ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19c03 |
|---|---|
| Clone Library Name | barley_pub |
>AOX1_TOBAC (Q41224) Alternative oxidase 1, mitochondrial precursor (EC| 1.-.-.-) Length = 353 Score = 167 bits (423), Expect = 2e-41 Identities = 76/95 (80%), Positives = 84/95 (88%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 E +V SYWG++ SK + +EDGTEWKW+CFRPWETY AD SIDLTKHH P T LDK AY+T Sbjct: 100 EKSVVSYWGVQPSK-VTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWT 158 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VKSLR+PTDIFFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 159 VKSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGG 193
>AOX2_TOBAC (Q40578) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 297 Score = 165 bits (417), Expect = 1e-40 Identities = 75/95 (78%), Positives = 83/95 (87%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 E +V SYWG+ SK + +EDGTEWKW+CFRPWETY AD SIDLTKHH P T LDK AY+T Sbjct: 44 EKSVVSYWGVPPSK-VTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWT 102 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VK+LR+PTDIFFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 103 VKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGG 137
>AOX1A_ARATH (Q39219) Alternative oxidase 1a, mitochondrial precursor (EC| 1.-.-.-) Length = 354 Score = 161 bits (408), Expect = 1e-39 Identities = 71/92 (77%), Positives = 83/92 (90%) Frame = +1 Query: 334 VNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKS 513 + SYWG+E +K + +EDG+EWKW+CFRPWETY AD +IDL KHHVP T LD+IAY+TVKS Sbjct: 104 IASYWGVEPNK-ITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKS 162 Query: 514 LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 163 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 194
>AOX1B_ARATH (O23913) Alternative oxidase 1b, mitochondrial precursor (EC| 1.-.-.-) Length = 325 Score = 160 bits (404), Expect = 4e-39 Identities = 71/95 (74%), Positives = 84/95 (88%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 E + SYWG++ K + +EDGTEWKWSCFRPWETY +D +IDL KHHVP+T+ DK+AY+T Sbjct: 72 EQLIVSYWGVKPMK-ITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWT 130 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 131 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 165
>AOX1C_ARATH (O22048) Alternative oxidase 1c, mitochondrial precursor (EC| 1.-.-.-) Length = 329 Score = 158 bits (399), Expect = 1e-38 Identities = 71/95 (74%), Positives = 83/95 (87%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 E + SYWG++ K + +EDGTEWKWSCFRPWETY AD +IDL KHHVP+T+ DKIAY+ Sbjct: 76 EQLIVSYWGVKPMK-ITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWM 134 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VKSLR+PTD+FFQRRYGCRA+MLETVAAVPGMVGG Sbjct: 135 VKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGG 169
>AOX2_SOYBN (Q41266) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 333 Score = 152 bits (385), Expect = 6e-37 Identities = 69/94 (73%), Positives = 80/94 (85%) Frame = +1 Query: 328 VAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTV 507 V +SYWGI + K +VREDGTEW W+CF PWE+Y ++ SIDLTKHHVP +LDK+AY TV Sbjct: 81 VVESSYWGISRPK-VVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTV 139 Query: 508 KSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 K LR PTD+FF+RRYGCRAMMLETVAAVPGMVGG Sbjct: 140 KLLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGG 173
>AOX1_MANIN (Q40294) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 318 Score = 152 bits (384), Expect = 7e-37 Identities = 69/95 (72%), Positives = 78/95 (82%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 + V++YWGI + K + REDG+EW W+CF PWETY +D SIDL KHHVP T +DK AY T Sbjct: 65 DAMVSNYWGISRPK-ITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRT 123 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VK LR PTDIFFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 124 VKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGG 158
>AOX2_ARATH (O22049) Alternative oxidase 2, mitochondrial precursor (EC| 1.-.-.-) Length = 353 Score = 152 bits (383), Expect = 1e-36 Identities = 70/95 (73%), Positives = 79/95 (83%), Gaps = 1/95 (1%) Frame = +1 Query: 328 VAVNSYWGIEQSK-KLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 VAV SYWGIE +K K+ R+DG++W W+CF PWETY A+ SIDL KHHVP + DK+AY Sbjct: 99 VAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRI 158 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VK LR PTDIFFQRRYGCRAMMLETVAAVPGMVGG Sbjct: 159 VKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGG 193
>AOX1_SAUGU (P22185) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 349 Score = 151 bits (382), Expect = 1e-36 Identities = 70/93 (75%), Positives = 80/93 (86%) Frame = +1 Query: 331 AVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVK 510 AV SYW + SK + +EDG+EW+W+CFRPWETY AD SIDL KHHVP T+LDK+A TVK Sbjct: 98 AVVSYWAVPPSK-VSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVK 156 Query: 511 SLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 +LR+PTDIFFQRRY CRAMMLETVAAVPGMVGG Sbjct: 157 ALRWPTDIFFQRRYACRAMMLETVAAVPGMVGG 189
>AOX1_SOYBN (Q07185) Alternative oxidase 1, mitochondrial precursor (EC| 1.-.-.-) Length = 321 Score = 147 bits (372), Expect = 2e-35 Identities = 67/95 (70%), Positives = 78/95 (82%) Frame = +1 Query: 325 EVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYT 504 E + SYWGI+ SK + ++DGTEWKW+CF PW TY AD SIDL KH P T LDK+A++T Sbjct: 68 EKVIVSYWGIQPSK-ITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWT 126 Query: 505 VKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 VK LR+PTD+FFQRRYGCRAMMLETVAAVPGMV G Sbjct: 127 VKVLRYPTDVFFQRRYGCRAMMLETVAAVPGMVAG 161
>AOX3_SOYBN (O03376) Alternative oxidase 3, mitochondrial precursor (EC| 1.-.-.-) Length = 326 Score = 133 bits (334), Expect = 5e-31 Identities = 69/161 (42%), Positives = 86/161 (53%) Frame = +1 Query: 127 RMAGSVLLRHAGAGADRLFATTASPAARTALAGGEGAWARMMSXXXXXXXXXXXXXXXXX 306 R A LL G R +T A R GG + Sbjct: 7 RSAARALLGGGGRSYYRQLSTAAIVEQRHQHGGGAFGSFHLRRMSTLPEVKDQHSEEKKN 66 Query: 307 XXXXXXEVAVNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLD 486 V SYWGI + K + REDGTEW W+CF PW++Y +D SID+TKHH P ++ D Sbjct: 67 EVNGTSNAVVTSYWGITRPK-VRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHTPKSLTD 125 Query: 487 KIAYYTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 K+A+ VK LR +DI+F+ RYGC AMMLET+AAVPGMVGG Sbjct: 126 KVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGG 166
>AOX3_ARATH (Q8LEE7) Alternative oxidase 3, mitochondrial precursor (EC| 1.-.-.-) Length = 318 Score = 127 bits (319), Expect = 3e-29 Identities = 52/92 (56%), Positives = 73/92 (79%) Frame = +1 Query: 334 VNSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKS 513 +++YWGI +K + + DG+ WKW+CF+PW++Y D SID+TKHH P+ DK AY+TV++ Sbjct: 68 ISTYWGIPPTK-ITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126 Query: 514 LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 L+ P +FFQR++ C AM+LETVAAVPGMVGG Sbjct: 127 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGG 158
>AOX_TRYBB (Q26710) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 329 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 8/58 (13%) Frame = +1 Query: 460 HHVPNTMLDKIAYYTVKSLRFPTDIFFQRRYGC--------RAMMLETVAAVPGMVGG 609 H PN ++D +AY +V++ R+ D F R+G R + LETVA VPGMVGG Sbjct: 77 HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGG 134
>AOX_BLUGR (Q8X1N9) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 358 Score = 38.5 bits (88), Expect = 0.015 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 24/74 (32%) Frame = +1 Query: 460 HHVPNTMLDKIAYYTVKSLRFPTDI------------------------FFQRRYGCRAM 567 H P D+IA Y V+ LRF TD+ +R++ R + Sbjct: 97 HRTPKDFSDRIALYLVRFLRFSTDLATGYKHDPVTITENGEKVLKKPYRMSERKWLIRMV 156 Query: 568 MLETVAAVPGMVGG 609 LE+VA VPGMV G Sbjct: 157 FLESVAGVPGMVAG 170
>AOX_AJECA (Q9Y711) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 356 Score = 34.7 bits (78), Expect = 0.22 Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 21/98 (21%) Frame = +1 Query: 379 EDGTEWKWSCFRPWETYTADTSIDLTKHHVPNTMLDKIAYYTVKSLRFPTDI-------- 534 E T WK F E + +I H D +A TV+ LR+ TD+ Sbjct: 78 ESVTTWKHPVFT--EKQMKEIAI---AHREAKNWSDWVALGTVRFLRWATDLATGYRHAA 132 Query: 535 -------------FFQRRYGCRAMMLETVAAVPGMVGG 609 +R++ R + LETVA VPGMVGG Sbjct: 133 PGKQGVEVPEQFQMTERKWVIRFIFLETVAGVPGMVGG 170
>Y058_ARCFU (O30178) Hypothetical UPF0113 protein AF0058| Length = 174 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -1 Query: 585 GNGLQHHCAAAVPPLEEDVGGEAERLDGVVGDLVEHRVGHVVLGEIDRRVR 433 G+ L H+ +++V G ++ L GV+G+L H G V +GE+ RR R Sbjct: 24 GDFLSHYALLVKEGEKKEVYGVSKELYGVIGELNPHYAG-VKIGEVGRRFR 73
>AOX_CRYNV (Q8NKE2) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 401 Score = 30.8 bits (68), Expect = 3.2 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = +1 Query: 454 TKHHVPNTMLDKIAYYTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGG 609 T + VP ++L + + LR + +++ R ++LE++A VPGMVGG Sbjct: 152 TPYEVPASVLAQKPI-PIAELRSKGKLLSDQKWLFRIILLESIAGVPGMVGG 202
>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor| Length = 1115 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%) Frame = +1 Query: 94 AEAFLGAQMSSRM-----AGSVLLRHAG----AGADRLFATTASPAARTALAGGEGAWA 243 A+A L +MSS + AG+ L+ AG + TTA+P A A AGG GA A Sbjct: 240 ADALLDLEMSSILDDDDGAGARQLQQMSDDLAAGLEAAATTTAAPEAGVAAAGGTGAGA 298
>K1949_MACMU (Q5TM66) Protein KIAA1949 homolog| Length = 613 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 402 VLLQAMGDVHRGHVDRSHQAPRAQHDARQDRLL-HRQVAPLPHRHLLP 542 VLL+A+G VH+ R + + Q R + LL R+ PL R P Sbjct: 77 VLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPVPLEARERRP 124
>K1949_HUMAN (Q6NYC8) Protein KIAA1949| Length = 613 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 402 VLLQAMGDVHRGHVDRSHQAPRAQHDARQDRLL-HRQVAPLPHRHLLP 542 VLL+A+G VH+ R + + Q R + LL R+ PL R P Sbjct: 77 VLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRP 124
>NOIL_ELAOL (Q8S3M3) NOI-like protein| Length = 228 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +3 Query: 438 HVDRSHQAPRAQHDARQDRLLHRQV-APLPHR 530 HV + H R +H R+DR HR V AP PHR Sbjct: 74 HVVKQH---RRKHHRREDREFHRYVEAPRPHR 102
>AOX_ASPNG (O74180) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 351 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 18/68 (26%) Frame = +1 Query: 460 HHVPNTMLDKIAYYTVKSLRFPTDI------------------FFQRRYGCRAMMLETVA 585 H D +A TV+ LR+ D+ ++++ R + LE+VA Sbjct: 98 HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157 Query: 586 AVPGMVGG 609 VPGMVGG Sbjct: 158 GVPGMVGG 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,019,533 Number of Sequences: 219361 Number of extensions: 933779 Number of successful extensions: 3741 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3598 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3737 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
