ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185435.2| Oryza sativa (japonica cultivar-group), mRNA Length = 957 Score = 200 bits (101), Expect = 3e-48 Identities = 205/239 (85%), Gaps = 3/239 (1%) Strand = Plus / Plus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 69 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 128 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 129 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 188 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 189 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 248 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgcaccgcgcgccgcgacgccagg 366 ||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||| Sbjct: 249 agggccgcatcgagggctccatcgacaagctccgccgccgcgcccgccgcgacgccagg 307
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 200 bits (101), Expect = 3e-48 Identities = 205/239 (85%), Gaps = 3/239 (1%) Strand = Plus / Minus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 875302 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 875243 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 875242 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 875183 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 875182 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 875123 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgcaccgcgcgccgcgacgccagg 366 ||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||| Sbjct: 875122 agggccgcatcgagggctccatcgacaagctccgccgccgcgcccgccgcgacgccagg 875064
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 200 bits (101), Expect = 3e-48 Identities = 205/239 (85%), Gaps = 3/239 (1%) Strand = Plus / Minus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 56197 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 56138 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 56137 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 56078 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 56077 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 56018 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgcaccgcgcgccgcgacgccagg 366 ||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||| Sbjct: 56017 agggccgcatcgagggctccatcgacaagctccgccgccgcgcccgccgcgacgccagg 55959
>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) Length = 11618 Score = 194 bits (98), Expect = 2e-46 Identities = 206/240 (85%), Gaps = 4/240 (1%) Strand = Plus / Minus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || |||||||||| |||| Sbjct: 7390 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccgcggccgc 7331 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 7330 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 7271 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 7270 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 7211 Query: 308 agggccgcatcga-gggcaacctcgtcaagctccgccgcaccgcgcgccgcgacgccagg 366 ||||||||||||| |||| | ||| ||||||||||||| ||| ||||||||||||||| Sbjct: 7210 agggccgcatcgaggggctccatcgacaagctccgccgccgcgcccgccgcgacgccagg 7151
>dbj|AK073098.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003O07, full insert sequence Length = 956 Score = 184 bits (93), Expect = 2e-43 Identities = 204/239 (85%), Gaps = 4/239 (1%) Strand = Plus / Plus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 69 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 128 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 129 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 188 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 189 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 248 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgcaccgcgcgccgcgacgccagg 366 |||||||||||||||| | ||| ||||||||||||| ||| ||||||||||||||| Sbjct: 249 -gggccgcatcgagggctccatcgacaagctccgccgccgcgcccgccgcgacgccagg 306
>ref|XM_550509.1| Oryza sativa (japonica cultivar-group), mRNA Length = 752 Score = 182 bits (92), Expect = 7e-43 Identities = 187/218 (85%), Gaps = 3/218 (1%) Strand = Plus / Plus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 66 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 125 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 126 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 185 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 186 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 245 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgc 345 ||||||||||||||||| | ||| ||||||||||||| Sbjct: 246 agggccgcatcgagggctccatcgacaagctccgccgc 283
>dbj|AK060414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-E09, full insert sequence Length = 774 Score = 182 bits (92), Expect = 7e-43 Identities = 187/218 (85%), Gaps = 3/218 (1%) Strand = Plus / Plus Query: 131 tcaccatggtggtcgcgctcggtcccggcaggttctacggcggcggcctcccgcgcccgc 190 ||||||||||||| || || ||||||||| ||||||||||| || ||||||| || |||| Sbjct: 88 tcaccatggtggtggcactgggtcccggccggttctacggcagcagcctcccacggccgc 147 Query: 191 gcgtcttccccggcg---accgcgtcgacccgccggcccccgtcaccgacgcgctcctct 247 || ||||| |||||| |||||||||| ||||||| ||||||||||| ||||| | Sbjct: 148 gcttcttctccggcggcgaccgcgtcgagccgccggtggccgtcaccgacccgctcatgg 207 Query: 248 gctgggcgcgcgacgcgcactggtccatgggcggcctcggcgccaagcgcctccgcctgc 307 ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 208 cgtgggcgcacgaggcgcactggtccatgggcggcctcagctccaagcgcctccgcctgc 267 Query: 308 agggccgcatcgagggcaacctcgtcaagctccgccgc 345 ||||||||||||||||| | ||| ||||||||||||| Sbjct: 268 agggccgcatcgagggctccatcgacaagctccgccgc 305
>gb|AY109653.1| Zea mays CL14796_1 mRNA sequence Length = 1014 Score = 167 bits (84), Expect = 4e-38 Identities = 141/160 (88%) Strand = Plus / Minus Query: 165 ctacggcggcggcctcccgcgcccgcgcgtcttccccggcgaccgcgtcgacccgccggc 224 ||||||| ||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 889 ctacggcagcggcctgccgaggccgcgcttcttcccgggcgaccgcgtggacccgccggc 830 Query: 225 ccccgtcaccgacgcgctcctctgctgggcgcgcgacgcgcactggtccatgggcggcct 284 ||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||| | Sbjct: 829 gtccgtcaccgacccgctgctcgagtgggcgcgcgaagcgcactggtccatgggcggcat 770 Query: 285 cggcgccaagcgcctccgcctgcagggccgcatcgagggc 324 | ||| ||||||||||||||||||||||||||||||||| Sbjct: 769 cagcgtgaagcgcctccgcctgcagggccgcatcgagggc 730
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 210 cgtcgacccgccggcccccgtcaccgac 237 |||||||||||||||| ||||||||||| Sbjct: 244970 cgtcgacccgccggccaccgtcaccgac 244997
>emb|AJ291450.1|ADI291450 Anopheles dirus A RAPD DNA fragment Length = 895 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 59 gagcgagagcgagcgagggaga 80 |||||||||||||||||||||| Sbjct: 306 gagcgagagcgagcgagggaga 327
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 ccgacgacgacgattcggagga 473 |||||||||||||||||||||| Sbjct: 32050171 ccgacgacgacgattcggagga 32050150 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 acgcgctaggctccgacgacgacga 464 |||||||| |||||||||||||||| Sbjct: 30603911 acgcgctatgctccgacgacgacga 30603887
>dbj|AK102284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089H07, full insert sequence Length = 3801 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 ccgacgacgacgattcggagga 473 |||||||||||||||||||||| Sbjct: 154 ccgacgacgacgattcggagga 175
>dbj|AK065939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050N06, full insert sequence Length = 1954 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 452 ccgacgacgacgattcggagga 473 |||||||||||||||||||||| Sbjct: 158 ccgacgacgacgattcggagga 179
>gb|AY110553.1| Zea mays CL22344_1 mRNA sequence Length = 656 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 290 ccaagcgcctccgcctgcaggg 311 |||||||||||||||||||||| Sbjct: 333 ccaagcgcctccgcctgcaggg 312
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 ccgacgacgacgattcggagga 473 |||||||||||||||||||||| Sbjct: 33544 ccgacgacgacgattcggagga 33523
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 172 ggcggcctcccgcgcccgcgcg 193 |||||||||||||||||||||| Sbjct: 3896094 ggcggcctcccgcgcccgcgcg 3896115 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 catccccatcaccgccgccg 23 |||||||||||||||||||| Sbjct: 2680835 catccccatcaccgccgccg 2680854
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 452 ccgacgacgacgattcggagga 473 |||||||||||||||||||||| Sbjct: 70878 ccgacgacgacgattcggagga 70857
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 277 ggcggcctcggcgccaagcgcctcc 301 ||||||||||||||| ||||||||| Sbjct: 3528282 ggcggcctcggcgcccagcgcctcc 3528306 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tccatccccatcaccgccgc 21 |||||||||||||||||||| Sbjct: 1011626 tccatccccatcaccgccgc 1011645
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 192 cgtcttccccggcgaccgcgtcgac 216 |||||| |||||||||||||||||| Sbjct: 1169632 cgtctttcccggcgaccgcgtcgac 1169608
>ref|NM_003751.3| Homo sapiens eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa (EIF3S9), transcript variant 1, mRNA Length = 3009 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gccgcaccgcgcgccgcgacg 361 ||||||||||||||||||||| Sbjct: 25 gccgcaccgcgcgccgcgacg 5
>ref|NM_001037283.1| Homo sapiens eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa (EIF3S9), transcript variant 2, mRNA Length = 3084 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gccgcaccgcgcgccgcgacg 361 ||||||||||||||||||||| Sbjct: 25 gccgcaccgcgcgccgcgacg 5
>emb|AM085146.1| Magnetospirillum gryphiswaldense magnetosome island Length = 130000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 293 agcgcctccgcctgcagggcc 313 ||||||||||||||||||||| Sbjct: 11030 agcgcctccgcctgcagggcc 11010
>gb|AF514806.1| Leishmania mexicana mexicana mu adaptin (mu) gene, complete cds Length = 3036 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 209 gcgtcgacccgccggcccccgtcac 233 ||||||||||| ||||||||||||| Sbjct: 1982 gcgtcgacccggcggcccccgtcac 1958
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 cggcgaccgcgtcgacccgccggcc 225 ||||| ||||||||||||||||||| Sbjct: 108110 cggcgcccgcgtcgacccgccggcc 108134
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08, complete sequence Length = 129037 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 acgcgctaggctccgacgacgacga 464 |||||||| |||||||||||||||| Sbjct: 79619 acgcgctatgctccgacgacgacga 79595
>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09, complete sequence Length = 152732 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 440 acgcgctaggctccgacgacgacga 464 |||||||| |||||||||||||||| Sbjct: 7642 acgcgctatgctccgacgacgacga 7618
>emb|CR936490.1| Zebrafish DNA sequence from clone DKEY-152A3 in linkage group 13, complete sequence Length = 3451 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 2540 acagagcgagagcgagcgagcgaga 2516
>emb|BX547998.9| Zebrafish DNA sequence from clone DKEYP-118B1, complete sequence Length = 47625 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 40039 acagagcgagagcgagcgagagaga 40063
>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1, complete sequence Length = 226763 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 154362 acagagcgagagcgagcgagcgaga 154386
>emb|BX469919.10| Zebrafish DNA sequence from clone DKEY-15J7 in linkage group 16, complete sequence Length = 219865 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 37970 acagagcgagagcgagcgagcgaga 37994
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 cggcgaccgcgtcgacccgccggcc 225 |||||||| |||||||||||||||| Sbjct: 3387933 cggcgacctcgtcgacccgccggcc 3387957
>emb|BX537341.5| Zebrafish DNA sequence from clone CH211-103C12 in linkage group 9, complete sequence Length = 162398 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 100745 acagagcgagagcgagcgagagaga 100769
>gb|AC004971.3| Homo sapiens PAC clone RP5-1125K23 from 7, complete sequence Length = 123253 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 gccgcaccgcgcgccgcgacg 361 ||||||||||||||||||||| Sbjct: 9734 gccgcaccgcgcgccgcgacg 9754
>emb|BX664706.9| Zebrafish DNA sequence from clone CH211-251F6 in linkage group 20, complete sequence Length = 103574 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 65340 acagagcgagagcgagcgagagaga 65364
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 cgcgtcttccccggcgaccgc 210 ||||||||||||||||||||| Sbjct: 1001460 cgcgtcttccccggcgaccgc 1001480
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 cgtcttccccggcgaccgcgtcgac 216 |||||||||||||| |||||||||| Sbjct: 5671819 cgtcttccccggcggccgcgtcgac 5671843
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 338 tccgccgcaccgcgcgccgcgacgc 362 |||||||| |||||||||||||||| Sbjct: 1729630 tccgccgcgccgcgcgccgcgacgc 1729606 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ccgcctgcagggccgcatcg 319 |||||||||||||||||||| Sbjct: 1418701 ccgcctgcagggccgcatcg 1418720
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 339 ccgccgcaccgcgcgccgcgacgcc 363 ||||||||||| ||||||||||||| Sbjct: 1227089 ccgccgcaccgagcgccgcgacgcc 1227065
>emb|AL929514.7| Zebrafish DNA sequence from clone CH211-187D9, complete sequence Length = 174473 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 96664 acagagcgagagcgagcgagagaga 96688
>emb|BX005339.7| Zebrafish DNA sequence from clone DKEY-71C4, complete sequence Length = 172485 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgagggaga 80 |||||||||||||||||||| |||| Sbjct: 153251 acagagcgagagcgagcgagcgaga 153275
>ref|NM_185008.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cccggccaccctcgacgacgcgct 446 ||||| |||||||||||||||||| Sbjct: 165 cccggacaccctcgacgacgcgct 188
>ref|XM_450781.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 228 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 263 |||| ||||||||||||| | |||||||| |||||| Sbjct: 219 cgtcgccgacgcgctcctgtactgggcgcacgacgc 254
>gb|AY327498.1| Actinoplanes missouriensis glycogen metabolism gene cluster, partial sequence Length = 4937 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 ggcgaccgcgtcgacccgccggcc 225 ||||||||||||||||||| |||| Sbjct: 4618 ggcgaccgcgtcgacccgcaggcc 4595
>gb|AC141565.3| Mus musculus BAC clone RP23-160M21 from chromosome 14, complete sequence Length = 210128 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 agagcgagagcgagcgaggg 77 |||||||||||||||||||| Sbjct: 166651 agagcgagagcgagcgaggg 166670
>ref|XM_956704.1| Neurospora crassa OR74A hypothetical protein (NCU06525.1) partial mRNA Length = 1554 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ccatccccatcaccgccgccgcaa 26 ||||||||||||||||| |||||| Sbjct: 824 ccatccccatcaccgccaccgcaa 847
>ref|XM_326379.1| Neurospora crassa OR74A hypothetical protein (NCU06525.1) partial mRNA Length = 1554 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ccatccccatcaccgccgccgcaa 26 ||||||||||||||||| |||||| Sbjct: 824 ccatccccatcaccgccaccgcaa 847
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gcaccgcgcgccgcgacgcc 363 |||||||||||||||||||| Sbjct: 1870908 gcaccgcgcgccgcgacgcc 1870927
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cccggccaccctcgacgacgcgct 446 ||||| |||||||||||||||||| Sbjct: 32129530 cccggacaccctcgacgacgcgct 32129553
>ref|XM_534184.2| PREDICTED: Canis familiaris similar to CG8257-PA (LOC476983), mRNA Length = 1992 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggcggcggcctcccgcgccc 188 |||||||||||||||||||| Sbjct: 214 ggcggcggcctcccgcgccc 233
>ref|XM_849952.1| PREDICTED: Canis familiaris similar to KIAA1698 protein (LOC612216), mRNA Length = 3273 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 cgggcctgccccggccaccc 433 |||||||||||||||||||| Sbjct: 91 cgggcctgccccggccaccc 110
>emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, complete sequence Length = 157989 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acagagcgagagcgagcgag 75 |||||||||||||||||||| Sbjct: 60072 acagagcgagagcgagcgag 60091
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ccgcaccgcgcgccgcgacg 361 |||||||||||||||||||| Sbjct: 326927 ccgcaccgcgcgccgcgacg 326908
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gcaccgcgcgccgcgacgcc 363 |||||||||||||||||||| Sbjct: 31886 gcaccgcgcgccgcgacgcc 31905
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 gccaccctcgacgacgcgct 446 |||||||||||||||||||| Sbjct: 275444 gccaccctcgacgacgcgct 275425
>emb|BX547993.5| Zebrafish DNA sequence from clone CH211-282E16 in linkage group 19, complete sequence Length = 108908 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cagagcgagagcgagcgagggaga 80 ||||||||||||||||||| |||| Sbjct: 74100 cagagcgagagcgagcgagagaga 74077
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 cgccgcaccgcgcgccgcgacgcc 363 ||||||| |||||||||||||||| Sbjct: 3333161 cgccgcagcgcgcgccgcgacgcc 3333184
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cccggccaccctcgacgacgcgct 446 ||||| |||||||||||||||||| Sbjct: 130655 cccggacaccctcgacgacgcgct 130678
>gb|AF246990.1|AF246990 Chlamydomonas reinhardtii flagellar autotomy protein Fa1p (FA1) mRNA, complete cds Length = 5753 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gcctccgcctgcagggccgc 315 |||||||||||||||||||| Sbjct: 1780 gcctccgcctgcagggccgc 1761
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gcgtcttccccggcgaccgc 210 |||||||||||||||||||| Sbjct: 1882725 gcgtcttccccggcgaccgc 1882706
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 gcaccgcgcgccgcgacgcc 363 |||||||||||||||||||| Sbjct: 32907 gcaccgcgcgccgcgacgcc 32926
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 228 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 263 |||| ||||||||||||| | |||||||| |||||| Sbjct: 12724245 cgtcgccgacgcgctcctgtactgggcgcacgacgc 12724210 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 228 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 263 |||| ||||||||||||| | |||||||| |||||| Sbjct: 12719980 cgtcgccgacgcgctcctgtactgggcgcacgacgc 12719945
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cccggccaccctcgacgacgcgct 446 ||||| |||||||||||||||||| Sbjct: 32220042 cccggacaccctcgacgacgcgct 32220065
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cgcaccgcgcgccgcgacgc 362 |||||||||||||||||||| Sbjct: 3271576 cgcaccgcgcgccgcgacgc 3271557
>gb|DQ314496.1| Uncultured prokaryote 2E01B sequence Length = 34665 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cggcggcctcccgcgcccgc 190 |||||||||||||||||||| Sbjct: 25812 cggcggcctcccgcgcccgc 25831
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 228 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 263 |||| ||||||||||||| | |||||||| |||||| Sbjct: 32022 cgtcgccgacgcgctcctgtactgggcgcacgacgc 31987 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 228 cgtcaccgacgcgctcctctgctgggcgcgcgacgc 263 |||| ||||||||||||| | |||||||| |||||| Sbjct: 27757 cgtcgccgacgcgctcctgtactgggcgcacgacgc 27722
>dbj|AK105637.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-E02, full insert sequence Length = 2008 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 cccggccaccctcgacgacgcgct 446 ||||| |||||||||||||||||| Sbjct: 670 cccggacaccctcgacgacgcgct 693
>emb|Z59184.1|HS133F6F H.sapiens CpG island DNA genomic Mse1 fragment, clone 133f6, forward read cpg133f6.ft1a Length = 224 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 ccgccaagtcctccaaggtccgag 403 ||||| |||||||||||||||||| Sbjct: 49 ccgcccagtcctccaaggtccgag 26
>emb|BX901900.20| Zebrafish DNA sequence from clone CH211-189A21 in linkage group 3, complete sequence Length = 143917 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 cagagcgagagcgagcgagggaga 80 ||||||||||||||||||| |||| Sbjct: 1310 cagagcgagagcgagcgagagaga 1287
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ggcgaccgcgtcgacccgccggcc 225 ||||||||||||||||||| |||| Sbjct: 1080908 ggcgaccgcgtcgacccgcaggcc 1080931 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,383,202 Number of Sequences: 3902068 Number of extensions: 3383202 Number of successful extensions: 75280 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72002 Number of HSP's gapped (non-prelim): 3262 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
