ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467471.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.8
2gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 1.8
3gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 1.8
4emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete ch... 40 1.8
5emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 40 1.8
6emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 40 1.8
7emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 40 1.8
8emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 1.8
9gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 1.8
10gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 1.8
11gb|AC151718.5| Mus musculus BAC clone RP23-142J2 from chromosome... 40 1.8
12gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 1.8
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
14dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
15gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 1.8
16ref|NM_185019.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
17ref|XM_467433.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
18ref|XM_464648.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
19ref|XM_465884.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.2
20gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 7.2
21gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV... 38 7.2
22gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 7.2
23gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.2
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.2
25gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 38 7.2
26emb|AL157381.8| Human DNA sequence from clone RP11-383M2 on chro... 38 7.2
27emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 7.2
28gb|AF074878.2| Burkholderia pseudomallei putative type III secre... 38 7.2
29tpg|BK005057.1| TPA: TPA_inf: Oryza sativa (indica cultivar-grou... 38 7.2
30gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genom... 38 7.2
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
32dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 7.2
36dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 38 7.2
37gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 38 7.2
38dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
39dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 7.2
41dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
42dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
43dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
44dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
45dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
46dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
47dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.2
48dbj|AK107963.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.2
49dbj|AB002234.1| Comamonas acidovorans gene for subunit B protein... 38 7.2 
>ref|XM_467471.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 621

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 cgccgccggcgccggagcgc 145
           ||||||||||||||||||||
Sbjct: 68  cgccgccggcgccggagcgc 87
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     cacctcgcgcgccatgtcga 44
              ||||||||||||||||||||
Sbjct: 705311 cacctcgcgcgccatgtcga 705292



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 121    cacgacgccgccggcgccg 139
              |||||||||||||||||||
Sbjct: 582476 cacgacgccgccggcgccg 582458
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 26      acctcgcgcgccatgtcgat 45
               ||||||||||||||||||||
Sbjct: 1583235 acctcgcgcgccatgtcgat 1583216
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>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12
          Length = 333800

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   gccgccggcgccggagcgcg 146
             ||||||||||||||||||||
Sbjct: 73231 gccgccggcgccggagcgcg 73250
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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    aacacctcgcgcgccatgtc 42
             ||||||||||||||||||||
Sbjct: 35674 aacacctcgcgcgccatgtc 35693
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     aacacctcgcgcgccatgtc 42
              ||||||||||||||||||||
Sbjct: 199649 aacacctcgcgcgccatgtc 199630
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>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     aacacctcgcgcgccatgtc 42
              ||||||||||||||||||||
Sbjct: 225383 aacacctcgcgcgccatgtc 225364
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 25      cacctcgcgcgccatgtcga 44
               ||||||||||||||||||||
Sbjct: 2025642 cacctcgcgcgccatgtcga 2025623



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 121     cacgacgccgccggcgccg 139
               |||||||||||||||||||
Sbjct: 1902246 cacgacgccgccggcgccg 1902228
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    acgacgccgccggcgccgga 141
              ||||||||||||||||||||
Sbjct: 719051 acgacgccgccggcgccgga 719032
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     cgccgccggcgccggagcgc 145
               ||||||||||||||||||||
Sbjct: 4090443 cgccgccggcgccggagcgc 4090462



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 23      aacacctcgcgcgccatgtc 42
               ||||||||||||||||||||
Sbjct: 3214102 aacacctcgcgcgccatgtc 3214121
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>gb|AC151718.5| Mus musculus BAC clone RP23-142J2 from chromosome 7, complete sequence
          Length = 213292

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     acatagccagcaggctgcat 94
              ||||||||||||||||||||
Sbjct: 151882 acatagccagcaggctgcat 151901
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     cacctcgcgcgccatgtcga 44
              ||||||||||||||||||||
Sbjct: 777485 cacctcgcgcgccatgtcga 777504
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 126      cgccgccggcgccggagcgc 145
                ||||||||||||||||||||
Sbjct: 29727538 cgccgccggcgccggagcgc 29727519



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 122      acgacgccgccggcgccgg 140
                |||||||||||||||||||
Sbjct: 29487021 acgacgccgccggcgccgg 29487003



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 113      ggcgactacacgacgccgccggcgccg 139
                |||||| |||||||||||||| |||||
Sbjct: 18098233 ggcgacaacacgacgccgccgccgccg 18098207



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 122     acgacgccgccggcgccgg 140
               |||||||||||||||||||
Sbjct: 6485229 acgacgccgccggcgccgg 6485211
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   cgccgccggcgccggagcgc 145
             ||||||||||||||||||||
Sbjct: 96517 cgccgccggcgccggagcgc 96498
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      cacctcgcgcgccatgtcga 44
               ||||||||||||||||||||
Sbjct: 1037126 cacctcgcgcgccatgtcga 1037145
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>ref|NM_185019.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 125 acgccgccggcgccggagc 143
           |||||||||||||||||||
Sbjct: 359 acgccgccggcgccggagc 341
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>ref|XM_467433.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 745

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 122 acgacgccgccggcgccgg 140
           |||||||||||||||||||
Sbjct: 116 acgacgccgccggcgccgg 98
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>ref|XM_464648.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3483

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 122 acgacgccgccggcgccgg 140
           |||||||||||||||||||
Sbjct: 85  acgacgccgccggcgccgg 67
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>ref|XM_465884.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 522

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 113 ggcgactacacgacgccgccggcgccg 139
           |||||| |||||||||||||| |||||
Sbjct: 191 ggcgacaacacgacgccgccgccgccg 165
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 121    cacgacgccgccggcgccg 139
              |||||||||||||||||||
Sbjct: 849557 cacgacgccgccggcgccg 849539
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>gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV.1 (SLV.1), SLV.1B
             (SLV.1B), SLV.2 (SLV.2), SLV.3 (SLV.3), SLV.4 (SLV.4),
             SLV.5 (SLV.5), SLV.6 (SLV.6), SLV.7, SLV.8, SLV.9 (SLV.9),
             SLV.10 (SLV.10), SLV.11 (SLV.11), SLV.12 (SLV.12), SLV.13
             (SLV.13), SLV.14 (SLV.14), SLV.15 (SLV.15), SLV.16
             (SLV.16), SLV.17 (SLV.17), SLV.18 (SLV.18), RegA (regA),
             TraSLVA (traSLVA), SLV.21 (SLV.21), ParSLV (parSLV),
             SLV.23 (SLV.23), SLV.24 (SLV.24), TpgSLV (tpgSLV), SLV.26
             (SLV.26), SLV.27 (SLV.27), TraSLVB (traSLVB), SLV.29
             (SLV.29), SLV.30 (SLV.30), TraSLR, SLV.32 (SLV.32), SLV.33
             (SLV.33), SLV.34 (SLV.34), SLV.35 (SLV.35), SLV.36
             (SLV.36), and SLV.37 (SLV.37) genes, complete cds
          Length = 41987

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 124   gacgccgccggcgccggag 142
             |||||||||||||||||||
Sbjct: 26017 gacgccgccggcgccggag 25999
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 121     cacgacgccgccggcgccg 139
               |||||||||||||||||||
Sbjct: 1866001 cacgacgccgccggcgccg 1865983
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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0018K15, complete sequence
          Length = 168519

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 125   acgccgccggcgccggagc 143
             |||||||||||||||||||
Sbjct: 92505 acgccgccggcgccggagc 92487
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 125      acgccgccggcgccggagc 143
                |||||||||||||||||||
Sbjct: 32238293 acgccgccggcgccggagc 32238311
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 128     ccgccggcgccggagcgcg 146
               |||||||||||||||||||
Sbjct: 2447705 ccgccggcgccggagcgcg 2447723
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>emb|AL157381.8| Human DNA sequence from clone RP11-383M2 on chromosome Xq21.1-21.32
             Contains GSSs, complete sequence
          Length = 23600

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    ttggagacatagccagcag 87
             |||||||||||||||||||
Sbjct: 15771 ttggagacatagccagcag 15753
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 121     cacgacgccgccggcgccg 139
               |||||||||||||||||||
Sbjct: 2498922 cacgacgccgccggcgccg 2498940
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>gb|AF074878.2| Burkholderia pseudomallei putative type III secretion
            system-associated gene cluster, complete sequence
          Length = 29814

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 121  cacgacgccgccggcgccg 139
            |||||||||||||||||||
Sbjct: 7909 cacgacgccgccggcgccg 7891
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>tpg|BK005057.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 54 (WRKY54) gene, complete cds
          Length = 1106

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 125 acgccgccggcgccggagc 143
           |||||||||||||||||||
Sbjct: 951 acgccgccggcgccggagc 969
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>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete
             sequence
          Length = 129778

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   acgccgccggcgccggagc 143
             |||||||||||||||||||
Sbjct: 89967 acgccgccggcgccggagc 89985
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 126     cgccgccggcgccggagcgcgtc 148
               |||||||| ||||||||||||||
Sbjct: 8627483 cgccgccgccgccggagcgcgtc 8627461
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 122      acgacgccgccggcgccgg 140
                |||||||||||||||||||
Sbjct: 27090290 acgacgccgccggcgccgg 27090272



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 122     acgacgccgccggcgccgg 140
               |||||||||||||||||||
Sbjct: 5580843 acgacgccgccggcgccgg 5580825



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 120     acacgacgccgccggcgccggag 142
               ||||||||| |||||||||||||
Sbjct: 5002046 acacgacgcagccggcgccggag 5002068
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 125      acgccgccggcgccggagc 143
                |||||||||||||||||||
Sbjct: 23406969 acgccgccggcgccggagc 23406951
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 125      acgccgccggcgccggagc 143
                |||||||||||||||||||
Sbjct: 32328805 acgccgccggcgccggagc 32328823
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 24      acacctcgcgcgccatgtc 42
               |||||||||||||||||||
Sbjct: 7635396 acacctcgcgcgccatgtc 7635378
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>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     acctcgcgcgccatgtcga 44
              |||||||||||||||||||
Sbjct: 345799 acctcgcgcgccatgtcga 345817
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 33      gcgccatgtcgatcctccc 51
               |||||||||||||||||||
Sbjct: 1139011 gcgccatgtcgatcctccc 1138993
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   acgacgccgccggcgccgg 140
             |||||||||||||||||||
Sbjct: 82051 acgacgccgccggcgccgg 82033
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1311_H06
          Length = 139868

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    acgacgccgccggcgccgg 140
              |||||||||||||||||||
Sbjct: 137893 acgacgccgccggcgccgg 137875
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 123     cgacgccgccggcgccgga 141
               |||||||||||||||||||
Sbjct: 9071402 cgacgccgccggcgccgga 9071420



 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 122     acgacgccgccggcgccgg 140
               |||||||||||||||||||
Sbjct: 8475811 acgacgccgccggcgccgg 8475793
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>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0473H04
          Length = 155204

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   acgacgccgccggcgccgg 140
             |||||||||||||||||||
Sbjct: 59100 acgacgccgccggcgccgg 59082
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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 120   acacgacgccgccggcgccggag 142
             ||||||||| |||||||||||||
Sbjct: 44160 acacgacgcagccggcgccggag 44182
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>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    acgacgccgccggcgccgg 140
              |||||||||||||||||||
Sbjct: 127751 acgacgccgccggcgccgg 127733
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 126    cgccgccggcgccggagcgcgtc 148
              |||||||| ||||||||||||||
Sbjct: 139394 cgccgccgccgccggagcgcgtc 139372
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>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1006_D05
          Length = 128178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 122    acgacgccgccggcgccgg 140
              |||||||||||||||||||
Sbjct: 127222 acgacgccgccggcgccgg 127204
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>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1307A11
          Length = 131538

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 122   acgacgccgccggcgccgg 140
             |||||||||||||||||||
Sbjct: 45842 acgacgccgccggcgccgg 45824
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>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0047E05
          Length = 184323

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 113   ggcgactacacgacgccgccggcgccg 139
             |||||| |||||||||||||| |||||
Sbjct: 21634 ggcgacaacacgacgccgccgccgccg 21608
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>dbj|AK107963.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C11, full
           insert sequence
          Length = 743

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 122 acgacgccgccggcgccgg 140
           |||||||||||||||||||
Sbjct: 116 acgacgccgccggcgccgg 98
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>dbj|AB002234.1| Comamonas acidovorans gene for subunit B protein of DNA gyrase,
           partial cds
          Length = 991

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 124 gacgccgccggcgccggag 142
           |||||||||||||||||||
Sbjct: 399 gacgccgccggcgccggag 381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 924,420
Number of Sequences: 3902068
Number of extensions: 924420
Number of successful extensions: 79402
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76537
Number of HSP's gapped (non-prelim): 2865
length of query: 150
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 129
effective length of database: 17,151,101,840
effective search space: 2212492137360
effective search space used: 2212492137360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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