ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart18f03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 143 bits (72), Expect = 7e-31 Identities = 200/242 (82%), Gaps = 3/242 (1%) Strand = Plus / Minus Query: 309 gtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactac 368 ||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| Sbjct: 20389542 gtgcggtgcggccggcgccacggggtccgcgtccgcgcgcgcagcggcgggcacgactac 20389483 Query: 369 gagggcctctcctacgcctccgtccacctccacaacgagcccttcgcggtgctggacctc 428 ||||||||||||||| |||| || ||| || ||||| ||||||||||| |||||| Sbjct: 20389482 gagggcctctcctacctctccctcgaccgcc---gcgagcggttcgcggtgctcgacctc 20389426 Query: 429 gccgctctccgggcgatccacgtcgacccggcgcgtgctgaggcgtgggccgagtccggg 488 ||||| ||||| | ||| ||| ||| | | || || |||||||||| || ||| || Sbjct: 20389425 gccgcgctccgcgacgtccgcgtggacgccgatcgcgccgaggcgtgggtcgggtcgggc 20389366 Query: 489 gccaccgtcggcgagctctactacgccgtgggcgccgccagccgctcgctcgggttcccg 548 ||||| ||||||||||||||||||| ||||||||||| |||||| | |||| ||||||| Sbjct: 20389365 gccacgctcggcgagctctactacgcggtgggcgccgcgagccgcactctcgcgttcccg 20389306 Query: 549 gc 550 || Sbjct: 20389305 gc 20389304 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 314 ctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 20421550 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 20421491 Query: 374 cctctc 379 |||||| Sbjct: 20421490 cctctc 20421485 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||| ||||||||||||||||| || ||| |||| ||||||||| Sbjct: 20461874 cacgtccaggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagc 20461815 Query: 354 ggcggccacgactacgagggcctctc 379 ||||| |||||||||||||||||||| Sbjct: 20461814 ggcgggcacgactacgagggcctctc 20461789 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || |||||| |||||||||||| ||||||||||| |||| | |||| Sbjct: 20486348 cccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgcatccgca 20486289 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 20486288 gcggcgggcacgactacgagggcctctc 20486261 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 314 ctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 |||||||||||| || | ||||||||||| | |||||||||||| |||||||||||||| Sbjct: 20465994 ctgcggccgccggcatcgtgtccgcgtccgcgcgcgcagcggcgggcacgactacgaggg 20465935 Query: 374 cctctc 379 ||||| Sbjct: 20465934 gctctc 20465929 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||| |||||||||| | | || || ||| |||| | ||||||| Sbjct: 20438060 cacgtccaggccgccgtgctctgcggccgcgccgagggggtgcgcctccgcgcgcgcagc 20438001 Query: 354 ggcggccacgactacgagggcctctc 379 ||||| |||||||||||||||||||| Sbjct: 20438000 ggcgggcacgactacgagggcctctc 20437975 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||||||||||| | |||| |||||| |||||| |||||| Sbjct: 20404822 cacgtccaggccgccgtgcgctgcggcgtcggccatggcgtctccgtccgctcccgcagc 20404763 Query: 354 ggcggccacgactacgagggcctctcctac 383 ||||| || |||||||||||||| |||||| Sbjct: 20404762 ggcgggcatgactacgagggcctgtcctac 20404733
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 143 bits (72), Expect = 7e-31 Identities = 200/242 (82%), Gaps = 3/242 (1%) Strand = Plus / Minus Query: 309 gtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactac 368 ||||| |||||||| |||||||| ||||||||||| | |||||||||||| ||||||||| Sbjct: 112937 gtgcggtgcggccggcgccacggggtccgcgtccgcgcgcgcagcggcgggcacgactac 112878 Query: 369 gagggcctctcctacgcctccgtccacctccacaacgagcccttcgcggtgctggacctc 428 ||||||||||||||| |||| || ||| || ||||| ||||||||||| |||||| Sbjct: 112877 gagggcctctcctacctctccctcgaccgcc---gcgagcggttcgcggtgctcgacctc 112821 Query: 429 gccgctctccgggcgatccacgtcgacccggcgcgtgctgaggcgtgggccgagtccggg 488 ||||| ||||| | ||| ||| ||| | | || || |||||||||| || ||| || Sbjct: 112820 gccgcgctccgcgacgtccgcgtggacgccgatcgcgccgaggcgtgggtcgggtcgggc 112761 Query: 489 gccaccgtcggcgagctctactacgccgtgggcgccgccagccgctcgctcgggttcccg 548 ||||| ||||||||||||||||||| ||||||||||| |||||| | |||| ||||||| Sbjct: 112760 gccacgctcggcgagctctactacgcggtgggcgccgcgagccgcactctcgcgttcccg 112701 Query: 549 gc 550 || Sbjct: 112700 gc 112699 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Minus Query: 314 ctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 144945 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 144886 Query: 374 cctctc 379 |||||| Sbjct: 144885 cctctc 144880 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||||||||||| | |||| |||||| |||||| |||||| Sbjct: 128217 cacgtccaggccgccgtgcgctgcggcgtcggccatggcgtctccgtccgctcccgcagc 128158 Query: 354 ggcggccacgactacgagggcctctcctac 383 ||||| || |||||||||||||| |||||| Sbjct: 128157 ggcgggcatgactacgagggcctgtcctac 128128
>dbj|AK072611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133A01, full insert sequence Length = 2030 Score = 99.6 bits (50), Expect = 1e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 314 ctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 316 ctgcggccgccgccacaacgtccgcatccgcgtgcgcagcggcggccacgactacgaggg 375 Query: 374 cctctc 379 |||||| Sbjct: 376 cctctc 381
>emb|AJ512488.2|PPR512488 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele B1 Length = 1580 Score = 97.6 bits (49), Expect = 4e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||| Sbjct: 235 tgcggccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgagggc 294 Query: 375 ctctc 379 ||||| Sbjct: 295 ctctc 299 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 410 tcggcgagctctactacgcc 429
>gb|DQ251188.1| Phleum pratense major pollen allergen Phl p 4 precursor, mRNA, complete cds Length = 1741 Score = 97.6 bits (49), Expect = 4e-17 Identities = 61/65 (93%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||| Sbjct: 321 tgcggccgccgccacagcgtccgcatccgcgtgcgcagcggcgggcacgactacgagggc 380 Query: 375 ctctc 379 ||||| Sbjct: 381 ctctc 385 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 496 tcggcgagctctactacgcc 515
>emb|AJ862834.1| Hordeum vulgare partial horv4 gene for pollen allergen Hor v 4 Length = 1608 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 274 tgcggccgccggcacggcgtccgcctccgcgtgcggagcggcggccacgactacgagggc 333 Query: 375 ct 376 || Sbjct: 334 ct 335 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 449 tcggcgagctctactacgcc 468
>emb|AJ862833.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele B Length = 1603 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 271 tgcggccgccggcacggcgtccgcctccgcgtgcggagcggcggccacgactacgagggc 330 Query: 375 ct 376 || Sbjct: 331 ct 332 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 446 tcggcgagctctactacgcc 465
>emb|AJ862831.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele B Length = 1644 Score = 91.7 bits (46), Expect = 2e-15 Identities = 58/62 (93%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 280 tgcggccgccggcacggcgtccgcatccgcgtgcggagcggcggccacgactacgagggc 339 Query: 375 ct 376 || Sbjct: 340 ct 341 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 455 tcggcgagctctactacgcc 474
>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0659D09 Length = 168253 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||| ||||||||||||||||| || ||| |||| ||||||||| Sbjct: 34169 cacgtccaggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagc 34110 Query: 354 ggcggccacgactacgagggcctctc 379 ||||| |||||||||||||||||||| Sbjct: 34109 ggcgggcacgactacgagggcctctc 34084 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || |||||| |||||||||||| ||||||||||| |||| | |||| Sbjct: 58643 cccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgcatccgca 58584 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 58583 gcggcgggcacgactacgagggcctctc 58556 Score = 67.9 bits (34), Expect = 3e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 314 ctgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 |||||||||||| || | ||||||||||| | |||||||||||| |||||||||||||| Sbjct: 38289 ctgcggccgccggcatcgtgtccgcgtccgcgcgcgcagcggcgggcacgactacgaggg 38230 Query: 374 cctctc 379 ||||| Sbjct: 38229 gctctc 38224 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||| |||||||||| | | || || ||| |||| | ||||||| Sbjct: 10355 cacgtccaggccgccgtgctctgcggccgcgccgagggggtgcgcctccgcgcgcgcagc 10296 Query: 354 ggcggccacgactacgagggcctctc 379 ||||| |||||||||||||||||||| Sbjct: 10295 ggcgggcacgactacgagggcctctc 10270
>dbj|AK073505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046H14, full insert sequence Length = 1813 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||| ||||||||||||||||| || ||| |||| ||||||||| Sbjct: 313 cacgtccaggccgccgtgctgtgcggccgccgccacggggtgcgcctccgcgtgcgcagc 372 Query: 354 ggcggccacgactacgagggcctctc 379 ||||| |||||||||||||||||||| Sbjct: 373 ggcgggcacgactacgagggcctctc 398
>emb|AJ512487.2|PPR512487 Phleum pratense partial phlp4 gene for pollen allergen Phl p 4, allele A1 Length = 1567 Score = 89.7 bits (45), Expect = 9e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| ||||| |||||| |||| |||||||||||||| ||||||||||||||| Sbjct: 235 tgcggccgccggcacggtgtccgcatccgcgtgcgcagcggcgggcacgactacgagggc 294 Query: 375 ctctc 379 ||||| Sbjct: 295 ctctc 299 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 410 tcggcgagctctactacgcc 429
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || ||||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 74475 cccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcgtgcgca 74416 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 74415 gcggcgggcacgactacgagggcctctc 74388 Score = 40.1 bits (20), Expect = 7.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 470 ggcgtgggccgagtccggggccaccgtcggcgagctctactacgccgt 517 |||||||| || ||||| ||||| |||| ||||||||||||||||| Sbjct: 74303 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgt 74256
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || ||||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 17006868 cccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcgtgcgca 17006809 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 17006808 gcggcgggcacgactacgagggcctctc 17006781 Score = 40.1 bits (20), Expect = 7.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 470 ggcgtgggccgagtccggggccaccgtcggcgagctctactacgccgt 517 |||||||| || ||||| ||||| |||| ||||||||||||||||| Sbjct: 17006696 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgt 17006649
>dbj|AK109673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B05, full insert sequence Length = 1972 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || |||||| |||||||||||| ||||||||||| |||| | |||| Sbjct: 324 cccacgtccaggccgccgtgctctgcggccgccggaacggcgtccgcctccgcatccgca 383 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 384 gcggcgggcacgactacgagggcctctc 411
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 4e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||| ||| || ||||||| ||||||| ||| |||||||||| |||| ||||||| Sbjct: 17101520 cccacgtccaggccgccgtgcggtgcggccaccggagcggcgtccgcctccgcgtgcgca 17101461 Query: 352 gcggcggccacgactacgagggcctctc 379 ||||||| |||||||||||||||||||| Sbjct: 17101460 gcggcgggcacgactacgagggcctctc 17101433 Score = 40.1 bits (20), Expect = 7.9 Identities = 41/48 (85%) Strand = Plus / Minus Query: 470 ggcgtgggccgagtccggggccaccgtcggcgagctctactacgccgt 517 |||||||| || ||||| ||||| |||| ||||||||||||||||| Sbjct: 17101348 ggcgtgggtggactccggcgccacgctcggggagctctactacgccgt 17101301
>emb|AJ862830.1| Secale cereale partial secc4 gene for pollen allergen Sec c 4, allele A Length = 1603 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| |||||| ||||| |||| ||||| |||||||||||||||||||||||| Sbjct: 274 tgcggccgccggcacggcatccgcctccgcgtgcggagcggcggccacgactacgagggc 333 Query: 375 ct 376 || Sbjct: 334 ct 335
>emb|AJ862835.1| Lolium perenne partial lolp4 gene for pollen allergen Lol p 4 Length = 1272 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||||||||| ||| ||||||| |||| || ||||||||||| ||||||||||||||| Sbjct: 11 tgcggccgccgttacgacgtccgcatccgcgtacgcagcggcgggcacgactacgagggc 70 Query: 375 ctctc 379 ||||| Sbjct: 71 ctctc 75 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 186 tcggcgagctctactacgcc 205
>emb|AJ862832.1| Triticum aestivum partial tria4 gene for pollen allergen Tri a 4, allele A Length = 1603 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgagggc 374 ||||| ||||| ||| |||||||| |||| || || |||||||||||||||||||||||| Sbjct: 271 tgcggacgccggcacagcgtccgcctccgcgtccggagcggcggccacgactacgagggc 330 Query: 375 ct 376 || Sbjct: 331 ct 332 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcggcgagctctactacgcc 515 |||||||||||||||||||| Sbjct: 446 tcggcgagctctactacgcc 465
>gb|BT009387.1| Triticum aestivum clone wlm96.pk035.d7:fis, full insert mRNA sequence Length = 1805 Score = 65.9 bits (33), Expect = 1e-07 Identities = 72/85 (84%) Strand = Plus / Plus Query: 292 cccacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgca 351 ||||||||||| || |||||| ||||||||||| ||| | ||| |||| ||||||| Sbjct: 287 cccacgtgcaggccgccgtgctgtgcggccgccggagcgggctgcgcatccgcgtgcgca 346 Query: 352 gcggcggccacgactacgagggcct 376 ||||||| ||||||||||||||||| Sbjct: 347 gcggcgggcacgactacgagggcct 371
>gb|AY451241.1| Cynodon dactylon FAD-linked oxidoreductase BG60 mRNA, complete cds Length = 1569 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 315 tgcggccgccgccacggcgtccgcgtccgtgtgcgcagcggcggccacgactacgaggg 373 ||||||||||| |||||| | ||| |||| |||||||| ||||| |||||||||||||| Sbjct: 292 tgcggccgccggcacggcatgcgcatccgcgtgcgcagtggcgggcacgactacgaggg 350
>ref|NM_192799.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3201 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 2464 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 2423
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0008E07, complete sequence Length = 146679 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 106104 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 106145
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 12338626 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 12338667
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 7689747 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 7689788
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 24483699 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 24483740 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 347 gcgcagcggcggccacgactacgagggcctctc 379 |||||||||||| ||| |||||||||||||||| Sbjct: 10209761 gcgcagcggcgggcacaactacgagggcctctc 10209729
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 64083 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 64124
>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_A12 Length = 149089 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 338 cgtccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||||| | |||||||||||| |||||||||||||||||||| Sbjct: 26012 cgtccgcgcgcgcagcggcgggcacgactacgagggcctctc 26053
>dbj|AK105176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H12, full insert sequence Length = 1757 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 294 cacgtgcagaccaccgtgcgctgcggccgccgccacggcgtccgcgtccgtgtgcgcagc 353 ||||| ||| || |||||||||||||| | |||| |||||| |||||| |||||| Sbjct: 314 cacgtccaggccgccgtgcgctgcggcgtcggccatggcgtctccgtccgctcccgcagc 373 Query: 354 ggcggccacgactacgagggcctctcctac 383 ||||| || |||||||||||||| |||||| Sbjct: 374 ggcgggcatgactacgagggcctgtcctac 403
>ref|XM_462837.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 975 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 347 gcgcagcggcggccacgactacgagggcctctc 379 |||||||||||| ||| |||||||||||||||| Sbjct: 681 gcgcagcggcgggcacaactacgagggcctctc 713
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 347 gcgcagcggcggccacgactacgagggcctctc 379 |||||||||||| ||| |||||||||||||||| Sbjct: 75075 gcgcagcggcgggcacaactacgagggcctctc 75043
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 347 gcgcagcggcggccacgactacgagggcctctc 379 |||||||||||| ||| |||||||||||||||| Sbjct: 134360 gcgcagcggcgggcacaactacgagggcctctc 134328
>ref|XM_473184.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 774 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 542 cggcgtccgcgtccgtgtgcgc 563
>gb|AY323484.1| Oryza sativa (japonica cultivar-group) myb-related protein (LTR1) mRNA, complete cds Length = 1207 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 630 cggcgtccgcgtccgtgtgcgc 651
>emb|Y11414.1|OSMYB1202 O.sativa mRNA for myb factor, 1202 bp Length = 1202 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 620 cggcgtccgcgtccgtgtgcgc 641
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 caacgagcccttcgcggtgctg 422 |||||||||||||||||||||| Sbjct: 62652 caacgagcccttcgcggtgctg 62673
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 caacgagcccttcgcggtgctg 422 |||||||||||||||||||||| Sbjct: 15456 caacgagcccttcgcggtgctg 15477
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 caacgagcccttcgcggtgctg 422 |||||||||||||||||||||| Sbjct: 132657 caacgagcccttcgcggtgctg 132678
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 34450 cggcgtccgcgtccgtgtgcgc 34429
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 25817040 cggcgtccgcgtccgtgtgcgc 25817019
>dbj|AK111798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H16, full insert sequence Length = 1836 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 cggcgtccgcgtccgtgtgcgc 350 |||||||||||||||||||||| Sbjct: 1272 cggcgtccgcgtccgtgtgcgc 1293
>ref|NM_129034.2| Arabidopsis thaliana electron carrier AT2G34810 mRNA, complete cds Length = 1807 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 agcggcggccacgactacgagggcctctcctac 383 ||||| |||||||||||||| ||| |||||||| Sbjct: 373 agcggaggccacgactacgaaggcttctcctac 405
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 gatcatcgcggccgccgagcacgcc 293 |||||||||||||| |||||||||| Sbjct: 49818 gatcatcgcggccgacgagcacgcc 49842
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 gatcatcgcggccgccgagcacgcc 293 |||||||||||||| |||||||||| Sbjct: 853663 gatcatcgcggccgacgagcacgcc 853687
>gb|BT008897.1| Arabidopsis thaliana At2g34810 mRNA, complete cds Length = 1623 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 agcggcggccacgactacgagggcctctcctac 383 ||||| |||||||||||||| ||| |||||||| Sbjct: 337 agcggaggccacgactacgaaggcttctcctac 369
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 gatcatcgcggccgccgagcacgcc 293 |||||||||||||| |||||||||| Sbjct: 696079 gatcatcgcggccgacgagcacgcc 696103
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 417 gtgctggacctcgccgctctccggg 441 ||||||||||||||||| ||||||| Sbjct: 40404 gtgctggacctcgccgccctccggg 40428
>gb|AY099836.1| Arabidopsis thaliana putative berberine bridge enzyme (At2g34810) mRNA, complete cds Length = 1807 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 agcggcggccacgactacgagggcctctcctac 383 ||||| |||||||||||||| ||| |||||||| Sbjct: 373 agcggaggccacgactacgaaggcttctcctac 405
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 agcggcggccacgactacgagggcctctcctac 383 ||||| |||||||||||||| ||| |||||||| Sbjct: 14305 agcggaggccacgactacgaaggcttctcctac 14337
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 265 tggggatcatcgcggccgccg 285 ||||||||||||||||||||| Sbjct: 2474617 tggggatcatcgcggccgccg 2474597
>emb|BX819885.1|CNS0A9ZP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS43ZC06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1790 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 351 agcggcggccacgactacgagggcctctcctac 383 ||||| |||||||||||||| ||| |||||||| Sbjct: 343 agcggaggccacgactacgaaggcttctcctac 375
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 ggccgccgccacggcgtccgcgtcc 342 |||||||||||||||||| |||||| Sbjct: 898479 ggccgccgccacggcgtcggcgtcc 898455
>ref|NM_100078.1| Arabidopsis thaliana ATSEC1A; electron carrier AT1G01980 (ATSEC1A) mRNA, complete cds Length = 1626 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 348 cgcagcggcggccacgactacgagggcctctcctac 383 |||||||||||||| |||||||| ||| | |||||| Sbjct: 325 cgcagcggcggccatgactacgacggcgtttcctac 360
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tgcgctgcggccgccgccacggcg 333 |||||||||||| ||||||||||| Sbjct: 1208740 tgcgctgcggcccccgccacggcg 1208717
>ref|XM_481787.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 340 tccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||| ||||||||||||| ||| ||||||||||||||| Sbjct: 302 tccgcgtgcgcagcggcgcgcacagctacgagggcctctc 341
>ref|NM_189046.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1674 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 474 gagctctactacgccgtggg 493
>ref|XM_507136.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.107 mRNA Length = 1694 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 475 gagctctactacgccgtggg 494
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 17473 gaccaccgtgcgctgcggcagccg 17496
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 catcgcggccgccgagcacg 291 |||||||||||||||||||| Sbjct: 681146 catcgcggccgccgagcacg 681165
>gb|AC167135.3| Mus musculus chromosome 1, clone RP24-335L18, complete sequence Length = 157775 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acaatgttacaccttgtcct 61 |||||||||||||||||||| Sbjct: 95910 acaatgttacaccttgtcct 95891
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence Length = 143392 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggccacgactacgagggcct 376 |||||||||||||||||||| Sbjct: 77566 ggccacgactacgagggcct 77585
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 21324562 gaccaccgtgcgctgcggcagccg 21324585
>gb|AC160101.7| Mus musculus chromosome 1, clone RP24-126E20, complete sequence Length = 159705 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acaatgttacaccttgtcct 61 |||||||||||||||||||| Sbjct: 56371 acaatgttacaccttgtcct 56390
>gb|AC125185.3| Mus musculus BAC clone RP23-301L11 from chromosome 19, complete sequence Length = 168526 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 gctgcggccgccgccacggc 332 |||||||||||||||||||| Sbjct: 165334 gctgcggccgccgccacggc 165353
>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence Length = 234158 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 ctcctgccccaccatgggca 573 |||||||||||||||||||| Sbjct: 10241 ctcctgccccaccatgggca 10260
>ref|NM_008023.1| Mus musculus forkhead box B2 (Foxb2), mRNA Length = 1515 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gctgcggccgccgccacggc 332 |||||||||||||||||||| Sbjct: 864 gctgcggccgccgccacggc 845
>gb|AF317286.1| Gallus gallus ephrin-A6 mRNA, partial cds Length = 981 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 gcggccgccgccacggcgtc 335 |||||||||||||||||||| Sbjct: 56 gcggccgccgccacggcgtc 75
>emb|X92591.1|MMFKH4 M.musculus mRNA for fkh-4 protein Length = 1515 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gctgcggccgccgccacggc 332 |||||||||||||||||||| Sbjct: 864 gctgcggccgccgccacggc 845
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 catcgcggccgccgagcacg 291 |||||||||||||||||||| Sbjct: 2000274 catcgcggccgccgagcacg 2000293
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 544 tcccggcgggctcctgccccaccatgggcatc 575 ||||||| ||||||||||||||| | |||||| Sbjct: 18569 tcccggccggctcctgccccaccgtcggcatc 18538
>gb|AC159821.2| Mus musculus BAC clone RP23-152A3 from chromosome 9, complete sequence Length = 221672 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 gctcctgccccaccatgggc 572 |||||||||||||||||||| Sbjct: 103724 gctcctgccccaccatgggc 103743
>emb|CR759734.3| Zebrafish DNA sequence from clone CH211-140L7 in linkage group 20, complete sequence Length = 185855 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ctaaccctctacatcctctc 79 |||||||||||||||||||| Sbjct: 143286 ctaaccctctacatcctctc 143305
>gb|AC112702.3| Homo sapiens chromosome 19 clone CTB-151G24, complete sequence Length = 45995 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 551 gggctcctgccccaccatgggcat 574 |||||| ||||||||||||||||| Sbjct: 31193 gggctcttgccccaccatgggcat 31170
>dbj|AK220962.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-55-G06 Length = 1812 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 348 cgcagcggcggccacgactacgagggcctctcctac 383 |||||||||||||| |||||||| ||| | |||||| Sbjct: 299 cgcagcggcggccatgactacgacggcgtttcctac 334
>gb|AC101790.5| Mus musculus chromosome 8, clone RP24-163M14, complete sequence Length = 202651 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 ctcctgccccaccatgggca 573 |||||||||||||||||||| Sbjct: 133063 ctcctgccccaccatgggca 133044
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 catcgcggccgccgagcacg 291 |||||||||||||||||||| Sbjct: 801391 catcgcggccgccgagcacg 801372
>gb|AF226616.1|AF226616 Branchiostoma floridae LIM-homeodomain transcription factor islet mRNA, complete cds Length = 2713 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 cgggctcctgccccaccatgggca 573 ||||||||||| |||||||||||| Sbjct: 949 cgggctcctgcgccaccatgggca 926
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 8608250 gaccaccgtgcgctgcggcagccg 8608273
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 340 tccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||| ||||||||||||| ||| ||||||||||||||| Sbjct: 15504532 tccgcgtgcgcagcggcgcgcacagctacgagggcctctc 15504493 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 3403151 gagctctactacgccgtggg 3403132
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 21317591 gaccaccgtgcgctgcggcagccg 21317614
>gb|AC020622.3|F22M8 Sequence of BAC F22M8 from Arabidopsis thaliana chromosome 1, complete sequence Length = 47295 Score = 40.1 bits (20), Expect = 7.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 348 cgcagcggcggccacgactacgagggcctctcctac 383 |||||||||||||| |||||||| ||| | |||||| Sbjct: 36876 cgcagcggcggccatgactacgacggcgtttcctac 36841
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gccacggcgtccgcgtccgt 344 |||||||||||||||||||| Sbjct: 2694922 gccacggcgtccgcgtccgt 2694903
>gb|AC142168.3| Mus musculus BAC clone RP24-80B23 from chromosome 9, complete sequence Length = 173152 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 gctcctgccccaccatgggc 572 |||||||||||||||||||| Sbjct: 20048 gctcctgccccaccatgggc 20067
>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079G12 Length = 139796 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 129460 gaccaccgtgcgctgcggcagccg 129483
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 ccgccctcctgctgtccaccgccc 225 |||| ||||||||||||||||||| Sbjct: 4505708 ccgcgctcctgctgtccaccgccc 4505731 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 cgggcgatccacgtcgacccggcg 461 ||||||||||||| |||||||||| Sbjct: 3174566 cgggcgatccacgacgacccggcg 3174589
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 gaccaccgtgcgctgcggccgccg 325 ||||||||||||||||||| |||| Sbjct: 38046 gaccaccgtgcgctgcggcagccg 38069
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 40.1 bits (20), Expect = 7.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 340 tccgtgtgcgcagcggcggccacgactacgagggcctctc 379 |||| ||||||||||||| ||| ||||||||||||||| Sbjct: 52290 tccgcgtgcgcagcggcgcgcacagctacgagggcctctc 52251
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 36570 gagctctactacgccgtggg 36551
>gb|AC004164.1|AC004164 Homo sapiens chromosome 19, cosmid R26450, complete sequence Length = 36798 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 551 gggctcctgccccaccatgggcat 574 |||||| ||||||||||||||||| Sbjct: 3762 gggctcttgccccaccatgggcat 3739
>dbj|AK104045.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F06, full insert sequence Length = 1674 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 474 gagctctactacgccgtggg 493
>dbj|AK069480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019G18, full insert sequence Length = 1694 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 gagctctactacgccgtggg 520 |||||||||||||||||||| Sbjct: 475 gagctctactacgccgtggg 494
>gb|AC128703.4| Mus musculus BAC clone RP23-356E22 from 19, complete sequence Length = 221568 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gctgcggccgccgccacggc 332 |||||||||||||||||||| Sbjct: 161147 gctgcggccgccgccacggc 161128
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gctgcggccgccgccacggc 332 |||||||||||||||||||| Sbjct: 443889 gctgcggccgccgccacggc 443870
>gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, complete sequence Length = 250160 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acaatgttacaccttgtcct 61 |||||||||||||||||||| Sbjct: 21484 acaatgttacaccttgtcct 21465 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,204,866 Number of Sequences: 3902068 Number of extensions: 3204866 Number of successful extensions: 70831 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68237 Number of HSP's gapped (non-prelim): 2590 length of query: 579 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 556 effective length of database: 17,143,297,704 effective search space: 9531673523424 effective search space used: 9531673523424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
