Clone Name | bart19d09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450190.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1314 Score = 295 bits (149), Expect = 9e-77 Identities = 320/377 (84%) Strand = Plus / Plus Query: 235 gagtacatccctttgtccatcttcgacaaggtgacgttcaacatgcaaatggccatcatc 294 ||||| || |||||||| ||||||||||||||||||| ||| ||||| ||||| |||||| Sbjct: 76 gagtatattcctttgtcgatcttcgacaaggtgacgtacaagatgcagatggcgatcatc 135 Query: 295 tacgccttcgccccgcccgcgccctcccccgctgccatcgagaagggcctcgccgccgta 354 ||||| ||| | ||||| ||||| || | || |||||||||||||| ||||| || || Sbjct: 136 tacgcgttcccgccgccggcgccgtcgacggcggccatcgagaaggggctcgcggcggtg 195 Query: 355 ctcgcccagtaccgagccttcgcgggccagctcggcgaggcgcccgacggcacgccgtcc 414 ||||| |||||||| || |||||||| |||||||| ||| ||||||||||| | || | Sbjct: 196 ctcgcgcagtaccgcgcgttcgcggggcagctcggggagtcgcccgacggcgaggcggcg 255 Query: 415 gtcatcctcaacgaccgtggcgcgcgcctggttgaggcgaccgtggacgccgacctcgtt 474 || | || |||||||| |||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 256 gtggtgctgaacgaccgcggcgcgcggctggtggaggcggcggtggacgccgacctcgtg 315 Query: 475 gacatggcgcccgcgaagcccacgccggagctgctcaagctgcacccggacctcgaggcg 534 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct: 316 gacatggcgccggcgaagcccacgccggagctgctccggctgcacccggacctggagggg 375 Query: 535 gagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctcgctcgcagtc 594 |||| | ||||||| ||||| || ||||| ||||||||| | |||||||| ||||| ||| Sbjct: 376 gagctccaggaggtggtgctgctccagctgacgcggttcaggtgcggctccctcgccgtc 435 Query: 595 gggttcacgtccaacca 611 |||||||| |||||||| Sbjct: 436 gggttcacctccaacca 452 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgagctccaagctcgtcaagcccgcctacaatg 208 |||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 1 atggaggtcaaggtattgagcagcaagctcgtcaagcccgcctacaatg 49
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 295 bits (149), Expect = 9e-77 Identities = 320/377 (84%) Strand = Plus / Plus Query: 235 gagtacatccctttgtccatcttcgacaaggtgacgttcaacatgcaaatggccatcatc 294 ||||| || |||||||| ||||||||||||||||||| ||| ||||| ||||| |||||| Sbjct: 21149413 gagtatattcctttgtcgatcttcgacaaggtgacgtacaagatgcagatggcgatcatc 21149472 Query: 295 tacgccttcgccccgcccgcgccctcccccgctgccatcgagaagggcctcgccgccgta 354 ||||| ||| | ||||| ||||| || | || |||||||||||||| ||||| || || Sbjct: 21149473 tacgcgttcccgccgccggcgccgtcgacggcggccatcgagaaggggctcgcggcggtg 21149532 Query: 355 ctcgcccagtaccgagccttcgcgggccagctcggcgaggcgcccgacggcacgccgtcc 414 ||||| |||||||| || |||||||| |||||||| ||| ||||||||||| | || | Sbjct: 21149533 ctcgcgcagtaccgcgcgttcgcggggcagctcggggagtcgcccgacggcgaggcggcg 21149592 Query: 415 gtcatcctcaacgaccgtggcgcgcgcctggttgaggcgaccgtggacgccgacctcgtt 474 || | || |||||||| |||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 21149593 gtggtgctgaacgaccgcggcgcgcggctggtggaggcggcggtggacgccgacctcgtg 21149652 Query: 475 gacatggcgcccgcgaagcccacgccggagctgctcaagctgcacccggacctcgaggcg 534 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct: 21149653 gacatggcgccggcgaagcccacgccggagctgctccggctgcacccggacctggagggg 21149712 Query: 535 gagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctcgctcgcagtc 594 |||| | ||||||| ||||| || ||||| ||||||||| | |||||||| ||||| ||| Sbjct: 21149713 gagctccaggaggtggtgctgctccagctgacgcggttcaggtgcggctccctcgccgtc 21149772 Query: 595 gggttcacgtccaacca 611 |||||||| |||||||| Sbjct: 21149773 gggttcacctccaacca 21149789 Score = 69.9 bits (35), Expect = 9e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 256 ttcgacaaggtgacgttcaacatgcaaatggccatcatctacgccttcgccccgcccgcg 315 |||||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| | | Sbjct: 21162401 ttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccgggg 21162460 Query: 316 ccctcccccgctgccatcgagaagggcctcgccgc 350 |||||| || | |||||||||||| |||||||| Sbjct: 21162461 ccctccgtggccgacatcgagaaggggctcgccgc 21162495 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 157 gcaatggaggtgaaggtgctgagctccaagctcgtcaagcccgcctacaatg 208 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 21149335 gcaatggaggtcaaggtattgagcagcaagctcgtcaagcccgcctacaatg 21149386 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 525 cctcgaggcggagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctc 584 |||||||| |||| ||||||||| |||| ||||||||||||||||| |||||||| Sbjct: 21162673 cctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctc 21162732 Query: 585 gctcgcagtcgggttcacg 603 ||| || |||||||||||| Sbjct: 21162733 gctggccgtcgggttcacg 21162751 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aatggaggtgaaggtgctgagctc 182 |||||||||||||||| ||||||| Sbjct: 21162307 aatggaggtgaaggtgttgagctc 21162330
>dbj|AK109723.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B05, full insert sequence Length = 2057 Score = 295 bits (149), Expect = 9e-77 Identities = 320/377 (84%) Strand = Plus / Plus Query: 235 gagtacatccctttgtccatcttcgacaaggtgacgttcaacatgcaaatggccatcatc 294 ||||| || |||||||| ||||||||||||||||||| ||| ||||| ||||| |||||| Sbjct: 223 gagtatattcctttgtcgatcttcgacaaggtgacgtacaagatgcagatggcgatcatc 282 Query: 295 tacgccttcgccccgcccgcgccctcccccgctgccatcgagaagggcctcgccgccgta 354 ||||| ||| | ||||| ||||| || | || |||||||||||||| ||||| || || Sbjct: 283 tacgcgttcccgccgccggcgccgtcgacggcggccatcgagaaggggctcgcggcggtg 342 Query: 355 ctcgcccagtaccgagccttcgcgggccagctcggcgaggcgcccgacggcacgccgtcc 414 ||||| |||||||| || |||||||| |||||||| ||| ||||||||||| | || | Sbjct: 343 ctcgcgcagtaccgcgcgttcgcggggcagctcggggagtcgcccgacggcgaggcggcg 402 Query: 415 gtcatcctcaacgaccgtggcgcgcgcctggttgaggcgaccgtggacgccgacctcgtt 474 || | || |||||||| |||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 403 gtggtgctgaacgaccgcggcgcgcggctggtggaggcggcggtggacgccgacctcgtg 462 Query: 475 gacatggcgcccgcgaagcccacgccggagctgctcaagctgcacccggacctcgaggcg 534 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct: 463 gacatggcgccggcgaagcccacgccggagctgctccggctgcacccggacctggagggg 522 Query: 535 gagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctcgctcgcagtc 594 |||| | ||||||| ||||| || ||||| ||||||||| | |||||||| ||||| ||| Sbjct: 523 gagctccaggaggtggtgctgctccagctgacgcggttcaggtgcggctccctcgccgtc 582 Query: 595 gggttcacgtccaacca 611 |||||||| |||||||| Sbjct: 583 gggttcacctccaacca 599 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 157 gcaatggaggtgaaggtgctgagctccaagctcgtcaagcccgcctacaatg 208 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 145 gcaatggaggtcaaggtattgagcagcaagctcgtcaagcccgcctacaatg 196
>dbj|AK072013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104K15, full insert sequence Length = 1418 Score = 295 bits (149), Expect = 9e-77 Identities = 320/377 (84%) Strand = Plus / Plus Query: 235 gagtacatccctttgtccatcttcgacaaggtgacgttcaacatgcaaatggccatcatc 294 ||||| || |||||||| ||||||||||||||||||| ||| ||||| ||||| |||||| Sbjct: 96 gagtatattcctttgtcgatcttcgacaaggtgacgtacaagatgcagatggcgatcatc 155 Query: 295 tacgccttcgccccgcccgcgccctcccccgctgccatcgagaagggcctcgccgccgta 354 ||||| ||| | ||||| ||||| || | || |||||||||||||| ||||| || || Sbjct: 156 tacgcgttcccgccgccggcgccgtcgacggcggccatcgagaaggggctcgcggcggtg 215 Query: 355 ctcgcccagtaccgagccttcgcgggccagctcggcgaggcgcccgacggcacgccgtcc 414 ||||| |||||||| || |||||||| |||||||| ||| ||||||||||| | || | Sbjct: 216 ctcgcgcagtaccgcgcgttcgcggggcagctcggggagtcgcccgacggcgaggcggcg 275 Query: 415 gtcatcctcaacgaccgtggcgcgcgcctggttgaggcgaccgtggacgccgacctcgtt 474 || | || |||||||| |||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 276 gtggtgctgaacgaccgcggcgcgcggctggtggaggcggcggtggacgccgacctcgtg 335 Query: 475 gacatggcgcccgcgaagcccacgccggagctgctcaagctgcacccggacctcgaggcg 534 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct: 336 gacatggcgccggcgaagcccacgccggagctgctccggctgcacccggacctggagggg 395 Query: 535 gagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctcgctcgcagtc 594 |||| | ||||||| ||||| || ||||| ||||||||| | |||||||| ||||| ||| Sbjct: 396 gagctccaggaggtggtgctgctccagctgacgcggttcaggtgcggctccctcgccgtc 455 Query: 595 gggttcacgtccaacca 611 |||||||| |||||||| Sbjct: 456 gggttcacctccaacca 472 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 157 gcaatggaggtgaaggtgctgagctccaagctcgtcaagcccgcctacaatg 208 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 18 gcaatggaggtcaaggtattgagcagcaagctcgtcaagcccgcctacaatg 69
>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0705E11 Length = 140729 Score = 295 bits (149), Expect = 9e-77 Identities = 320/377 (84%) Strand = Plus / Plus Query: 235 gagtacatccctttgtccatcttcgacaaggtgacgttcaacatgcaaatggccatcatc 294 ||||| || |||||||| ||||||||||||||||||| ||| ||||| ||||| |||||| Sbjct: 20170 gagtatattcctttgtcgatcttcgacaaggtgacgtacaagatgcagatggcgatcatc 20229 Query: 295 tacgccttcgccccgcccgcgccctcccccgctgccatcgagaagggcctcgccgccgta 354 ||||| ||| | ||||| ||||| || | || |||||||||||||| ||||| || || Sbjct: 20230 tacgcgttcccgccgccggcgccgtcgacggcggccatcgagaaggggctcgcggcggtg 20289 Query: 355 ctcgcccagtaccgagccttcgcgggccagctcggcgaggcgcccgacggcacgccgtcc 414 ||||| |||||||| || |||||||| |||||||| ||| ||||||||||| | || | Sbjct: 20290 ctcgcgcagtaccgcgcgttcgcggggcagctcggggagtcgcccgacggcgaggcggcg 20349 Query: 415 gtcatcctcaacgaccgtggcgcgcgcctggttgaggcgaccgtggacgccgacctcgtt 474 || | || |||||||| |||||||| ||||| |||||| | ||||||||||||||||| Sbjct: 20350 gtggtgctgaacgaccgcggcgcgcggctggtggaggcggcggtggacgccgacctcgtg 20409 Query: 475 gacatggcgcccgcgaagcccacgccggagctgctcaagctgcacccggacctcgaggcg 534 ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct: 20410 gacatggcgccggcgaagcccacgccggagctgctccggctgcacccggacctggagggg 20469 Query: 535 gagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctcgctcgcagtc 594 |||| | ||||||| ||||| || ||||| ||||||||| | |||||||| ||||| ||| Sbjct: 20470 gagctccaggaggtggtgctgctccagctgacgcggttcaggtgcggctccctcgccgtc 20529 Query: 595 gggttcacgtccaacca 611 |||||||| |||||||| Sbjct: 20530 gggttcacctccaacca 20546 Score = 69.9 bits (35), Expect = 9e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 256 ttcgacaaggtgacgttcaacatgcaaatggccatcatctacgccttcgccccgcccgcg 315 |||||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| | | Sbjct: 33158 ttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccgggg 33217 Query: 316 ccctcccccgctgccatcgagaagggcctcgccgc 350 |||||| || | |||||||||||| |||||||| Sbjct: 33218 ccctccgtggccgacatcgagaaggggctcgccgc 33252 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 157 gcaatggaggtgaaggtgctgagctccaagctcgtcaagcccgcctacaatg 208 ||||||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct: 20092 gcaatggaggtcaaggtattgagcagcaagctcgtcaagcccgcctacaatg 20143 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 525 cctcgaggcggagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctc 584 |||||||| |||| ||||||||| |||| ||||||||||||||||| |||||||| Sbjct: 33430 cctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctc 33489 Query: 585 gctcgcagtcgggttcacg 603 ||| || |||||||||||| Sbjct: 33490 gctggccgtcgggttcacg 33508 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 aatggaggtgaaggtgctgagctc 182 |||||||||||||||| ||||||| Sbjct: 33064 aatggaggtgaaggtgttgagctc 33087
>ref|XM_450191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 69.9 bits (35), Expect = 9e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 256 ttcgacaaggtgacgttcaacatgcaaatggccatcatctacgccttcgccccgcccgcg 315 |||||||||||||||| | ||||||| ||||||||||||||||| ||| ||||| | | Sbjct: 94 ttcgacaaggtgacgtacgacatgcagatggccatcatctacgcgttccggccgccgggg 153 Query: 316 ccctcccccgctgccatcgagaagggcctcgccgc 350 |||||| || | |||||||||||| |||||||| Sbjct: 154 ccctccgtggccgacatcgagaaggggctcgccgc 188 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 525 cctcgaggcggagcacgaggaggttgtgctcctgcagctcacgcggttccgttgcggctc 584 |||||||| |||| ||||||||| |||| ||||||||||||||||| |||||||| Sbjct: 366 cctcgagggggagatcgaggaggtcgtgcaggtgcagctcacgcggttcgcgtgcggctc 425 Query: 585 gctcgcagtcgggttcacg 603 ||| || |||||||||||| Sbjct: 426 gctggccgtcgggttcacg 444
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 370 gccttcgcgggccagctcggcg 391 |||||||||||||||||||||| Sbjct: 573555 gccttcgcgggccagctcggcg 573576 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ccgcctacaatgccggcgcc 216 |||||||||||||||||||| Sbjct: 2200625 ccgcctacaatgccggcgcc 2200644
>gb|AY008276.2| Pseudomonas aeruginosa MurE (murE), MurF (murF), MraY (mraY), and MurD (murD) genes, complete cds Length = 5280 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 370 gccttcgcgggccagctcggcg 391 |||||||||||||||||||||| Sbjct: 5173 gccttcgcgggccagctcggcg 5152
>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase, polyketide synthase type Is, acyl transferase, membrane protein, ABC transporter, sugar dehydratase/epimerase, sugar epimerase, sugar nucleotidyltransferase, sugar dehydratase/epimerase, thioesterase, acyl CoA ligase, amine oxidase, phosphopantetheinyl transferase, transcriptional regulator, carboxylase/carboxyltransferase, amidinohydrolase, amide synthetase, 5-aminolevulinate synthase, and acyl CoA ligase genes, complete cds; and unknown gene Length = 161719 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 339 gggcctcgccgccgtactcgcc 360 |||||||||||||||||||||| Sbjct: 30011 gggcctcgccgccgtactcgcc 30032
>gb|AE004856.1| Pseudomonas aeruginosa PAO1, section 417 of 529 of the complete genome Length = 24000 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 370 gccttcgcgggccagctcggcg 391 |||||||||||||||||||||| Sbjct: 15021 gccttcgcgggccagctcggcg 15042
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 328 gccatcgagaagggcctcgccg 349 |||||||||||||||||||||| Sbjct: 2744781 gccatcgagaagggcctcgccg 2744802
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 557 tgcagctcacgcggttccgttgcggctcgctcgcagtcgggttcacgtc 605 ||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 77499 tgcagctcacgcggttcgcctgcggctcgctggtgatcgggttcacgtc 77451
>gb|AY573298.1| Uncultured gamma proteobacterium hypothetical protein, putative transport protein, putative transcriptional activation protein, and penicillin acylase genes, complete cds; and hypothetical protein gene, partial cds Length = 7019 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 393 ggcgcccgacggcacgccgtccgtc 417 |||||| |||||||||||||||||| Sbjct: 6538 ggcgccggacggcacgccgtccgtc 6562
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 557 tgcagctcacgcggttccgttgcggctcgctcgcagtcgggttcacgtc 605 ||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct: 873075 tgcagctcacgcggttcgcctgcggctcgctggtgatcgggttcacgtc 873027 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 caatgccggcgccacgccggcgcc 227 |||||||| ||||||||||||||| Sbjct: 18613978 caatgccgccgccacgccggcgcc 18614001
>gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin biosynthetic locus, partial sequence Length = 77740 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 tcgcgggccagctcggcgaggcgcc 398 ||||||||||||||||| ||||||| Sbjct: 60692 tcgcgggccagctcggccaggcgcc 60716
>gb|AF540992.1| Pseudomonas aeruginosa isolate 1-60 pyoverdin biosynthetic locus, partial sequence Length = 38516 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 tcgcgggccagctcggcgaggcgcc 398 ||||||||||||||||| ||||||| Sbjct: 26229 tcgcgggccagctcggccaggcgcc 26253
>gb|AY765263.1| Pseudomonas aeruginosa strain MSH type II pyoverdine region, complete sequence Length = 50406 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 374 tcgcgggccagctcggcgaggcgcc 398 ||||||||||||||||| ||||||| Sbjct: 37705 tcgcgggccagctcggccaggcgcc 37729
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 caatgccggcgccacgccggcgcc 227 |||||||| ||||||||||||||| Sbjct: 87093 caatgccgccgccacgccggcgcc 87116
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gctcggcgaggcgcccgacggcacgccg 411 ||||| ||| |||||||||||||||||| Sbjct: 3162624 gctcgacgacgcgcccgacggcacgccg 3162597
>gb|AY273869.1| Pseudomonas aeruginosa PA14 pathogenicity island PAPI-1, complete sequence Length = 111332 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ggccagctcggcgaggcgcc 398 |||||||||||||||||||| Sbjct: 79220 ggccagctcggcgaggcgcc 79239
>gb|AY257538.1| Pseudomonas aeruginosa strain C plasmid pKLC102, complete sequence Length = 103532 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 ggccagctcggcgaggcgcc 398 |||||||||||||||||||| Sbjct: 32876 ggccagctcggcgaggcgcc 32857
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 atgccggcgccacgccggcg 225 |||||||||||||||||||| Sbjct: 860169 atgccggcgccacgccggcg 860150
>ref|XM_805911.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053508979.50) partial mRNA Length = 2802 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aatggaggtgaaggtgctga 178 |||||||||||||||||||| Sbjct: 2275 aatggaggtgaaggtgctga 2294
>emb|X68191.1|RNSCEX R.norvegicus mRNA for sodium-calcium exchanger Length = 3155 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1720 atggaggtgaaggtgctgag 1739
>ref|XM_811908.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053506279.10) partial mRNA Length = 2787 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aatggaggtgaaggtgctga 178 |||||||||||||||||||| Sbjct: 2269 aatggaggtgaaggtgctga 2288
>ref|XM_849979.1| PREDICTED: Canis familiaris similar to sine oculis homeobox homolog 5 (LOC612242), mRNA Length = 1761 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 cgccccgcccgcgccctcccccgc 326 ||||||||||||||||| |||||| Sbjct: 993 cgccccgcccgcgccctgccccgc 1016
>emb|BX936346.4| Human DNA sequence from clone WI2-88778H2 on chromosome X Contains the 5' end of the FLNA gene for filamin A, alpha (actin binding protein 280), two artifact genes, the EMD gene for emerin (Emery-Dreifuss muscular dystrophy), a TEC gene, the 5' end of the RPL10 gene for ribosomal protein L10 and four CpG islands, complete sequence Length = 40233 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 20445 cgaggcggagcacgaggagg 20426
>gb|AY182193.1| Achimenes fimbriata internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 625 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgaggcgcccgacggcacgc 409 |||||||||||||||||||| Sbjct: 69 cgaggcgcccgacggcacgc 50
>emb|AL162733.9| Human DNA sequence from clone RP11-397F23 on chromosome 9 Contains the 5'end of the protein tyrosine phosphatase (non-receptor type 3) gene, a novel pseudogene, apseudogene similar to mouse Ybox transcription factor and a CpG island, complete sequence Length = 189367 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cgccccgcccgcgccctccc 322 |||||||||||||||||||| Sbjct: 74860 cgccccgcccgcgccctccc 74879
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gccttcgcgggccagctcgg 389 |||||||||||||||||||| Sbjct: 1397424 gccttcgcgggccagctcgg 1397405
>emb|X15867.1|MLUVRA Micrococcus luteus homolog of the E.coli uvrA gene Length = 3739 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 cctcgccgccgtactcgccc 361 |||||||||||||||||||| Sbjct: 2165 cctcgccgccgtactcgccc 2146
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 gctcggcgaggcgcccgacggcacgccg 411 ||||| ||| |||||||||||||||||| Sbjct: 1340150 gctcgacgacgcgcccgacggcacgccg 1340123
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 aggcgcccgacggcacgccg 411 |||||||||||||||||||| Sbjct: 194217 aggcgcccgacggcacgccg 194236
>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3' end of the Gas7 gene for growth arrest specific 7, the Rcvrn gene for recoverin, the Glp2r gene for glucagon-like peptide 2 receptor, a novel gene and the gene for a novel protein (1110001P11Rik), complete sequence Length = 212636 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ccccgcccgcgccctccccc 324 |||||||||||||||||||| Sbjct: 187563 ccccgcccgcgccctccccc 187544
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 cgtcaagcccgcctacaatgccgg 212 |||||||||||||||||| ||||| Sbjct: 249300 cgtcaagcccgcctacaacgccgg 249323
>gb|AC092502.2| Homo sapiens chromosome 3 clone RP11-204J18, complete sequence Length = 156583 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaggtgaaggtgctgagctc 182 |||||||||||||||||||| Sbjct: 53893 gaggtgaaggtgctgagctc 53874
>gb|AF109164.1|AF109164 Rattus norvegicus strain Dahl/Rapp S Sprague-Dawley Na+/Ca2+-exchanging protein precursor, mRNA, complete cds Length = 2874 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1657 atggaggtgaaggtgctgag 1676
>gb|AF109163.1|AF109163 Rattus norvegicus strain Dahl/Rapp R Sprague-Dawley Na+/Ca2+-exchanging protein precursor, mRNA, complete cds Length = 2805 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1657 atggaggtgaaggtgctgag 1676
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 acgaccgtggcgcgcgcctg 444 |||||||||||||||||||| Sbjct: 204947 acgaccgtggcgcgcgcctg 204928
>gb|AY033398.1| Rattus norvegicus Na+/Ca2+ exchanger mRNA, complete cds Length = 2889 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1657 atggaggtgaaggtgctgag 1676
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 384 gctcggcgaggcgcccgacggcacgccg 411 ||||| ||| |||||||||||||||||| Sbjct: 1292910 gctcgacgacgcgcccgacggcacgccg 1292937
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 gcgccacgccggcgccttccaccg 235 ||||| |||||||||||||||||| Sbjct: 2462679 gcgccgcgccggcgccttccaccg 2462702 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 cgcgggccagctcggcgagg 394 |||||||||||||||||||| Sbjct: 1511026 cgcgggccagctcggcgagg 1511007
>gb|S78774.1| Na+/Ca2+ exchanger [human, neuroblastoma x glioma hybrid NG108-15 cells, mRNA Partial, 760 nt] Length = 760 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 708 atggaggtgaaggtgctgag 727
>dbj|AK120230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D20, full insert sequence Length = 2915 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 caatgccggcgccacgccggcgcc 227 |||||||| ||||||||||||||| Sbjct: 910 caatgccgccgccacgccggcgcc 933
>emb|AJ549779.1|SMA549779 Serratia marcescens flanking end of transposon insertion site, mutant 10E5, sequence from primer JEP132 Length = 399 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ccgtggcgcgcgcctggttg 448 |||||||||||||||||||| Sbjct: 275 ccgtggcgcgcgcctggttg 294
>dbj|AK110097.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-H04, full insert sequence Length = 3240 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 cctcgaggcggagcacgagg 544 |||||||||||||||||||| Sbjct: 2821 cctcgaggcggagcacgagg 2802
>emb|AJ336945.1|HSA336945 Homo sapiens genomic sequence surrounding NotI site, clone NR1-XK8R Length = 683 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 251 cgaggcggagcacgaggagg 232
>emb|AJ336895.1|HSA336895 Homo sapiens genomic sequence surrounding NotI site, clone NB6-961C Length = 523 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 174 cgaggcggagcacgaggagg 155
>dbj|AK105254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D09, full insert sequence Length = 2245 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 caatgccggcgccacgccggcgcc 227 |||||||| ||||||||||||||| Sbjct: 865 caatgccgccgccacgccggcgcc 888
>emb|AJ326723.1|HSA326723 Homo sapiens genomic sequence surrounding NotI site, clone NL4-BJ19C Length = 780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 233 cgaggcggagcacgaggagg 214
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 gctgcacccggacctcgagg 532 |||||||||||||||||||| Sbjct: 2864704 gctgcacccggacctcgagg 2864723
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 gccttcgcgggccagctcgg 389 |||||||||||||||||||| Sbjct: 1719640 gccttcgcgggccagctcgg 1719621
>gb|L44140.1|HUMFLNG6PD Homo sapiens chromosome X region from filamin (FLN) gene to glucose-6-phosphate dehydrogenase (G6PD) gene, complete cds's Length = 219447 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 50076 cgaggcggagcacgaggagg 50057
>ref|NM_019268.2| Rattus norvegicus solute carrier family 8 (sodium/calcium exchanger), member 1 (Slc8a1), mRNA Length = 3123 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1688 atggaggtgaaggtgctgag 1707
>gb|AF109166.1|AF109166 Rattus norvegicus strain Sprague-Dawley clone II Na+/Ca2+-exchanging protein precursor, mRNA, complete cds Length = 2805 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1657 atggaggtgaaggtgctgag 1676
>gb|AF109165.1|AF109165 Rattus norvegicus strain Sprague-Dawley clone I Na+/Ca2+-exchanging protein precursor, mRNA, complete cds Length = 2910 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1657 atggaggtgaaggtgctgag 1676
>emb|X68813.1|RNSCEA2 R.norvegicus mRNA II for sodium-calcium exchanger Length = 3126 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1782 atggaggtgaaggtgctgag 1801
>emb|X68812.1|RNSCEA1 R.norvegicus mRNA I for sodium-calcium exchanger Length = 3037 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 1771 atggaggtgaaggtgctgag 1790
>gb|AF115506.1|AF115506 Rattus norvegicus sodium/calcium exchanger 1 splice variant NaCa10 (NCX1) mRNA, partial cds Length = 645 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 292 atggaggtgaaggtgctgag 311
>gb|AC005746.1|AC005746 Homo sapiens chromosome 17, clone hRPK.332_H_18, complete sequence Length = 189356 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ccccgcccgcgccctccccc 324 |||||||||||||||||||| Sbjct: 17645 ccccgcccgcgccctccccc 17626
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 gaccgtggcgcgcgcctggttgag 450 |||||||||||| ||||||||||| Sbjct: 364346 gaccgtggcgcgggcctggttgag 364323
>gb|U04933.1|RNU04933 Rattus norvegicus Sprague-Dawley (CD-1) Na-Ca exchanger isoform NACA7 mRNA, complete cds Length = 3303 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 atggaggtgaaggtgctgag 179 |||||||||||||||||||| Sbjct: 2033 atggaggtgaaggtgctgag 2052
>emb|X86810.1|HSEDMDGEN Homo sapiens EDMD gene Length = 3339 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 cgaggcggagcacgaggagg 547 |||||||||||||||||||| Sbjct: 968 cgaggcggagcacgaggagg 949 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,326,099 Number of Sequences: 3902068 Number of extensions: 3326099 Number of successful extensions: 79674 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77636 Number of HSP's gapped (non-prelim): 2035 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)