Clone Information

BLAST Search Result

Clone Name	bart19c01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)	39	0.003
2	DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-re...	31	0.81
3	APG_ARATH (P40602) Anter-specific proline-rich protein APG precu...	30	1.8
4	ENA_DROME (Q8T4F7) Protein enabled	29	3.1
5	SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Fo...	29	3.1
6	COL39_CAEEL (Q09455) Cuticle collagen 39 precursor	29	4.0
7	KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription fact...	29	4.0
8	DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-re...	29	4.0
9	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	28	5.3
10	EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimul...	28	5.3
11	WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family mem...	28	5.3
12	EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimul...	28	5.3
13	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	28	6.9
14	C1QA_PIG (Q69DL0) Complement C1q subcomponent subunit A precursor	28	6.9
15	SODE_MOUSE (O09164) Extracellular superoxide dismutase [Cu-Zn] p...	28	6.9
16	MP2K1_RABIT (P29678) Dual specificity mitogen-activated protein ...	28	6.9
17	MP2K1_HUMAN (Q02750) Dual specificity mitogen-activated protein ...	28	6.9
18	LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)	28	9.0
19	FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related pr...	28	9.0
20	ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrop...	28	9.0
21	GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge...	28	9.0
22	PDCD7_MOUSE (Q9WTY1) Programmed cell death protein 7 (ES18)	28	9.0

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 20/24 (83%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
 Frame = +3

Query: 54  MEDERSTHSYQGAE-ADQVEVTDR 122
           MEDERST SYQG E A+QVEVTDR
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDR 24

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>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)|
           (DRF2) (mDia3)
          Length = 1098

 Score = 31.2 bits (69), Expect = 0.81
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 126 GPCPSPPPDRPQLPGMSGCSSHPP 55
           GPCP PPP  P  P + G    PP
Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579

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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
 Frame = -2

Query: 123 PCPSPPPDR----PQLPGMSGCSSHPP 55
           PCPSPPP      P  P  S C S PP
Sbjct: 87  PCPSPPPKPQPKPPPAPSPSPCPSPPP 113

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>ENA_DROME (Q8T4F7) Protein enabled|
          Length = 834

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 150 SCRGGCRVGPCPSPPPDRPQLPGMSGCSSHPP 55
           S +GG    P P+PPP  P   G +G    PP
Sbjct: 545 SSQGGPGGPPAPAPPPPPPSFGGAAGGGPPPP 576

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>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression|
            inhibition of growth A)
          Length = 1790

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 117  PSPPPDRPQLPGMSGCSSHPP 55
            P PPP  P  PG+SG +  PP
Sbjct: 1017 PPPPPPPPAHPGLSGAAPPPP 1037

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>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor|
          Length = 323

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 153 SSCRGGCRVGPCPSPPPDRPQLPGMSGCSSHP 58
           S C  G +   CP+ PP  P  PG  G    P
Sbjct: 79  SQCNCGPQASNCPAGPPGPPGAPGDRGLDGQP 110

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>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 144 RGGCRVGPCPSPPPDRPQ--LPGMSGCSSHPP 55
           R  CR+ P P  PP  P+   PG +G  + PP
Sbjct: 92  RTPCRLPPAPPAPPPGPEPASPGQAGAPAAPP 123

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>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1)
          Length = 1248

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 123 PCPSPPPDRPQLPGMSGCSSHPP 55
           P P PPP  P LPG +  S  PP
Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623



 Score = 28.5 bits (62), Expect = 5.3
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = -2

Query: 156 PSSCRGGCRVGPCPSPP------PDRPQLPGMSGCSSHPP 55
           PSS  GG  + P P  P      P  P LPG +G    PP
Sbjct: 645 PSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPP 684



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
 Frame = -2

Query: 156 PSSCRGGCRVGPCPSP-------PPDRPQLPGMSGCSSHPP 55
           P    G  R+ P P P       PP  P LPG +G    PP
Sbjct: 657 PPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPP 697

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -2

Query: 123 PCPSPPPDR-PQLPGMSGCSSHPP*SR 46
           P P PPP R P  PGM G    PP SR
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSR 324

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>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated|
           phosphoprotein-like)
          Length = 422

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -2

Query: 156 PSSCRGGCRVGPCPSPPPDRPQLPGMSGCSSHPP*SRSVGAAKDSWELENS 4
           P SC G       P PPP  P  P  +G +  PP     G A+ S   E+S
Sbjct: 182 PVSCSG-------PPPPPPPPVPPPPTGATPPPPPPLPAGGAQGSSHDESS 225

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>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
          Length = 501

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -2

Query: 123 PCPSPPPDRPQLPGMSGCSSHPP*SRSVGAAK 28
           P P PPP  P  PG S  SS P     V  AK
Sbjct: 396 PPPGPPPPPPGPPGPSSLSSSPMHGPPVAEAK 427

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>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated|
           phosphoprotein-like)
          Length = 416

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -2

Query: 156 PSSCRGGCRVGPCPSPPPDRPQLPGMSGCSSHPP*SRSVGAAKDSWELENS 4
           P SC G       P PPP  P  P  +G +  PP     G A+ S   E+S
Sbjct: 176 PVSCSG-------PPPPPPPPVPPPPTGATPPPPPPLPAGGAQGSSHDESS 219

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
 Frame = -2

Query: 132 RVGPCPSPPPDRPQLPGMSGCSSHPP*SRSV------GAAKDSWE 16
           R GP P  PPDRP     +G    PP S S+         +D WE
Sbjct: 411 RSGPRPPLPPDRPS----AGAPPPPPPSTSIRNGFQDSPCEDEWE 451

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>C1QA_PIG (Q69DL0) Complement C1q subcomponent subunit A precursor|
          Length = 247

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 123 PCPSPPPDRPQLPGMSGCSSHP 58
           P PS PP  P LPG+ G   +P
Sbjct: 87  PGPSGPPGLPGLPGLKGIKGNP 108

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>SODE_MOUSE (O09164) Extracellular superoxide dismutase [Cu-Zn] precursor (EC|
           1.15.1.1) (EC-SOD)
          Length = 251

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 135 CRVGPCPSPPPDRPQLPGM 79
           CRV P  + PPD+PQ+ G+
Sbjct: 77  CRVQPSATLPPDQPQITGL 95

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>MP2K1_RABIT (P29678) Dual specificity mitogen-activated protein kinase kinase 1|
           (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK 1) (ERK
           activator kinase 1) (MAPK/ERK kinase 1) (MEK1)
          Length = 392

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -2

Query: 129 VGPCPSPPPDRPQLPGMSGC------SSHPP*SRSVGAAKDSWELEN 7
           VG  P PPPD  +L  M GC      +  PP  R+ G    S+ +++
Sbjct: 257 VGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDS 303

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>MP2K1_HUMAN (Q02750) Dual specificity mitogen-activated protein kinase kinase 1|
           (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK 1) (ERK
           activator kinase 1) (MAPK/ERK kinase 1) (MEK1)
          Length = 392

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -2

Query: 129 VGPCPSPPPDRPQLPGMSGC------SSHPP*SRSVGAAKDSWELEN 7
           VG  P PPPD  +L  M GC      +  PP  R+ G    S+ +++
Sbjct: 257 VGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDS 303

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>LECT_SOLTU (Q9S8M0) Chitin-binding lectin 1 precursor (PL-I)|
          Length = 323

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 150 SCRGGCRVGPCPSPPPDRPQLPGMSGCSSHPP 55
           +C+  C++ P P PPP  P  P  S  S  PP
Sbjct: 142 NCQSQCKL-PSPPPPPPPPSPPPPSPPSPPPP 172

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>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 123 PCPSPPPDRPQLPGMSGCSSHPP*SRSVGAAKD 25
           P P PPP  PQ       +  PP +R   AA D
Sbjct: 60  PAPQPPPPPPQQQQQPPPAPQPPQARGAPAADD 92

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>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -2

Query: 126 GPCPSPPPDRPQL-PGMS--GCSSHPP*SRSVGAAKDS 22
           GP P  PP  PQL PG +  G  S PP     GAA  S
Sbjct: 207 GPPPGAPPPHPQLYPGSAGGGVLSGPPMGPKGGAAASS 244

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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 123  PCPSPPPDRPQLPGMSGCSSHPP 55
            P P PPP  P    M+G   HPP
Sbjct: 1294 PPPRPPPPPPPTGQMNGTVDHPP 1316

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>PDCD7_MOUSE (Q9WTY1) Programmed cell death protein 7 (ES18)|
          Length = 482

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 156 PSSCRGGCRVGPCPSP--PPDRPQLPGMSGCSSHP 58
           P S   GC   P PSP  PP  PQ PG    +S P
Sbjct: 20  PPSAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAP 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,675,001
Number of Sequences: 219361
Number of extensions: 335106
Number of successful extensions: 2910
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2803
length of database: 80,573,946
effective HSP length: 27
effective length of database: 74,651,199
effective search space used: 1791628776
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result