Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSL 31
>CSPB_BACCL (P41016) Cold shock protein cspB| Length = 66 Score = 49.3 bits (116), Expect = 8e-06 Identities = 21/40 (52%), Positives = 32/40 (80%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +G VKWFN+ KG+GFI + GS D+FVH ++I+ +GF++L Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKTL 41
>CSPA_KLEPN (Q48493) Major cold shock protein (Fragment)| Length = 46 Score = 48.1 bits (113), Expect = 2e-05 Identities = 20/31 (64%), Positives = 28/31 (90%) Frame = +2 Query: 128 TKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +KGFGFISP DGS+D+FVH S+I++D F++L Sbjct: 1 SKGFGFISPKDGSKDVFVHFSAIQSDSFKTL 31
>CSPB_BACGO (P41018) Cold shock protein cspB (Fragment)| Length = 57 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/37 (54%), Positives = 28/37 (75%) Frame = +2 Query: 110 VKWFNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 +KWFN KGFGFI +G +D+FVH S+I+ +GF+ L Sbjct: 1 IKWFNSEKGFGFIEV-EGQDDVFVHFSAIQGEGFKCL 36
>CSPA_AERHY (Q44078) Major cold-shock protein (Fragment)| Length = 46 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/30 (66%), Positives = 26/30 (86%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFISP DGS+D+FVH S+I+ GF++L Sbjct: 2 KGFGFISPTDGSKDVFVHFSAIQTPGFKTL 31
>TAPA_PSEFR (P72191) Temperature acclimation protein A (E7.0) (Fragment)| Length = 59 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/34 (61%), Positives = 27/34 (79%) Frame = +2 Query: 119 FNDTKGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 FND KGFGFI+P+ G DLFVH +I+ +GF+SL Sbjct: 1 FNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSL 33
>CSPA_AERSA (Q44317) Major cold-shock protein (Fragment)| Length = 46 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/30 (63%), Positives = 26/30 (86%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFISP DGS+D+FVH S+I++ F++L Sbjct: 2 KGFGFISPADGSKDVFVHFSAIQSTSFKTL 31
>CSDC2_RAT (Q63430) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/35 (51%), Positives = 27/35 (77%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F+ ++G GFI+P++GSED+FVH S I+ + Sbjct: 71 KGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSDC2_MOUSE (Q91YQ3) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/35 (51%), Positives = 27/35 (77%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F+ ++G GFI+P++GSED+FVH S I+ + Sbjct: 71 KGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSPA_YEREN (Q56922) Major cold shock protein (Fragment)| Length = 46 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/30 (60%), Positives = 27/30 (90%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFI+P DGS+D+FVH S+I+++ F++L Sbjct: 2 KGFGFITPADGSKDVFVHFSAIQSNDFKTL 31
>CSDC2_HUMAN (Q9Y534) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 153 Score = 43.9 bits (102), Expect = 4e-04 Identities = 18/35 (51%), Positives = 27/35 (77%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F+ ++G GFI+P++GSED+FVH S I+ + Sbjct: 70 KGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
>CSPA_PHOPO (Q52287) Major cold shock protein (Fragment)| Length = 46 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/31 (54%), Positives = 25/31 (80%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSLA 223 KGFGFI+ D+G D+FVH +I ++GF++LA Sbjct: 2 KGFGFITQDNGGADVFVHFRAIASEGFKTLA 32
>CHSP1_MOUSE (Q9CR86) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 148 Score = 38.5 bits (88), Expect = 0.015 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 65 KGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
>CHSP1_RAT (Q9WU49) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 38.5 bits (88), Expect = 0.015 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 64 KGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CHSP1_HUMAN (Q9Y2V2) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 38.5 bits (88), Expect = 0.015 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = +2 Query: 101 KGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 205 KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 64 KGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CSPA_PHOMO (Q51929) Major cold shock protein (Fragment)| Length = 46 Score = 37.4 bits (85), Expect = 0.033 Identities = 14/30 (46%), Positives = 24/30 (80%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGF++ ++G D+FVH +I ++GF++L Sbjct: 2 KGFGFLTQNNGGADVFVHFRAIASEGFKTL 31
>CSPA_STRPY (P0C0F0) Major cold shock protein (Fragment)| Length = 45 Score = 36.6 bits (83), Expect = 0.057 Identities = 16/30 (53%), Positives = 25/30 (83%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFIS ++G +D+F H S+I+ +GF++L Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTL 30
>CSPA_STRDY (Q53984) Major cold shock protein (Fragment)| Length = 45 Score = 36.6 bits (83), Expect = 0.057 Identities = 16/30 (53%), Positives = 25/30 (83%) Frame = +2 Query: 131 KGFGFISPDDGSEDLFVHQSSIKADGFRSL 220 KGFGFIS ++G +D+F H S+I+ +GF++L Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTL 30
>CSPS_STRTR (P81622) Cold shock protein CspSt (Fragment)| Length = 21 Score = 35.8 bits (81), Expect = 0.097 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = +2 Query: 104 GTVKWFNDTKGFGFISPDD 160 GTVKWFN KGFGFI+ +D Sbjct: 3 GTVKWFNAEKGFGFITSED 21
>CSPH_SALTY (P0A1D9) Cold shock-like protein cspH| Length = 70 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIK 199 M +M G VK F+ G G I+P DG +D+ VH S+ + Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACR 38
>CSPH_SALTI (P0A1E0) Cold shock-like protein cspH| Length = 70 Score = 34.3 bits (77), Expect = 0.28 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIK 199 M +M G VK F+ G G I+P DG +D+ VH S+ + Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACR 38
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 33.9 bits (76), Expect = 0.37 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF+CGE GHM+RDC Sbjct: 72 CFRCGEAGHMSRDC 85 Score = 32.3 bits (72), Expect = 1.1 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCGE GH++RDC Sbjct: 255 CYKCGEAGHISRDC 268 Score = 32.3 bits (72), Expect = 1.1 Identities = 9/14 (64%), Positives = 14/14 (100%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCG+PGH++R+C Sbjct: 224 CYKCGKPGHISREC 237 Score = 32.3 bits (72), Expect = 1.1 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCGE GHM+R+C Sbjct: 198 CYKCGESGHMSREC 211 Score = 32.3 bits (72), Expect = 1.1 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF+CGE GHM+R+C Sbjct: 45 CFRCGEEGHMSREC 58 Score = 31.6 bits (70), Expect = 1.8 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCG+ GH++RDC Sbjct: 99 CYKCGQEGHLSRDC 112 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCG+ GH++RDC Sbjct: 170 CYKCGDAGHISRDC 183 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCG+ GH++RDC Sbjct: 142 CYKCGDAGHISRDC 155
>CSPH_SHIFL (P0A985) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSS 193 M +M G VK F+ G GFI P DG +++ VH S+ Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISA 36
>CSPH_ECOLI (P0A982) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSS 193 M +M G VK F+ G GFI P DG +++ VH S+ Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISA 36
>CSPH_ECOL6 (P0A983) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSS 193 M +M G VK F+ G GFI P DG +++ VH S+ Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISA 36
>CSPH_ECO57 (P0A984) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSS 193 M +M G VK F+ G GFI P DG +++ VH S+ Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISA 36
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 33.5 bits (75), Expect = 0.48 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+ARDC Sbjct: 99 CYNCGKPGHLARDC 112 Score = 32.7 bits (73), Expect = 0.82 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+AR+C++ Sbjct: 159 CYRCGESGHLARECTI 174 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+A+DC + Sbjct: 54 CYRCGESGHLAKDCDL 69 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH AR+C Sbjct: 6 CFKCGRSGHWAREC 19
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 33.5 bits (75), Expect = 0.48 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+ARDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 32.7 bits (73), Expect = 0.82 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+AR+C++ Sbjct: 158 CYRCGESGHLARECTI 173 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+A+DC + Sbjct: 54 CYRCGESGHLAKDCDL 69 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH AR+C Sbjct: 6 CFKCGRSGHWAREC 19
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 33.5 bits (75), Expect = 0.48 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+ARDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 32.7 bits (73), Expect = 0.82 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+AR+C++ Sbjct: 158 CYRCGESGHLARECTI 173 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+A+DC + Sbjct: 54 CYRCGESGHLAKDCDL 69 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH AR+C Sbjct: 6 CFKCGRSGHWAREC 19
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 33.5 bits (75), Expect = 0.48 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+ARDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 32.7 bits (73), Expect = 0.82 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+AR+C++ Sbjct: 158 CYRCGESGHLARECTI 173 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+A+DC + Sbjct: 54 CYRCGESGHLAKDCDL 69 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH AR+C Sbjct: 6 CFKCGRSGHWAREC 19
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 33.5 bits (75), Expect = 0.48 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+ARDC Sbjct: 93 CYNCGKPGHLARDC 106 Score = 32.7 bits (73), Expect = 0.82 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+AR+C++ Sbjct: 153 CYRCGESGHLARECTI 168 Score = 32.0 bits (71), Expect = 1.4 Identities = 9/16 (56%), Positives = 14/16 (87%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C++CGE GH+A+DC + Sbjct: 48 CYRCGESGHLAKDCDL 63 Score = 30.4 bits (67), Expect = 4.1 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH AR+C Sbjct: 6 CFKCGRTGHWAREC 19
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 33.1 bits (74), Expect = 0.63 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +2 Query: 509 CFKCGEPGHMARDCSVN 559 C+KCG GH+ARDC N Sbjct: 85 CYKCGRVGHIARDCRTN 101 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 C+ CGE GH AR+C+ Sbjct: 19 CYNCGENGHQARECT 33
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 33.1 bits (74), Expect = 0.63 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C KCG+PGH+A+DC Sbjct: 421 CLKCGKPGHLAKDC 434
>CSPF_ECOLI (P0A976) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 33.1 bits (74), Expect = 0.63 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI 196 M +M G VK F+ G G I+P DG D+ +H S++ Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSAL 37
>CSPF_ECOL6 (P0A977) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 33.1 bits (74), Expect = 0.63 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +2 Query: 86 MEARMKGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI 196 M +M G VK F+ G G I+P DG D+ +H S++ Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSAL 37
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 33.1 bits (74), Expect = 0.63 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C KCG+PGH+A+DC Sbjct: 425 CLKCGKPGHLAKDC 438
>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 513 Score = 32.7 bits (73), Expect = 0.82 Identities = 11/14 (78%), Positives = 13/14 (92%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG+ GHMA+DC Sbjct: 413 CFKCGKIGHMAKDC 426
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 32.0 bits (71), Expect = 1.4 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+KCG P HMA+DC Sbjct: 94 CYKCGGPNHMAKDC 107 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+ GHM+RDC Sbjct: 118 CYTCGQAGHMSRDC 131
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 31.6 bits (70), Expect = 1.8 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG+ GH A+DC Sbjct: 545 CFKCGKKGHFAKDC 558
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 509 CFKCGEPGHMARDCSVN 559 CF+CG+PGH ++C N Sbjct: 161 CFRCGKPGHYIKNCPTN 177
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 509 CFKCGEPGHMARDCSVN 559 CF+CG+PGH ++C N Sbjct: 162 CFRCGKPGHYIKNCPTN 178
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+AR C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+AR C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+AR C Sbjct: 387 CYNCGKPGHLARQC 400
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 31.2 bits (69), Expect = 2.4 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+AR C Sbjct: 387 CYNCGKPGHLARQC 400
>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5| Length = 475 Score = 30.8 bits (68), Expect = 3.1 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +2 Query: 509 CFKCGEPGHMARDCSV 556 C CG PGH ARDC V Sbjct: 445 CLYCGYPGHFARDCPV 460
>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC| 3.4.23.-)] Length = 827 Score = 30.8 bits (68), Expect = 3.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+PGH +DC Sbjct: 460 CFNCGKPGHFKKDC 473
>GAG_OMVVS (P16900) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 446 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH+AR C Sbjct: 386 CYYCGKPGHLARQC 399
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 441 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH AR C Sbjct: 381 CYNCGKPGHQARQC 394
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CF+CG+ GH +RDC+ Sbjct: 356 CFRCGKAGHWSRDCT 370
>GAG_BIV27 (P19559) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH AR+C Sbjct: 423 CYHCGKPGHQARNC 436
>GAG_BIV06 (P19558) Gag polyprotein (p53) [Contains: Matrix protein p17;| Capsid protein p26; Nucleocapsid protein p14] Length = 476 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C+ CG+PGH AR+C Sbjct: 423 CYHCGKPGHQARNC 436
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CF+CG+ GH +RDC+ Sbjct: 357 CFRCGKAGHWSRDCT 371
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 30.4 bits (67), Expect = 4.1 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CF+CG+ GH +RDC+ Sbjct: 357 CFRCGKAGHWSRDCT 371
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 30.0 bits (66), Expect = 5.3 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 Query: 509 CFKCGEPGHMARDCS 553 CF+CG+ GH +RDC+ Sbjct: 362 CFRCGKVGHWSRDCT 376
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHLARNC 404
>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp24; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 656 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG+ GH A++C Sbjct: 548 CFKCGKKGHFAKNC 561
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 402 CFNCGKEGHLARNC 415
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 397 CFNCGKEGHLARNC 410
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 397 CFNCGKEGHLARNC 410
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 6.9 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHLARNC 404
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 509 CFKCGEPGHMARDCSVN 559 CF CGE GH++R C N Sbjct: 186 CFVCGEMGHLSRSCPDN 202
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+ RDC Sbjct: 526 CFSCGKTGHIKRDC 539
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 C KCG+ GH+A+DC Sbjct: 420 CLKCGKLGHLAKDC 433
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 509 CFKCGEPGHMARDCSVN 559 CF CGE GH++R C N Sbjct: 186 CFVCGEMGHLSRSCPDN 202
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 657 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CFKCG GH A++C Sbjct: 549 CFKCGRKGHFAKNC 562
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF CG+ GH+AR+C Sbjct: 391 CFNCGKEGHIARNC 404
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 449 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF C +PGH+AR C Sbjct: 377 CFNCKKPGHLARQC 390
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF C +PGH+AR C Sbjct: 377 CFNCKKPGHLARQC 390
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; Major core| protein p24; Nucleic acid-binding protein p10] Length = 450 Score = 29.3 bits (64), Expect = 9.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 509 CFKCGEPGHMARDC 550 CF C +PGH+AR C Sbjct: 377 CFNCKKPGHLARQC 390 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,772,262 Number of Sequences: 219361 Number of extensions: 517177 Number of successful extensions: 2265 Number of sequences better than 10.0: 190 Number of HSP's better than 10.0 without gapping: 2003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2226 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
