>RL1_HHV11 (O12396) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 248

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
 Frame = +1

Query: 82  RPSNRPTKKTSAGRISVTMVVALGPGRFYGGGLPRPRVFPGDRVDPPAPVTDA------- 240
           RP   P +     R++   +  L   R  G G P P   P     P  P T A       
Sbjct: 124 RPFRLPPRLALRLRVTAEHLARLRLRRAGGEGAPEPPATPATPATPATPATPARVRFSPH 183

Query: 241 -----LLCWARDAHWSMGGLGAKRLRLQGRIEGNLVKLRRTARRDARVSGKSAKSSKVRA 405
                L+ WA  A  +  G  A+    + R        RR A  +A +       ++ RA
Sbjct: 184 VRVRHLVVWASAARLARRGSWARERADRARFR------RRVAEAEAVIGPCLGPEARARA 237

Query: 406 EGHGPAPA 429
              G  PA
Sbjct: 238 LARGAGPA 245

>ICP34_HHV11 (P36313) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 248

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
 Frame = +1

Query: 82  RPSNRPTKKTSAGRISVTMVVALGPGRFYGGGLPRPRVFPGDRVDPPAPVTDA------- 240
           RP   P +     R++   +  L   R  G G P P   P     P  P T A       
Sbjct: 124 RPFRLPPRLALRLRVTAEHLARLRLRRAGGEGAPEPPATPATPATPATPATPARVRFSPH 183

Query: 241 -----LLCWARDAHWSMGGLGAKRLRLQGRIEGNLVKLRRTARRDARVSGKSAKSSKVRA 405
                L+ WA  A  +  G  A+    + R        RR A  +A +       ++ RA
Sbjct: 184 VRVRHLVVWASAARLARRGSWARERADRARFR------RRVAEAEAVIGPCLGPEARARA 237

Query: 406 EGHGPAPA 429
              G  PA
Sbjct: 238 LARGAGPA 245

>ICP34_HHV1N (P37319) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 245

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
 Frame = +1

Query: 82  RPSNRPTKKTSAGRISVTMVVALGPGRFYGGGLPRPRVFPGDRVDPPAPVTDA------- 240
           RP   P +     R++   +  L   R  G G P+P   P     P  P T A       
Sbjct: 118 RPFRLPPRLALRLRVTAEHLARLRLRRAGGEGAPKPPATPATPATPATPATPATPARVRF 177

Query: 241 --------LLCWARDAHWSMGGLGAKRLRLQGRIEGNLVKLRRTARRDARVSGKSAKSSK 396
                   L+ WA  A  +  G  A+    + R        RR A  +A +       ++
Sbjct: 178 SPHVRVRHLVVWASAARLARRGSWARERADRARFR------RRVAEAEAVIGPCLGPEAR 231

Query: 397 VRAEGHGPAPA 429
            RA   G  PA
Sbjct: 232 ARALARGAGPA 242

>ICP34_HHV1D (P37318) Infected cell protein ICP34.5 (Neurovirulence factor|
           ICP34.5)
          Length = 252

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
 Frame = +1

Query: 82  RPSNRPTKKTSAGRISVTMVVALGPGRFYGGGLPRPRVFPGDRVDPPAPVTDA------- 240
           RP   P +     R++   +  L   R  G G P P   P     P  P T A       
Sbjct: 125 RPFRLPPRLALRLRVTAEHLARLRLRRAGGEGAPEPPATPATPATPATPATPATPARVRF 184

Query: 241 --------LLCWARDAHWSMGGLGAKRLRLQGRIEGNLVKLRRTARRDARVSGKSAKSSK 396
                   L+ WA  A  +  G  A+    + R        RR A  +A +       ++
Sbjct: 185 SPHVRVRHLVVWASAARLARRGSWARERADRARFR------RRVAEAEAVIGPCLGPKAR 238

Query: 397 VRAEGHGPAPA 429
            RA   G  PA
Sbjct: 239 ARALARGAGPA 249

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 7    PHHRRRNPPSL-TFIQIHRARASEGDRPSNRPTKKTS-AGRISVTMVVALGPGRFYGGGL 180
            P  +   PP   T  Q+  A    G  PS  P + T+  GR+     V    GR  GGG 
Sbjct: 1122 PSDKEAPPPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGR--GGGR 1179

Query: 181  PRPRVFPGDRVDPPA 225
            P P+V PG    PPA
Sbjct: 1180 PPPQVCPG--WSPPA 1192

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 28   PPSLTFIQIHRARASEGDRPSNRPTKKTS-AGRISVTMVVALGPGRFYGGGLPRPRVFPG 204
            P   T  Q+  A    G  PS  P + T+  GR+     V    GR  GGG P P+V PG
Sbjct: 1127 PKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGR--GGGRPPPQVCPG 1184

Query: 205  DRVDPPA 225
                PPA
Sbjct: 1185 --WSPPA 1189


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,742,579
Number of Sequences: 219361
Number of extensions: 650241
Number of successful extensions: 2743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)