ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart18h06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197709.1| Oryza sativa (japonica cultivar-group) putative transcription factor (OSJNBa0010C11.4), mRNA Length = 1358 Score = 184 bits (93), Expect = 2e-43 Identities = 168/193 (87%) Strand = Plus / Plus Query: 382 tgggcgagctgtcggccaccaccccttccgccacgtcgtccgatcaccagacgtcgatgc 441 ||||||||| ||||| | |||| || || ||||||||||| ||||||||||||||||||| Sbjct: 520 tgggcgagccgtcgggcgccacgccgtcggccacgtcgtcagatcaccagacgtcgatgc 579 Query: 442 tctctttcgccgacgagttctacatacccagcgaggaagccgcagagctcgaatggctgt 501 |||| ||||||||||| ||||||||||||| |||||| || || ||||| || ||||| | Sbjct: 580 tctccttcgccgacgacttctacatacccaccgaggacgctgccgagctggagtggctat 639 Query: 502 ccaagttcgtggacgactcctactcggacatgccgaattactcatcggctgcgcatgcgg 561 |||||||||| |||||||||||||| ||||||||||||||| ||| | ||||| || | Sbjct: 640 ccaagttcgtcgacgactcctactccgacatgccgaattaccagtcgtccgcgcacgccg 699 Query: 562 caatggcggcggc 574 ||||||||||||| Sbjct: 700 caatggcggcggc 712 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 102 atggcgtcggagtgggaaatggccatgggcgtggagctcggcatgggaatgggatcgtac 161 |||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||| Sbjct: 195 atggcgtcggagtgggaaatggccatgggcgtcgacctcggcatggggatgagcacgtac 254 Query: 162 cacaacgcc 170 ||||||||| Sbjct: 255 cacaacgcc 263 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ggcgcccacgacttcttccc 331 |||||||||||||||||||| Sbjct: 435 ggcgcccacgacttcttccc 454
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 382 tgggcgagctgtcggccaccaccccttccgccacgtcgtccgatcaccagacgtcgatgc 441 ||||||||| ||||| | |||| || || ||||||||||| ||||||||||||||||||| Sbjct: 99717 tgggcgagccgtcgggcgccacgccgtcggccacgtcgtcagatcaccagacgtcgatgc 99776 Query: 442 tctctttcgccgacgagttctacataccc 470 |||| ||||||||||| |||||||||||| Sbjct: 99777 tctccttcgccgacgacttctacataccc 99805 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 102 atggcgtcggagtgggaaatggccatgggcgtggagctcggcatgggaatgggatcgtac 161 |||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||| Sbjct: 99392 atggcgtcggagtgggaaatggccatgggcgtcgacctcggcatggggatgagcacgtac 99451 Query: 162 cacaacgcc 170 ||||||||| Sbjct: 99452 cacaacgcc 99460 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 473 cgaggaagccgcagagctcgaatggctgtccaagttcgtggacgactcctactcggacat 532 |||||| || || ||||| || ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 99989 cgaggacgctgccgagctggagtggctatccaagttcgtcgacgactcctactccgacat 100048 Query: 533 gccgaattactcatcggctgcgcatgcggcaatggcggcggc 574 |||||||||| ||| | ||||| || |||||||||||||| Sbjct: 100049 gccgaattaccagtcgtccgcgcacgccgcaatggcggcggc 100090 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ggcgcccacgacttcttccc 331 |||||||||||||||||||| Sbjct: 99632 ggcgcccacgacttcttccc 99651
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 382 tgggcgagctgtcggccaccaccccttccgccacgtcgtccgatcaccagacgtcgatgc 441 ||||||||| ||||| | |||| || || ||||||||||| ||||||||||||||||||| Sbjct: 21424704 tgggcgagccgtcgggcgccacgccgtcggccacgtcgtcagatcaccagacgtcgatgc 21424763 Query: 442 tctctttcgccgacgagttctacataccc 470 |||| ||||||||||| |||||||||||| Sbjct: 21424764 tctccttcgccgacgacttctacataccc 21424792 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 102 atggcgtcggagtgggaaatggccatgggcgtggagctcggcatgggaatgggatcgtac 161 |||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||| Sbjct: 21424379 atggcgtcggagtgggaaatggccatgggcgtcgacctcggcatggggatgagcacgtac 21424438 Query: 162 cacaacgcc 170 ||||||||| Sbjct: 21424439 cacaacgcc 21424447 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 473 cgaggaagccgcagagctcgaatggctgtccaagttcgtggacgactcctactcggacat 532 |||||| || || ||||| || ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 21424976 cgaggacgctgccgagctggagtggctatccaagttcgtcgacgactcctactccgacat 21425035 Query: 533 gccgaattactcatcggctgcgcatgcggcaatggcggcggc 574 |||||||||| ||| | ||||| || |||||||||||||| Sbjct: 21425036 gccgaattaccagtcgtccgcgcacgccgcaatggcggcggc 21425077 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ggcgcccacgacttcttccc 331 |||||||||||||||||||| Sbjct: 21424619 ggcgcccacgacttcttccc 21424638
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 105 bits (53), Expect = 2e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 382 tgggcgagctgtcggccaccaccccttccgccacgtcgtccgatcaccagacgtcgatgc 441 ||||||||| ||||| | |||| || || ||||||||||| ||||||||||||||||||| Sbjct: 21435967 tgggcgagccgtcgggcgccacgccgtcggccacgtcgtcagatcaccagacgtcgatgc 21436026 Query: 442 tctctttcgccgacgagttctacataccc 470 |||| ||||||||||| |||||||||||| Sbjct: 21436027 tctccttcgccgacgacttctacataccc 21436055 Score = 89.7 bits (45), Expect = 1e-14 Identities = 63/69 (91%) Strand = Plus / Plus Query: 102 atggcgtcggagtgggaaatggccatgggcgtggagctcggcatgggaatgggatcgtac 161 |||||||||||||||||||||||||||||||| || ||||||||||| ||| | ||||| Sbjct: 21435642 atggcgtcggagtgggaaatggccatgggcgtcgacctcggcatggggatgagcacgtac 21435701 Query: 162 cacaacgcc 170 ||||||||| Sbjct: 21435702 cacaacgcc 21435710 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/102 (85%) Strand = Plus / Plus Query: 473 cgaggaagccgcagagctcgaatggctgtccaagttcgtggacgactcctactcggacat 532 |||||| || || ||||| || ||||| ||||||||||| |||||||||||||| ||||| Sbjct: 21436239 cgaggacgctgccgagctggagtggctatccaagttcgtcgacgactcctactccgacat 21436298 Query: 533 gccgaattactcatcggctgcgcatgcggcaatggcggcggc 574 |||||||||| ||| | ||||| || |||||||||||||| Sbjct: 21436299 gccgaattaccagtcgtccgcgcacgccgcaatggcggcggc 21436340 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ggcgcccacgacttcttccc 331 |||||||||||||||||||| Sbjct: 21435882 ggcgcccacgacttcttccc 21435901
>gb|AF305502.1|AF305502 Myoxocephalus scorpius skin-type antifreeze polypeptide AFP-2 mRNA, complete cds Length = 1027 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 558 gcggcaatggcggcggcaaacgcggcg 584 |||||||||||||||||||| |||||| Sbjct: 96 gcggcaatggcggcggcaaatgcggcg 122
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 472 gcgaggaagccgcagagctcga 493 |||||||||||||||||||||| Sbjct: 474493 gcgaggaagccgcagagctcga 474514
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 ccaccagcacctcggcgccgcc 380 |||||||||||||||||||||| Sbjct: 1357006 ccaccagcacctcggcgccgcc 1356985
>ref|NM_208819.1| Eremothecium gossypii ACR064Wp (ACR064W), mRNA Length = 2130 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 472 gcgaggaagccgcagagctcga 493 |||||||||||||||||||||| Sbjct: 1970 gcgaggaagccgcagagctcga 1991
>gb|AC120985.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1532_D06, complete sequence Length = 127150 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 caccaccccttccgccacgtc 418 ||||||||||||||||||||| Sbjct: 93111 caccaccccttccgccacgtc 93131
>ref|XM_475511.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1257 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 ccaccaccccttccgccacgt 417 ||||||||||||||||||||| Sbjct: 40 ccaccaccccttccgccacgt 20
>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01, complete sequence Length = 122768 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccaccaccccttccgccacgt 417 ||||||||||||||||||||| Sbjct: 54876 ccaccaccccttccgccacgt 54896
>gb|AC182676.2| Populus trichocarpa clone Pop1-29E23, complete sequence Length = 62085 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 ctccaccaccaccagcacctc 371 ||||||||||||||||||||| Sbjct: 10813 ctccaccaccaccagcacctc 10833
>ref|XM_958020.1| Neurospora crassa OR74A hypothetical protein (NCU07852.1) partial mRNA Length = 552 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cagcacctcggcgccgccgtg 383 ||||||||||||||||||||| Sbjct: 360 cagcacctcggcgccgccgtg 340
>ref|XM_328557.1| Neurospora crassa OR74A hypothetical protein (NCU07852.1) partial mRNA Length = 552 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 cagcacctcggcgccgccgtg 383 ||||||||||||||||||||| Sbjct: 360 cagcacctcggcgccgccgtg 340
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ctactccgcctccgcggctgc 232 ||||||||||||||||||||| Sbjct: 25376172 ctactccgcctccgcggctgc 25376152
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ctactccgcctccgcggctgc 232 ||||||||||||||||||||| Sbjct: 67188 ctactccgcctccgcggctgc 67208
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 559 cggcaatggcggcggcaaacgcggcgaac 587 |||||||||||| ||||| |||||||||| Sbjct: 85819 cggcaatggcggtggcaaccgcggcgaac 85791
>emb|AL669968.10| Mouse DNA sequence from clone RP23-475F22 on chromosome 11 Contains a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, complete sequence Length = 167170 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 cggactccaccaccaccagcacctc 371 |||||||||||||||||| |||||| Sbjct: 74035 cggactccaccaccaccaccacctc 74059
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 359 ccaccagcacctcggcgccgccgtg 383 |||||||||||| |||||||||||| Sbjct: 11521508 ccaccagcacctaggcgccgccgtg 11521484
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 caccaccccttccgccacgtc 418 ||||||||||||||||||||| Sbjct: 7480042 caccaccccttccgccacgtc 7480062 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccaccaccccttccgccacgt 417 ||||||||||||||||||||| Sbjct: 1099265 ccaccaccccttccgccacgt 1099285
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ctactccgcctccgcggctgc 232 ||||||||||||||||||||| Sbjct: 25467481 ctactccgcctccgcggctgc 25467461
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 359 ccaccagcacctcggcgccgccgtg 383 |||||||||||| |||||||||||| Sbjct: 85166 ccaccagcacctaggcgccgccgtg 85142
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 359 ccaccagcacctcggcgccgccgtg 383 |||||||||||| |||||||||||| Sbjct: 131028 ccaccagcacctaggcgccgccgtg 131004
>gb|AY685117.1| Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds Length = 1539 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 ccaccaccccttccgccacgt 417 ||||||||||||||||||||| Sbjct: 40 ccaccaccccttccgccacgt 20
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete sequence Length = 132371 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 53957 tccaccaccaccagcacctc 53976 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 53438 tccaccaccaccagcacctc 53457 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 53192 tccaccaccaccagcacctc 53211
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 tggcggcggcaaacgcggcg 584 |||||||||||||||||||| Sbjct: 2553810 tggcggcggcaaacgcggcg 2553791
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 tagctcgtactcgtactgga 30 |||||||||||||||||||| Sbjct: 1241416 tagctcgtactcgtactgga 1241435
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 cacaacgccgccaacgtcaa 181 |||||||||||||||||||| Sbjct: 135868 cacaacgccgccaacgtcaa 135849
>ref|XM_361917.1| Magnaporthe grisea 70-15 hypothetical protein (MG04362.4) partial cds Length = 627 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 caccaccaccagcacctcggcgcc 377 ||||||||||||||| |||||||| Sbjct: 127 caccaccaccagcacgtcggcgcc 150
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds Length = 1860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ctccaccaccaccagcacct 370 |||||||||||||||||||| Sbjct: 1829 ctccaccaccaccagcacct 1848
>ref|XM_713714.1| Candida albicans SC5314 putative COPII vesicle coat component (CaO19_6217), mRNA Length = 3798 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ctccaccaccaccagcacct 370 |||||||||||||||||||| Sbjct: 3248 ctccaccaccaccagcacct 3267
>ref|XM_713631.1| Candida albicans SC5314 putative COPII vesicle coat component (CaO19_13598), mRNA Length = 3798 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ctccaccaccaccagcacct 370 |||||||||||||||||||| Sbjct: 3248 ctccaccaccaccagcacct 3267
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds Length = 2562 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ctccaccaccaccagcacct 370 |||||||||||||||||||| Sbjct: 2091 ctccaccaccaccagcacct 2110
>emb|Z69904.1|CEZK20 Caenorhabditis elegans Cosmid ZK20, complete sequence Length = 33490 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 4048 tccaccaccaccagcacctc 4029
>ref|XM_571387.1| Cryptococcus neoformans var. neoformans JEC21 histone deacetylation-related protein (CNF04280) partial mRNA Length = 5149 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tagctcgtactcgtactgga 30 |||||||||||||||||||| Sbjct: 4182 tagctcgtactcgtactgga 4163
>gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome 18, complete sequence Length = 201282 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ctccaccaccaccagcacct 370 |||||||||||||||||||| Sbjct: 42616 ctccaccaccaccagcacct 42597
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 558 gcggcaatggcggcggcaaacgcg 581 |||| ||||||||||||||||||| Sbjct: 5179489 gcggtaatggcggcggcaaacgcg 5179512
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 558 gcggcaatggcggcggcaaacgcg 581 |||| ||||||||||||||||||| Sbjct: 4968272 gcggtaatggcggcggcaaacgcg 4968295
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 accagcacctcggcgccgcc 380 |||||||||||||||||||| Sbjct: 347877 accagcacctcggcgccgcc 347896
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 accagcacctcggcgccgcc 380 |||||||||||||||||||| Sbjct: 237062 accagcacctcggcgccgcc 237043
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 accagcacctcggcgccgcc 380 |||||||||||||||||||| Sbjct: 262760 accagcacctcggcgccgcc 262741
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 cagcacctcggcgccgccgtgggc 386 |||||||||||||||||| ||||| Sbjct: 193554 cagcacctcggcgccgccctgggc 193531
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 ggcggcggcaaacgcggcga 585 |||||||||||||||||||| Sbjct: 3969670 ggcggcggcaaacgcggcga 3969651
>dbj|AB230832.1| Aspergillus oryzae cDNA, contig sequence: AoEST9019 Length = 850 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgggatgcagcccatgcgcg 264 |||||||||||||||||||| Sbjct: 697 cgggatgcagcccatgcgcg 716
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgggatgcagcccatgcgcg 264 |||||||||||||||||||| Sbjct: 548493 cgggatgcagcccatgcgcg 548474
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 caccaccagcacctcggcgccgcc 380 ||||||| |||||||||||||||| Sbjct: 791154 caccaccggcacctcggcgccgcc 791131
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cgctcttctggggcgtggaa 102 |||||||||||||||||||| Sbjct: 2014473 cgctcttctggggcgtggaa 2014492
>gb|AY056469.1| Petromyzon marinus homeobox protein hox4x mRNA, partial cds Length = 1146 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ccaccaccaccagcacctcg 372 |||||||||||||||||||| Sbjct: 102 ccaccaccaccagcacctcg 121
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ccaccagcacctcggcgccg 378 |||||||||||||||||||| Sbjct: 2580124 ccaccagcacctcggcgccg 2580105
>ref|NM_001026897.2| Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds Length = 6751 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 3325 tccaccaccaccagcacctc 3344
>ref|NM_064084.3| Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds Length = 7247 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 3821 tccaccaccaccagcacctc 3840
>ref|NM_064083.3| Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds Length = 6659 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 3821 tccaccaccaccagcacctc 3840
>ref|NM_182101.2| Caenorhabditis elegans DAF-12 Interacting Protein family member (din-1) (din-1) mRNA, complete cds Length = 7629 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tccaccaccaccagcacctc 371 |||||||||||||||||||| Sbjct: 3753 tccaccaccaccagcacctc 3772
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 cgccgccaacgtcaacgccgcgcccatg 194 ||||||||||| ||||||||||| |||| Sbjct: 29820475 cgccgccaacgccaacgccgcgctcatg 29820448
>gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, region 99D-99D, BAC clone BACR07A18, complete sequence Length = 168469 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggagctcggcatgggaatg 152 |||||||||||||||||||| Sbjct: 129942 tggagctcggcatgggaatg 129961
>gb|AY161023.1| Sciaenops ocellatus clone SOC 421 microsatellite sequence Length = 607 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 aacggactccaccaccaccagcac 368 ||||| |||||||||||||||||| Sbjct: 483 aacggcctccaccaccaccagcac 506
>ref|NM_001011493.1| Xenopus tropicalis hypothetical LOC496993 (LOC496993), mRNA Length = 1005 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aacggactccaccaccaccagcac 368 ||||||||||| |||||||||||| Sbjct: 642 aacggactccatcaccaccagcac 619
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 ggccaccaccccttccgccacgtc 418 |||||||||||||||| ||||||| Sbjct: 24492 ggccaccaccccttcctccacgtc 24469
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 167 cgccgccaacgtcaacgccgcgcccatg 194 ||||||||||| ||||||||||| |||| Sbjct: 15988 cgccgccaacgccaacgccgcgctcatg 15961
>gb|AY646856.2| Sapovirus NongKhai-24/Thailand, complete genome Length = 7500 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 125 catgggcgtggagctcggcatggg 148 ||||||||||||||||| |||||| Sbjct: 2865 catgggcgtggagctcgtcatggg 2888
>gb|AY108045.1| Zea mays PCO088666 mRNA sequence Length = 871 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 tcggccaccaccccttccgccacg 416 |||||||||||||||||| ||||| Sbjct: 606 tcggccaccaccccttccaccacg 583
>gb|AE003772.2| Drosophila melanogaster chromosome 3R, section 110 of 118 of the complete sequence Length = 228443 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tggagctcggcatgggaatg 152 |||||||||||||||||||| Sbjct: 43510 tggagctcggcatgggaatg 43529
>gb|BC088882.1| Xenopus tropicalis hypothetical LOC496993, mRNA (cDNA clone MGC:108052 IMAGE:7003349), complete cds Length = 1005 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 aacggactccaccaccaccagcac 368 ||||||||||| |||||||||||| Sbjct: 642 aacggactccatcaccaccagcac 619
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 gcgagctgtcggccaccacc 404 |||||||||||||||||||| Sbjct: 3755891 gcgagctgtcggccaccacc 3755872
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 ggccaccaccccttccgccacgtc 418 |||||||||||||||| ||||||| Sbjct: 1879587 ggccaccaccccttcctccacgtc 1879610 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,872,739 Number of Sequences: 3902068 Number of extensions: 3872739 Number of successful extensions: 90266 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87918 Number of HSP's gapped (non-prelim): 2348 length of query: 587 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 564 effective length of database: 17,143,297,704 effective search space: 9668819905056 effective search space used: 9668819905056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
