Clone Name | bart18g06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_483854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1538 Score = 212 bits (107), Expect = 1e-51 Identities = 274/329 (83%), Gaps = 3/329 (0%) Strand = Plus / Plus Query: 188 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaagac---gaccag 244 ||||||||| |||||| |||||||| |||||||||||||||||||||| || |||||| Sbjct: 309 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaacaccacgaccag 368 Query: 245 gccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgca 304 ||| | || |||||||| || |||||||||| |||||||||||||||||||| |||||| Sbjct: 369 gccgcttcaatgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgca 428 Query: 305 ccatctgccatgcttcctgcaccttcttctgcaaagttaaataagctgctactgccaaaa 364 ||| | || ||| ||||||| |||||| |||||||| | |||||| |||| || || Sbjct: 429 ccaccaccctcgctacctgcacaatcttcttcaaagttagacaagctgttactccctaac 488 Query: 365 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatggatcccatgactctgtt 424 ||||||||||| || || |||||||||||| ||||||| ||||||| ||||| ||| ||| Sbjct: 489 ccatttgacagaccacgggctgttttcttgctgcaaatcgatggattccatgcctccgtt 548 Query: 425 gatagcttcatatctgatgctggtagtgtttacaaaaccaagattgatagtgcaaaaaat 484 || ||| ||| |||||| |||||||| | | |||||||| |||||| || || || Sbjct: 549 gaaagcatcacatctgaagctggtagcatcttcaaaaccactattgatggtctaagcgat 608 Query: 485 gctgctacagggcttacagataaggatga 513 |||||||||||||||||||||||||||| Sbjct: 609 tctgctacagggcttacagataaggatga 637
>dbj|AK065186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002D24, full insert sequence Length = 1538 Score = 212 bits (107), Expect = 1e-51 Identities = 274/329 (83%), Gaps = 3/329 (0%) Strand = Plus / Plus Query: 188 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaagac---gaccag 244 ||||||||| |||||| |||||||| |||||||||||||||||||||| || |||||| Sbjct: 309 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaacaccacgaccag 368 Query: 245 gccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgca 304 ||| | || |||||||| || |||||||||| |||||||||||||||||||| |||||| Sbjct: 369 gccgcttcaatgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgca 428 Query: 305 ccatctgccatgcttcctgcaccttcttctgcaaagttaaataagctgctactgccaaaa 364 ||| | || ||| ||||||| |||||| |||||||| | |||||| |||| || || Sbjct: 429 ccaccaccctcgctacctgcacaatcttcttcaaagttagacaagctgttactccctaac 488 Query: 365 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatggatcccatgactctgtt 424 ||||||||||| || || |||||||||||| ||||||| ||||||| ||||| ||| ||| Sbjct: 489 ccatttgacagaccacgggctgttttcttgctgcaaatcgatggattccatgcctccgtt 548 Query: 425 gatagcttcatatctgatgctggtagtgtttacaaaaccaagattgatagtgcaaaaaat 484 || ||| ||| |||||| |||||||| | | |||||||| |||||| || || || Sbjct: 549 gaaagcatcacatctgaagctggtagcatcttcaaaaccactattgatggtctaagcgat 608 Query: 485 gctgctacagggcttacagataaggatga 513 |||||||||||||||||||||||||||| Sbjct: 609 tctgctacagggcttacagataaggatga 637
>gb|AY103941.1| Zea mays PCO095480 mRNA sequence Length = 1596 Score = 83.8 bits (42), Expect = 6e-13 Identities = 101/122 (82%), Gaps = 9/122 (7%) Strand = Plus / Plus Query: 485 gctgctacagggcttacagataaggatgaattgattgtcattcgttcagatgaatct--- 541 |||| |||||||||||||||||||||||| || |||||||||| ||||||||||||| Sbjct: 519 gctgatacagggcttacagataaggatgacttaattgtcattcattcagatgaatctcta 578 Query: 542 ------tctggatcaggtgttcttgataatgaactgaccaacttggcaacctggttggag 595 ||| |||||| | ||||||||||||||| ||| |||||||| |||||||||| Sbjct: 579 gatctctctcgatcagattatcttgataatgaactttccagcttggcaaactggttggag 638 Query: 596 gg 597 || Sbjct: 639 gg 640 Score = 75.8 bits (38), Expect = 1e-10 Identities = 103/124 (83%), Gaps = 3/124 (2%) Strand = Plus / Plus Query: 186 ccgccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa---gacgacc 242 |||||| ||||||||||| | |||||||||||||||| ||||| |||||| ||| ||| Sbjct: 223 ccgccgtcttcatcgatgcctcgtcgcaccgctaccttcgggaccagcaagccgaccacc 282 Query: 243 aggccacgtccatgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttg 302 ||| | | || ||||| | ||||||||||||| | |||||||||||||||||| || | Sbjct: 283 aggacgcttcaatgtcgttaaatgaagtttctgcggttgtttctgtcttgcttggtttcg 342 Query: 303 cacc 306 |||| Sbjct: 343 cacc 346 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 365 ccatttgacaggcctcgtgctgttttcttggtgcaaattgatgg 408 |||||||| || || |||||||||||| | |||||||||||||| Sbjct: 405 ccatttgatagaccgcgtgctgttttcctcgtgcaaattgatgg 448
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 188 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa 235 ||||||||| |||||| |||||||| |||||||||||||||||||||| Sbjct: 28387126 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaa 28387173 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 254 atgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgcacca 307 |||||||| || |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 28387363 atgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgcacca 28387416 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 347 aagctgctactgccaaaaccatttgacaggcctcgtgctgttttcttggtgcaaattgat 406 |||||| |||| || || ||||||||||| || || |||||||||||| ||||||| ||| Sbjct: 28387540 aagctgttactccctaacccatttgacagaccacgggctgttttcttgctgcaaatcgat 28387599 Query: 407 ggatcccatg 416 |||| ||||| Sbjct: 28387600 ggattccatg 28387609
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 188 gccgccttcatcgatggcgcgtcgcaccgctacctgcgggatcagcaa 235 ||||||||| |||||| |||||||| |||||||||||||||||||||| Sbjct: 115932 gccgccttcgtcgatgccgcgtcgcgccgctacctgcgggatcagcaa 115979 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 254 atgtcacttgatgaagtttctgcagctgtttctgtcttgcttggctttgcacca 307 |||||||| || |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 116169 atgtcactagaccaagtttctgcggctgtttctgtcttgcttggttttgcacca 116222 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 347 aagctgctactgccaaaaccatttgacaggcctcgtgctgttttcttggtgcaaattgat 406 |||||| |||| || || ||||||||||| || || |||||||||||| ||||||| ||| Sbjct: 116346 aagctgttactccctaacccatttgacagaccacgggctgttttcttgctgcaaatcgat 116405 Query: 407 ggatcccatg 416 |||| ||||| Sbjct: 116406 ggattccatg 116415
>gb|AF024533.1| Homo sapiens cosmid 123E15, complete sequence Length = 84912 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 ttttcttggtgcaaattgatg 407 ||||||||||||||||||||| Sbjct: 51894 ttttcttggtgcaaattgatg 51914
>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete sequence Length = 214292 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 489 ctacagggcttacagataagg 509 ||||||||||||||||||||| Sbjct: 83347 ctacagggcttacagataagg 83367
>gb|AC005086.2| Homo sapiens BAC clone CTA-305I2 from 7, complete sequence Length = 129586 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttttcttggtgcaaattgatg 407 ||||||||||||||||||||| Sbjct: 122763 ttttcttggtgcaaattgatg 122743
>gb|AC145919.3| Pan troglodytes BAC clone RP43-10A14 from 7, complete sequence Length = 174235 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttttcttggtgcaaattgatg 407 ||||||||||||||||||||| Sbjct: 75729 ttttcttggtgcaaattgatg 75709
>gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chromosome 7, complete sequence Length = 192516 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttttcttggtgcaaattgatg 407 ||||||||||||||||||||| Sbjct: 42538 ttttcttggtgcaaattgatg 42518
>gb|AC096679.3| Pan troglodytes clone RP43-142I13, complete sequence Length = 194020 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 ttttcttggtgcaaattgatg 407 ||||||||||||||||||||| Sbjct: 110447 ttttcttggtgcaaattgatg 110427
>emb|AL357614.5|HS367B10 Homo sapiens chromosome 9 BAC RP11-367B10, complete sequence Length = 182378 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 333 ctgcaaagttaaataagctgc 353 ||||||||||||||||||||| Sbjct: 139516 ctgcaaagttaaataagctgc 139496
>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete sequence Length = 238934 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 285 ctgtcttgcttggctttgcaccatc 309 ||||||| ||||||||||||||||| Sbjct: 143501 ctgtcttacttggctttgcaccatc 143525
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 tgatgctggtagtgtttaca 458 |||||||||||||||||||| Sbjct: 5464 tgatgctggtagtgtttaca 5445
>emb|CR942271.10| Human DNA sequence from clone DAMC-325F20 on chromosome 6, complete sequence Length = 52666 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 2300 tgttcttgataatgaactga 2281
>gb|AF211176.2| Botryotinia fuckeliana cystathionine beta-lyase (metC) gene, complete cds Length = 2921 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ttgatgaagtttctgcagct 280 |||||||||||||||||||| Sbjct: 397 ttgatgaagtttctgcagct 378
>emb|AL805917.3| Human DNA sequence from clone DAQB-10J12 on chromosome 6 Contains the TIGD1L gene for tigger transposable element derived 1-like, the 5' end of the C6orf214 gene for chromosome 6 open reading frame 214, the 5' end of the DDR1 gene for discoidin domain receptor family, member 1, and 1 CpG island, complete sequence Length = 65373 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 22037 tgttcttgataatgaactga 22018
>emb|AL662797.7| Human DNA sequence from clone XXbac-252P9 on chromosome 6 contains the 3' end of a putative novel transcript, the NRM gene for nurim (nuclear envelope membrane protein), a ribosomal protein L7 (RPL7) pseudogene, the gene for KIAA0170 protein, the TUBB gene for tubulin, beta polypeptide, the FLOT1 gene for flotillin 1, the IER3 gene for immediate early response 3, a putative novel transcript and five CpG islands, complete sequence Length = 171627 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 164878 tgttcttgataatgaactga 164859
>emb|AL662848.6| Human DNA sequence from clone XXbac-111D4 on chromosome 6 contains a ribosomal protein L7 (RPL7) pseudogene, the gene for KIAA0170 protein, the TUBB gene for tubulin, beta polypeptide, the FLOT1 gene for flotillin 1, the IER3 gene for immediate early response 3 , two putative novel transcripts and three CpG islands, complete sequence Length = 185617 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 149973 tgttcttgataatgaactga 149954
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 atgccgccgccttcatcgat 202 |||||||||||||||||||| Sbjct: 751815 atgccgccgccttcatcgat 751796
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 ccgccttcatcgatggcgcgtcgc 212 ||||||||||| |||||||||||| Sbjct: 1759053 ccgccttcatccatggcgcgtcgc 1759030
>emb|BX323006.12| Zebrafish DNA sequence from clone CH211-145H19 in linkage group 15, complete sequence Length = 161776 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ttctgcagctgtttctgtct 290 |||||||||||||||||||| Sbjct: 129193 ttctgcagctgtttctgtct 129212
>emb|CR388215.10| Human DNA sequence from clone DADB-91G1 on chromosome 6, complete sequence Length = 112744 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 99088 tgttcttgataatgaactga 99069
>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 Length = 1841713 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 tggcaacctggttggagggt 598 |||||||||||||||||||| Sbjct: 529182 tggcaacctggttggagggt 529163
>gb|AC091928.3| Homo sapiens chromosome 5 clone RP11-292F10, complete sequence Length = 200923 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 529 ttcagatgaatcttctggatcagg 552 ||||||||||||||||| |||||| Sbjct: 45425 ttcagatgaatcttctgaatcagg 45448
>emb|BX927194.9| Human DNA sequence from clone DAMA-342O2 on chromosome 6, complete sequence Length = 110208 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 15652 tgttcttgataatgaactga 15633
>gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, complete sequence Length = 181541 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 tgatgctggtagtgtttaca 458 |||||||||||||||||||| Sbjct: 116441 tgatgctggtagtgtttaca 116422
>emb|AL111267.1|CNS0196Z Botrytis cinerea strain T4 cDNA library Length = 780 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ttgatgaagtttctgcagct 280 |||||||||||||||||||| Sbjct: 261 ttgatgaagtttctgcagct 280
>gb|AC009102.10| Homo sapiens chromosome 16 clone RP11-441F2, complete sequence Length = 183394 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 tgatgctggtagtgtttaca 458 |||||||||||||||||||| Sbjct: 85557 tgatgctggtagtgtttaca 85576
>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete sequence Length = 250515 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tatctgatgctggtagtgtt 454 |||||||||||||||||||| Sbjct: 139940 tatctgatgctggtagtgtt 139959
>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region Length = 2229817 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 1100372 tgttcttgataatgaactga 1100391
>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region Length = 1750601 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 674493 tgttcttgataatgaactga 674512
>dbj|AB164631.1| Streptomyces griseus AdBS2 gene cluster (orf6-AdBS2, orf5-AdBS2, orf1-AdBS2, orf2-AdBS2, orf3-AdBS2, orf4-AdBS2), complete and partial cds Length = 6620 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 538 atcttctggatcaggtgttc 557 |||||||||||||||||||| Sbjct: 3431 atcttctggatcaggtgttc 3412
>emb|BX088547.12| Zebrafish DNA sequence from clone DKEY-238O14, complete sequence Length = 256446 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ttctgcagctgtttctgtct 290 |||||||||||||||||||| Sbjct: 249740 ttctgcagctgtttctgtct 249721
>gb|AC006167.1|AC006167 Homo sapiens clone UWGC:y67c092 from 6p21, complete sequence Length = 42883 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 35104 tgttcttgataatgaactga 35123
>dbj|AB023050.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region, clone:832F2, complete sequence Length = 112018 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tgttcttgataatgaactga 572 |||||||||||||||||||| Sbjct: 75402 tgttcttgataatgaactga 75421 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,157,800 Number of Sequences: 3902068 Number of extensions: 5157800 Number of successful extensions: 103949 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103713 Number of HSP's gapped (non-prelim): 232 length of query: 600 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 577 effective length of database: 17,143,297,704 effective search space: 9891682775208 effective search space used: 9891682775208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)