>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 284 SKAAVERRSWGKFXXXXXXXXXXXRLTVVSTEEILLERPRAPGSKAD-EPSASGDPLAMA 460
           SKA   R++W KF             T   ++++ +       SK D       DP  M 
Sbjct: 93  SKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFIT---SKEDLNCQEEEDP--MN 147

Query: 461 SKGGAVLMVCRTCGKKGDHWTSKCPYKD 544
              G  ++ CR C  KGDHWT++CPYKD
Sbjct: 148 KLKGQKIVSCRIC--KGDHWTTRCPYKD 173

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 284 SKAAVERRSWGKFXXXXXXXXXXXRLTVVSTEEILLERPRAPGSKAD-EPSASGDPLAMA 460
           SKA   R++W KF             T   ++++ +       SK D       DP  M 
Sbjct: 93  SKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFIT---SKEDLNCQEEEDP--MN 147

Query: 461 SKGGAVLMVCRTCGKKGDHWTSKCPYKD 544
              G  ++ CR C  KGDHWT++CPYKD
Sbjct: 148 KLKGQKIVSCRIC--KGDHWTTRCPYKD 173

>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 39.3 bits (90), Expect(2) = 0.001
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +2

Query: 290 AAVERRSWGKFXXXXXXXXXXXRLTVVSTEEILLERPRA-PGSKADEPSASGDPLAMASK 466
           A  ER+ W KF             T    E + L        +K +E   +    A    
Sbjct: 64  AVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKA 123

Query: 467 GGAVLMVCRTCGKKGDHWTSKCPYKDL 547
            G+ ++ CR C  KG+H+T++CPYK +
Sbjct: 124 KGSSVVRCRAC--KGNHFTAQCPYKSI 148



 Score = 22.3 bits (46), Expect(2) = 0.001
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 157 PRVVIGPDENGFKKTIEYRFDDDG 228
           P +    + +G K  IE+R DD+G
Sbjct: 20  PSIQTFDNPDGTKTMIEFRIDDNG 43

>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 36.2 bits (82), Expect = 0.076
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +2

Query: 287 KAAVERRSWGKFXXXXXXXXXXXRLTVVSTEEILLERPRAPGSKADEPSASGDPLAMASK 466
           K+  ER++W K+            +T    EE+ L   R    +A+E     +  ++   
Sbjct: 47  KSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSRN-WKQAEEERIQKEKASLTKT 105

Query: 467 GGAVLMVCRTCGKKGDHWTSKCPYKDL 547
           G    + CR CG   DH T  CP+K +
Sbjct: 106 G----LQCRLCGN--DHMTMNCPFKTI 126

>ODO2_BARVB (Q8GCY1) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
           (E2) (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 411

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = -2

Query: 489 QTMRTAPPLLAIASGSPEALGSSALLPGARGRSRRISSV---ETTVRRAEASSPLAA 328
           Q ++T+PP ++ +S +P ++ SSA+ P    R  R+      +T  RR + +   AA
Sbjct: 150 QGVKTSPPAVSASSSTPVSVSSSAVAPVQEMREERVRMTKLRQTIARRLKDAQNTAA 206

>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/85 (27%), Positives = 34/85 (40%)
 Frame = +2

Query: 287 KAAVERRSWGKFXXXXXXXXXXXRLTVVSTEEILLERPRAPGSKADEPSASGDPLAMASK 466
           K   +R+ W KF             T    EE+ ++  R   ++A E           +K
Sbjct: 58  KVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTR---NRAGEQILDVQEDKQTAK 114

Query: 467 GGAVLMVCRTCGKKGDHWTSKCPYK 541
             +    CR C K  DHW++ CPYK
Sbjct: 115 TTS-REHCRHC-KGNDHWSTHCPYK 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,436,991
Number of Sequences: 219361
Number of extensions: 790104
Number of successful extensions: 2910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2906
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)