Clone Name | bart19c01 |
---|---|
Clone Library Name | barley_pub |
>emb|X84056.1|HVPAF93 H.vulgare paf93 gene Length = 1154 Score = 289 bits (146), Expect = 1e-75 Identities = 149/150 (99%) Strand = Plus / Plus Query: 8 ttctctagctcccacgagtctttagctgcaccgaccgatctcgatcatggaggatgagag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 50 ttctctagctcccacgagtctttagctgcaccgaccgatctcgatcatggaggatgagag 109 Query: 68 gagcacccactcataccagggagctgaggccgatcaggtggaggtgacggacaggggcct 127 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110 gagcacccagtcataccagggagctgaggccgatcaggtggaggtgacggacaggggcct 169 Query: 128 actcggcaacctcctcggcaagaagaagga 157 |||||||||||||||||||||||||||||| Sbjct: 170 actcggcaacctcctcggcaagaagaagga 199
>gb|AF043093.1|AF043093 Hordeum vulgare dehydrin 8 (dhn8) gene, complete cds Length = 2254 Score = 289 bits (146), Expect = 1e-75 Identities = 149/150 (99%) Strand = Plus / Plus Query: 8 ttctctagctcccacgagtctttagctgcaccgaccgatctcgatcatggaggatgagag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 ttctctagctcccacgagtctttagctgcaccgaccgatctcgatcatggaggatgagag 1287 Query: 68 gagcacccactcataccagggagctgaggccgatcaggtggaggtgacggacaggggcct 127 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1288 gagcacccagtcataccagggagctgaggccgatcaggtggaggtgacggacaggggcct 1347 Query: 128 actcggcaacctcctcggcaagaagaagga 157 |||||||||||||||||||||||||||||| Sbjct: 1348 actcggcaacctcctcggcaagaagaagga 1377
>gb|AF181458.1|AF181458 Hordeum vulgare dehydrin (Dhn8) mRNA, complete cds Length = 808 Score = 194 bits (98), Expect = 5e-47 Identities = 104/106 (98%) Strand = Plus / Plus Query: 52 tcatggaggatgagaggagcacccactcataccagggagctgaggccgatcaggtggagg 111 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1 tcatggaggatgagaggagcacccagtcataccagggagctgaggccgatcaggtggagg 60 Query: 112 tgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgacggacaggggcctactcggcaacctcctcggcaagaagaagga 106
>emb|AJ890140.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn11 gene) Length = 1127 Score = 186 bits (94), Expect = 1e-44 Identities = 123/132 (93%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 28 tttagctgcaccgaccgatctcgatcatggaggatgagaggagcacccactcataccagg 87 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 64 tttagctgcaccgatcgatctcgatcatggaggatgagaggagcacccagtcataccagg 123 Query: 88 gagctgag---gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcg 144 ||| |||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 124 gaggtgaggccgccgagcaggtggaggtgacagacaggggcctcctcggcaacctcctcg 183 Query: 145 gcaagaagaagg 156 |||||||||||| Sbjct: 184 gcaagaagaagg 195
>gb|U73211.1|TAU73211 Triticum aestivum cold acclimation protein WCOR410c (Wcor410c) mRNA, complete cds Length = 1242 Score = 186 bits (94), Expect = 1e-44 Identities = 123/132 (93%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 28 tttagctgcaccgaccgatctcgatcatggaggatgagaggagcacccactcataccagg 87 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 70 tttagctgcaccgatcgatctcgatcatggaggatgagaggagcacccagtcataccagg 129 Query: 88 gagctgag---gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcg 144 ||| |||| ||||| |||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 130 gaggtgaggccgccgagcaggtggaggtgacagacaggggcctcctcggcaacctcctcg 189 Query: 145 gcaagaagaagg 156 |||||||||||| Sbjct: 190 gcaagaagaagg 201
>gb|U73210.1|TAU73210 Triticum aestivum cold acclimation protein WCOR410b (Wcor410b) mRNA, complete cds Length = 1181 Score = 186 bits (94), Expect = 1e-44 Identities = 120/128 (93%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 32 gctgcaccgaccgatctcgatcatggaggatgagaggagcacccactcataccagggagc 91 ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 56 gctgcaccgaccgatctcgatcatggaggatgagaggagcacccagtcgtaccagggagg 115 Query: 92 tgag---gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcggcaa 148 |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 116 tgaggccgccgagcaggtggaggtgacggacaggggcctcctcggcaacctcctcggcaa 175 Query: 149 gaagaagg 156 |||||||| Sbjct: 176 gaagaagg 183
>gb|L29152.1|WHTWCOR Triticum aestivum cold acclimation protein (WCOR410) mRNA, complete cds Length = 1136 Score = 186 bits (94), Expect = 1e-44 Identities = 123/132 (93%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 28 tttagctgcaccgaccgatctcgatcatggaggatgagaggagcacccactcataccagg 87 |||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 61 tttagctgcaccgatcgatctcgatcatggaggatgagaggagcacccagtcgtaccagg 120 Query: 88 gagctgag---gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcg 144 ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct: 121 gaggtgaggccgccgagcaggtggaggtgacggacaggggcctcctcggcaacctcctcg 180 Query: 145 gcaagaagaagg 156 |||||||||||| Sbjct: 181 gcaagaagaagg 192
>gb|L19419.1|LHPESI Lophopyrum elongatum ES135 mRNA sequence Length = 1130 Score = 180 bits (91), Expect = 8e-43 Identities = 123/133 (92%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 28 tttagctgcaccgaccgatctcgatcatggaggatgagaggagcacccactcataccagg 87 |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 60 tttagctgcaccgatcgatctcgatcatggaggatgagaggagcacccagtcataccagg 119 Query: 88 gagctgag---gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcg 144 ||| |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 120 gaggtgaggccgccgagcaggtggaggtgacggataggggcctcctcggcaacctcctcg 179 Query: 145 gcaagaagaagga 157 |||||||| |||| Sbjct: 180 gcaagaaggagga 192
>gb|AF343068.1|AF343068 Hordeum vulgare Dhn8 gene, Dhn8s allele, promoter region Length = 1250 Score = 85.7 bits (43), Expect = 4e-14 Identities = 43/43 (100%) Strand = Plus / Plus Query: 8 ttctctagctcccacgagtctttagctgcaccgaccgatctcg 50 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1208 ttctctagctcccacgagtctttagctgcaccgaccgatctcg 1250
>gb|AY587109.1| Oryza sativa (japonica cultivar-group) dehydration-stress inducible protein 1 mRNA, complete cds Length = 1315 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 160 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 215 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 103 tcgatcatggaggatgagagga 124
>gb|AY786415.1| Oryza sativa (japonica cultivar-group) SK3-type dehydrin 1 (Dhn1) mRNA, complete cds Length = 1117 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 150 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 205 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 93 tcgatcatggaggatgagagga 114
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 27185221 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 27185166 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 27185278 tcgatcatggaggatgagagga 27185257
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 81670 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 81615 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 81727 tcgatcatggaggatgagagga 81706
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 35892 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 35837 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 35949 tcgatcatggaggatgagagga 35928
>dbj|AK070197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042N13, full insert sequence Length = 1292 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 102 caggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaagga 157 ||||||||||||| |||||||||||| ||| ||||||||| |||| ||||||||| Sbjct: 172 caggtggaggtgaaggacaggggcctcttcgacaacctccttggcaggaagaagga 227 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 tcgatcatggaggatgagagga 69 |||||||||||||||||||||| Sbjct: 115 tcgatcatggaggatgagagga 136
>gb|L35913.1|MZELIPASE Zea mays dehydrin (dhn-2) mRNA, complete cds Length = 1277 Score = 48.1 bits (24), Expect = 0.008 Identities = 27/28 (96%) Strand = Plus / Plus Query: 49 cgatcatggaggatgagaggagcaccca 76 ||||||||||||||||||||| |||||| Sbjct: 46 cgatcatggaggatgagaggaacaccca 73
>gb|AY111114.1| Zea mays CL2452_1 mRNA sequence Length = 1256 Score = 48.1 bits (24), Expect = 0.008 Identities = 27/28 (96%) Strand = Plus / Plus Query: 49 cgatcatggaggatgagaggagcaccca 76 ||||||||||||||||||||| |||||| Sbjct: 46 cgatcatggaggatgagaggaacaccca 73
>gb|AF457977.1| Zea mays clone cbn10.pk0055.e11, mRNA sequence Length = 556 Score = 40.1 bits (20), Expect = 1.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 96 gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaag 155 |||||||||||||| |||| ||| ||||| || || | || ||| ||||||| ||||||| Sbjct: 141 gccgatcaggtggacgtgaaggatagggggctcctggacagccttctcggcaggaagaag 200 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 catggaggatgagaggagcaccca 76 ||||||||||||||||| |||||| Sbjct: 83 catggaggatgagaggaacaccca 106
>gb|AY105067.1| Zea mays PCO081051 mRNA sequence Length = 1398 Score = 40.1 bits (20), Expect = 1.9 Identities = 50/60 (83%) Strand = Plus / Plus Query: 96 gccgatcaggtggaggtgacggacaggggcctactcggcaacctcctcggcaagaagaag 155 |||||||||||||| |||| ||| ||||| || || | || ||| ||||||| ||||||| Sbjct: 175 gccgatcaggtggacgtgaaggatagggggctcctggacagccttctcggcaggaagaag 234 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 catggaggatgagaggagcaccca 76 ||||||||||||||||| |||||| Sbjct: 117 catggaggatgagaggaacaccca 140
>gb|DQ058416.1| Rhizobium etli strain 8C-3 plasmid clone REB02, partial sequence Length = 190912 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 gatctcgatcatggaggat 62 ||||||||||||||||||| Sbjct: 32745 gatctcgatcatggaggat 32727
>gb|AC158512.2| Mus musculus BAC clone RP24-319O6 from chromosome 9, complete sequence Length = 171723 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 agaggagcacccactcata 82 ||||||||||||||||||| Sbjct: 18274 agaggagcacccactcata 18256
>gb|AC159892.2| Mus musculus BAC clone RP23-313P23 from chromosome 9, complete sequence Length = 199351 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 tcataccagggagctgagg 96 ||||||||||||||||||| Sbjct: 126117 tcataccagggagctgagg 126099
>gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence Length = 194229 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 tcgatcatggaggatgaga 66 ||||||||||||||||||| Sbjct: 153734 tcgatcatggaggatgaga 153752
>gb|AC012404.9| Homo sapiens, clone RP11-39M21, complete sequence Length = 198857 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 gctgaattctctagctccc 20 ||||||||||||||||||| Sbjct: 85322 gctgaattctctagctccc 85304
>gb|AC008883.6| Homo sapiens chromosome 5 clone CTD-2215E18, complete sequence Length = 127144 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 gatcatggaggatgagagg 68 ||||||||||||||||||| Sbjct: 49820 gatcatggaggatgagagg 49802
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ctgcaccgaccgatctcga 51 ||||||||||||||||||| Sbjct: 284689 ctgcaccgaccgatctcga 284671
>gb|AC108805.15| Mus musculus chromosome 9, clone RP23-226G13, complete sequence Length = 242531 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 agaggagcacccactcata 82 ||||||||||||||||||| Sbjct: 110815 agaggagcacccactcata 110833
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 7.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 ccgatcaggtggaggtgac 115 ||||||||||||||||||| Sbjct: 43559 ccgatcaggtggaggtgac 43577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,195,611 Number of Sequences: 3902068 Number of extensions: 1195611 Number of successful extensions: 75154 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75000 Number of HSP's gapped (non-prelim): 149 length of query: 157 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 135 effective length of database: 17,147,199,772 effective search space: 2314871969220 effective search space used: 2314871969220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)