ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart19a05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA Length = 1059 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
>ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 942 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 3907430 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3907481 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 3857551 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3857602 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 3904521 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 3904580 Query: 153 aagaccgt 160 |||||||| Sbjct: 3904581 aagaccgt 3904588 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 3892698 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 3892757 Query: 153 aagaccgt 160 |||||||| Sbjct: 3892758 aagaccgt 3892765 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 3854642 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 3854701 Query: 153 aagaccgt 160 |||||||| Sbjct: 3854702 aagaccgt 3854709 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 cgccggcgtgaaggagccaccgagccagtac 139 |||||||||| ||||||||||||||| |||| Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474 Score = 44.1 bits (22), Expect = 0.27 Identities = 40/46 (86%) Strand = Plus / Plus Query: 180 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 225 ||||||| || ||||||||||| | |||||| ||| |||||||||| Sbjct: 3911512 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 3911557
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 13306 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 13357 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 10397 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 10456 Query: 153 aagaccgt 160 |||||||| Sbjct: 10457 aagaccgt 10464 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 cgccggcgtgaaggagccaccgagccagtac 139 |||||||||| ||||||||||||||| |||| Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350 Score = 44.1 bits (22), Expect = 0.27 Identities = 40/46 (86%) Strand = Plus / Plus Query: 180 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 225 ||||||| || ||||||||||| | |||||| ||| |||||||||| Sbjct: 17388 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 17433
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 178 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 229 |||||| ||||| |||||||||||| || ||||||||||||||||||||||| Sbjct: 115505 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 115556 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 150652 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 150711 Query: 153 aagaccgt 160 |||||||| Sbjct: 150712 aagaccgt 150719 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 112596 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 112655 Query: 153 aagaccgt 160 |||||||| Sbjct: 112656 aagaccgt 112663
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 35 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 94 Query: 153 aagaccgt 160 |||||||| Sbjct: 95 aagaccgt 102
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 48.1 bits (24), Expect = 0.018 Identities = 57/68 (83%) Strand = Plus / Plus Query: 93 tgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttccggagc 152 |||||||||||| | |||||||| ||||||||||||| | |||||||||| |||| Sbjct: 35 tgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttggggaga 94 Query: 153 aagaccgt 160 |||||||| Sbjct: 95 aagaccgt 102
>ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1065 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 cgccggcgtgaaggagccaccgagccagtac 139 |||||||||| ||||||||||||||| |||| Sbjct: 48 cgccggcgtgcaggagccaccgagccggtac 78 Score = 44.1 bits (22), Expect = 0.27 Identities = 40/46 (86%) Strand = Plus / Plus Query: 180 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 225 ||||||| || ||||||||||| | |||||| ||| |||||||||| Sbjct: 116 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 161
>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full insert sequence Length = 1303 Score = 46.1 bits (23), Expect = 0.070 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 cgccggcgtgaaggagccaccgagccagtac 139 |||||||||| ||||||||||||||| |||| Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173 Score = 44.1 bits (22), Expect = 0.27 Identities = 40/46 (86%) Strand = Plus / Plus Query: 180 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 225 ||||||| || ||||||||||| | |||||| ||| |||||||||| Sbjct: 211 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 256
>gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA Length = 3809 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 cgagcccatccccatcatcga 210 ||||||||||||||||||||| Sbjct: 1397 cgagcccatccccatcatcga 1417
>ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mRNA, complete cds Length = 3791 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 cgagcccatccccatcatcga 210 ||||||||||||||||||||| Sbjct: 1408 cgagcccatccccatcatcga 1428
>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone BACR26A07, complete sequence Length = 172436 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgagcccatccccatcatcga 210 ||||||||||||||||||||| Sbjct: 170384 cgagcccatccccatcatcga 170364
>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone BACR03G07, complete sequence Length = 170064 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgagcccatccccatcatcga 210 ||||||||||||||||||||| Sbjct: 58306 cgagcccatccccatcatcga 58286
>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete sequence Length = 304674 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 cgagcccatccccatcatcga 210 ||||||||||||||||||||| Sbjct: 81523 cgagcccatccccatcatcga 81503
>gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome 13, complete sequence Length = 205164 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 cttatgaccaacaattcaagg 71 ||||||||||||||||||||| Sbjct: 98174 cttatgaccaacaattcaagg 98154
>ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protein; DOS/Gab family member 3 (LOC428717), mRNA Length = 2973 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 agcccatccccatcatcgacctca 215 ||||||||| |||||||||||||| Sbjct: 1376 agcccatccgcatcatcgacctca 1399
>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete sequence Length = 231142 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 agcccatccccatcatcgacctca 215 ||||||||| |||||||||||||| Sbjct: 67835 agcccatccgcatcatcgacctca 67858
>emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for KvLQT1 voltage-gated delayed rectifier potassium channel (kvLQT1 gene) Length = 463 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 agcccatccccatcatcgacctca 215 |||||||| ||||||||||||||| Sbjct: 134 agcccatctccatcatcgacctca 157 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,032,972 Number of Sequences: 3902068 Number of extensions: 2032972 Number of successful extensions: 33325 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33266 Number of HSP's gapped (non-prelim): 59 length of query: 325 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 303 effective length of database: 17,147,199,772 effective search space: 5195601530916 effective search space used: 5195601530916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
