>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 266 GAALGGEPEDALVPGDGRGEQSRKGH 189
           G+ L G  EDA  P   RGEQ R+GH
Sbjct: 599 GSGLSGTREDAGSPSARRGEQRRRGH 624

>ZN446_HUMAN (Q9NWS9) Zinc finger protein 446|
          Length = 450

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 25/98 (25%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
 Frame = +3

Query: 99  CRVLETTSEDQGPPNAVLLTQDDQSDAAAEVTLPALLTPAVAGDEGVLRLPSQRRP---- 266
           CR L + +E +GPP             AA   L    TPA     G   +P+Q  P    
Sbjct: 262 CRSLRSGNESEGPPGCPEAQPPQGPGPAAWEGLSGAATPAPTVRPGTPPVPTQPTPAETR 321

Query: 267 ------------CXXXXXXXXXXXXGISHHRGAFSGPG 344
                       C             + HHR   SGPG
Sbjct: 322 LEPAATPRKPYTCEQCGRGFDWKSVFVIHHRTHTSGPG 359

>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)|
          Length = 657

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = -1

Query: 190 TSAAASD*SSWVRRTALGGPWSSEVVSRTR 101
           T+AA  + ++ VRRTA G   +S+VVS TR
Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTTR 415

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 313 EMPWWCAHXXXXXXXXXXXXXXXXRTPSSPATAGVSRAGRVTSAAAS 173
           E PW  +                  + SSPA A VS  G  +S AAS
Sbjct: 511 EQPWSSSSSRAIQPATTSASSSSSSSASSPAAAVVSAIGSASSPAAS 557


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,389,336
Number of Sequences: 219361
Number of extensions: 583133
Number of successful extensions: 1649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)