ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19b02 |
|---|---|
| Clone Library Name | barley_pub |
>DHN4_HORVU (P12949) Dehydrin DHN4 (B18)| Length = 225 Score = 105 bits (262), Expect = 9e-23 Identities = 51/99 (51%), Positives = 51/99 (51%) Frame = +2 Query: 86 MEYQGQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRX 265 MEYQGQQHGRVDEYGNP YQPMRDEHQTGRGILHR Sbjct: 1 MEYQGQQHGRVDEYGNPVAGHGVGTGMGTHGGVGTGAAAGGHYQPMRDEHQTGRGILHRS 60 Query: 266 XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQHN 382 EDDGMG LPGGHGDQQHN Sbjct: 61 GSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHGDQQHN 99
>DHN3_HORVU (P12948) Dehydrin DHN3 (B17)| Length = 161 Score = 62.8 bits (151), Expect = 7e-10 Identities = 34/93 (36%), Positives = 37/93 (39%) Frame = +2 Query: 98 GQQHGRVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGILHRXXXXX 277 G RVDEYGNP +QP R+EH+ G GIL R Sbjct: 4 GHATNRVDEYGNPVAGHGVGTGMGAHGGVGTGAAAGGHFQPTREEHKAG-GILQRSGSSS 62 Query: 278 XXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQ 376 EDDGMG LPGGHGDQQ Sbjct: 63 SSSSEDDGMGGRRKKGLKDKIKEKLPGGHGDQQ 95
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 57.8 bits (138), Expect = 2e-08 Identities = 41/115 (35%), Positives = 46/115 (40%), Gaps = 17/115 (14%) Frame = +2 Query: 86 MEY--QGQQ-HGR---VDEYGNPXXXXXXXXXXXXXXXXXX-----------XXXXXXXY 214 MEY QGQ+ HGR VD+YGNP + Sbjct: 1 MEYGQQGQRGHGRTGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQF 60 Query: 215 QPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 379 QP R+EH+TG GILHR EDDGMG LPGGH D QH Sbjct: 61 QPAREEHKTG-GILHRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGHKDDQH 114
>DHR21_ORYSA (P12253) Water stress-inducible protein Rab21| Length = 172 Score = 54.3 bits (129), Expect = 3e-07 Identities = 40/123 (32%), Positives = 47/123 (38%), Gaps = 25/123 (20%) Frame = +2 Query: 86 MEYQGQQHG----RVDEYGNPXXXXX--------------------XXXXXXXXXXXXXX 193 ME+QGQ HG RVDEYGNP Sbjct: 1 MEHQGQ-HGHVTSRVDEYGNPVGTGAGHGQMGTAGMGTHGTTGGMGTHGTTGGMGTHGTT 59 Query: 194 XXXXXXYQPMRDEHQTGRGILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH-GD 370 +QPMR+EH+TG G+L R EDDGMG LPGG+ G+ Sbjct: 60 GTGGGQFQPMREEHKTG-GVLQRSGSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGE 118 Query: 371 QQH 379 QQH Sbjct: 119 QQH 121
>DH16B_ORYSA (P22911) Dehydrin Rab16B| Length = 164 Score = 45.8 bits (107), Expect = 9e-05 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%) Frame = +2 Query: 92 YQGQQHG----RVDEYGNPXXXXXXXXXXXX--------XXXXXXXXXXXXXYQPMRDEH 235 YQGQ HG RVD YGNP +QP R++H Sbjct: 4 YQGQ-HGYGADRVDVYGNPVGAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDH 62 Query: 236 QTGRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGDQQH 379 +TG GILHR EDDGMG LPGG+ H Sbjct: 63 KTG-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNH 110
>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)| Length = 143 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/107 (31%), Positives = 40/107 (37%), Gaps = 9/107 (8%) Frame = +2 Query: 86 MEYQGQQH----GRVDEYGNPXXXXXXXXXX-XXXXXXXXXXXXXXXYQPMRDEHQTGRG 250 MEYQGQ +V+EYG P QP RD+H+T G Sbjct: 1 MEYQGQTGHATTDKVEEYGQPVAGHGGATGGPTGTHGAAAAAAGTGQLQPTRDDHKTD-G 59 Query: 251 ILHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG-HGD---QQH 379 +L R EDDG+G LPGG H D QQH Sbjct: 60 VLRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGGAHKDAAGQQH 106
>DH16C_ORYSA (P22912) Dehydrin Rab16C| Length = 164 Score = 45.1 bits (105), Expect = 2e-04 Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 11/102 (10%) Frame = +2 Query: 92 YQGQQHG----RVDEYGNPXXXXXXXXXXX------XXXXXXXXXXXXXXYQPMRDEHQT 241 YQGQ HG RVD YGNP +QP+++EH+T Sbjct: 4 YQGQ-HGYGADRVDVYGNPVAGQYGGGATAPGGGHGVMGMGGHHAGAGGQFQPVKEEHKT 62 Query: 242 GRGILHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 364 G GILHR EDDGMG LPGG+ Sbjct: 63 G-GILHRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 103
>DHR15_WHEAT (Q00742) Dehydrin Rab15| Length = 149 Score = 41.2 bits (95), Expect = 0.002 Identities = 34/103 (33%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Frame = +2 Query: 86 MEYQGQQHG---RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGIL 256 ME+QGQ RVDEYGNP P R IL Sbjct: 1 MEFQGQHDNPANRVDEYGNPFPLAGAWGERTRSRHRRAV--------PGPQGRAQDRWIL 52 Query: 257 HRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGHGD-QQH 379 HR EDDGMG LPGGH D QQH Sbjct: 53 HRSGSSSSSSSSEDDGMGGRRKKGMKEKIKEKLPGGHKDNQQH 95
>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)| Length = 139 Score = 39.7 bits (91), Expect = 0.006 Identities = 30/96 (31%), Positives = 35/96 (36%), Gaps = 4/96 (4%) Frame = +2 Query: 86 MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 253 MEYQGQ HG +V+EYG P Q RD H+T G+ Sbjct: 1 MEYQGQ-HGHATDKVEEYGQPVAGHGGFTGGPTGTHGAAGVGGAQL-QATRDGHKTD-GV 57 Query: 254 LHRXXXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGG 361 L R EDDG+G LPGG Sbjct: 58 LRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEKLPGG 93
>DH16D_ORYSA (P22913) Dehydrin Rab16D| Length = 151 Score = 37.7 bits (86), Expect = 0.024 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Frame = +2 Query: 86 MEYQGQQHG----RVDEYGNPXXXXXXXXXXXXXXXXXXXXXXXXXYQPMRDEHQTGRGI 253 MEYQGQ G R DE+GNP +P R++ +T G+ Sbjct: 1 MEYQGQHGGHASSRADEHGNPAVTTGNAPTGMGAGHIQ---------EPAREDKKTD-GV 50 Query: 254 LHRX-XXXXXXXXEDDGMGXXXXXXXXXXXXXXLPGGH 364 L R EDDGMG LPGG+ Sbjct: 51 LRRSGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGN 88
>US08_HCMVA (P09730) Unique short US8 glycoprotein precursor (gpUS8) (HXLF4)| Length = 227 Score = 33.5 bits (75), Expect = 0.46 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 578 GLAARRCRRWPRCHVPRCRPSQCGLAVRRCRQWLPS 471 G + RR R+W R H P C + AV R RQW+P+ Sbjct: 97 GWSGRRGRKWGRLHAPECL-VETTEAVFRLRQWVPT 131
>ACK1_MOUSE (O54967) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1)| (Non-receptor protein tyrosine kinase Ack) (Tyrosine kinase non-receptor protein 2) Length = 1055 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPG---HMAPRPPAAPTGSK 575 P P PT RV L AP+ + T WP P + PR P +P GS+ Sbjct: 759 PIPPRPTRPRVELS-------PAPSGEEETSRWPGPASPPRVPPREPLSPQGSR 805
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 30.8 bits (68), Expect = 3.0 Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 9/80 (11%) Frame = -2 Query: 581 CGLAARRCRRWPRCHVPRCRPSQCGLAVRRCRQWLPSRSS---------QCDXXXXXXXX 429 CG RCR W RC PS A+ CR +P R+S C Sbjct: 1103 CGSDMWRCRGWHGMPQVRCTPSNAHAAL--CRTGVPPRASTRGGELDPNTCWLRAAANVA 1160 Query: 428 XXXCQYPAVRSRRCQRCAAG 369 A S C +CA G Sbjct: 1161 QAARACGAYTSAGCPKCAYG 1180
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 30.4 bits (67), Expect = 3.9 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 10/57 (17%) Frame = -3 Query: 562 GAAGGRGAMCPGA--GHPSV------ALLYVGAVSG--SHPGHPSVTLLPVGSAGAG 422 G GGRGA+ PG GHP ++ +GAV G G P + LP GS GAG Sbjct: 149 GFPGGRGALGPGGPLGHPGEKGEKGNSVFILGAVKGIQGDRGDPGLPGLP-GSWGAG 204
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 13/64 (20%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWP-------------APGHMAPRPPAAP 563 P P PTG + LG PG K ++G+P PG PR P Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGP 916 Query: 564 TGSK 575 TG + Sbjct: 917 TGPR 920
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 13/64 (20%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWP-------------APGHMAPRPPAAP 563 P P PTG + LG PG K ++G+P PG PR P Sbjct: 857 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGP 916 Query: 564 TGSK 575 TG + Sbjct: 917 TGPR 920
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 13/64 (20%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWP-------------APGHMAPRPPAAP 563 P P PTG + LG PG K ++G+P PG PR P Sbjct: 855 PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGP 914 Query: 564 TGSK 575 TG + Sbjct: 915 TGPR 918
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 30.0 bits (66), Expect = 5.0 Identities = 23/80 (28%), Positives = 26/80 (32%), Gaps = 9/80 (11%) Frame = -2 Query: 581 CGLAARRCRRWPRCHVPRCRPSQCGLAVRRCRQWLPSRSS---------QCDXXXXXXXX 429 CG RCR W RC PS A+ CR +P R S C Sbjct: 1104 CGSDMWRCRGWQGMPQVRCTPSNAHAAL--CRTGVPPRVSTRGGELDPNTCWLRAAANVA 1161 Query: 428 XXXCQYPAVRSRRCQRCAAG 369 A S C +CA G Sbjct: 1162 QAARACGAYTSAGCPKCAYG 1181
>CN032_PONPY (Q5R623) Protein C14orf32 homolog| Length = 245 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPGHM-APRPPAAP 563 PA A P G ++ W P Y + +P+PG AP PP AP Sbjct: 136 PAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAP 183
>CN032_MACFA (Q4R837) Protein C14orf32 homolog| Length = 245 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPGHM-APRPPAAP 563 PA A P G ++ W P Y + +P+PG AP PP AP Sbjct: 136 PAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAP 183
>CN032_HUMAN (Q8NDC0) Protein C14orf32| Length = 245 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPGHM-APRPPAAP 563 PA A P G ++ W P Y + +P+PG AP PP AP Sbjct: 136 PAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAP 183
>CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog| Length = 240 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPGHM-APRPPAAP 563 PA A P G ++ W P Y + +P+PG AP PP AP Sbjct: 131 PAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAP 178
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 29.6 bits (65), Expect = 6.6 Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Frame = -2 Query: 572 AARRCRRW---PRCHVPRCRPSQCGLAVRRCRQWLPSRSSQCDXXXXXXXXXXXCQ---- 414 A R C R PRC + C P G A+ LP ++CD Sbjct: 1990 ACRGCLRHTTGPRCEI--CAPGFYGNAL------LPGNCTRCDCTPCGTEACDPHSGHCL 2041 Query: 413 -YPAVRSRRCQRCAAGHRGHQG 351 V RRC RC GH G G Sbjct: 2042 CKAGVTGRRCDRCQEGHFGFNG 2063
>MUCDL_HUMAN (Q9HBB8) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 845 Score = 29.6 bits (65), Expect = 6.6 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 Query: 474 WEPLTAPTYSKATLGWPAPGHMAPRPPAAPTGS 572 W P+ +PT+ P P AP PA+P G+ Sbjct: 726 WAPVPSPTHDPKPAEAPMPAEPAPPGPASPGGA 758
>LAMA_DROME (Q00174) Laminin alpha chain precursor| Length = 3712 Score = 29.6 bits (65), Expect = 6.6 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Frame = -2 Query: 530 RCRPS----QCGLAVRRCRQWLPSRSSQCDXXXXXXXXXXXCQYPAVRSRRCQRCAAGH 366 RC+P + G+ R C S S+QCD V R+C RCA H Sbjct: 2000 RCKPDHYGFESGVGCRACDCGAASNSTQCDPHTGHCACKS-----GVTGRQCDRCAVDH 2053
>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)| Length = 1032 Score = 29.6 bits (65), Expect = 6.6 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Frame = +3 Query: 423 PAPAEPT----GSRV------TLG*PGWEPLTAPTYSKATLGWPAPGHMAPRPPAAP 563 P P +P+ GS+V TL PG PL P Y L P P + +PP P Sbjct: 156 PRPPQPSILQPGSQVLPPPPTTLNGPGASPLPLPMYRPDGLSGPPPPNAQYQPPPLP 212
>PAQR4_HUMAN (Q8N4S7) Progestin and adipoQ receptor family member 4 (Progestin| and adipoQ receptor family member IV) Length = 273 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Frame = +3 Query: 420 WPAPAEPTGSRVTLG*PGWEPLTAPTYSK--ATLGWPAPGHM 539 W PA G V G GW LTAP+ S GW A + Sbjct: 144 WLRPAALVGYTVLSGVAGWRALTAPSTSARLRAFGWQAAARL 185
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 29.3 bits (64), Expect = 8.6 Identities = 17/33 (51%), Positives = 18/33 (54%) Frame = +3 Query: 468 PGWEPLTAPTYSKATLGWPAPGHMAPRPPAAPT 566 P EP+TAPT S A AP A PPA PT Sbjct: 342 PAPEPVTAPTPSPA----DAPSPTAASPPAPPT 370
>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine| kinase non-receptor protein 2) Length = 1036 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*PGWEPLTAPTYSKATLGWPAPG---HMAPRPPAAPTGSK 575 P P PT V L AP + T WP P + PR P +P GS+ Sbjct: 743 PIPPRPTRPHVQLS-------PAPPGEEETSQWPGPASPPRVPPREPLSPQGSR 789
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 29.3 bits (64), Expect = 8.6 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Frame = +3 Query: 423 PAPAEPTGSRVTLG*-------PGWEPLTAPTYSKATLGWPAPGHMAPRPPAAPTGS 572 PAPA G R T G P TAP + A PAP P+P A G+ Sbjct: 117 PAPAPSQGPRPTPGPKPAPRPAPAAPEFTAPPAAPAAPSTPAPAPSGPKPGGARPGA 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,336,101 Number of Sequences: 219361 Number of extensions: 913058 Number of successful extensions: 4050 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4025 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
