>ISPH_VIBVY (Q7MNM5) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 316

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +3

Query: 255 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 425
           R  TVFDA+  LV +V +    AS    EVVL+  AG P +     +  SL G  +LV  
Sbjct: 87  RALTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASLQGGMYLVEK 146

Query: 426 GEETRAPPLYAVKRTPQYMRGGGKST 503
            E+     L A+ + P  +    ++T
Sbjct: 147 PEDVLG--LKAIVKDPSNLHYVSQTT 170

>ISPH_VIBVU (Q8DET0) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 316

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +3

Query: 255 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 425
           R  TVFDA+  LV +V +    AS    EVVL+  AG P +     +  SL G  +LV  
Sbjct: 87  RALTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASLQGGMYLVEK 146

Query: 426 GEETRAPPLYAVKRTPQYMRGGGKST 503
            E+     L A+ + P  +    ++T
Sbjct: 147 PEDVLG--LKAIVKDPSNLHYVSQTT 170

>RNPH_SYMTH (Q67SL5) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 273

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = -2

Query: 425 GEDQPLVAHEADGLLAADGEHGPPRGVHEHHLGAGVGRVDVHAVHQVAAGVEHREPPAVE 246
           GE++P    E + LLA   E G  R V       G   V+V AV   A+G+ H+EP    
Sbjct: 204 GEERPFTRRELEELLAL-AESGVRRLVALQREQLGPLGVEVGAVVTEASGIGHQEPGEGA 262

Query: 245 EQRLAP 228
              LAP
Sbjct: 263 GVSLAP 268

>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
 Frame = +1

Query: 241 CSSTAGGSRCSTPAATWC--------TAWTSTRPTPAPRWCSWTPRGGPC 366
           C    G  R  TP++  C        T+W  T  T    WCS   R  PC
Sbjct: 634 CPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEPC 683

>PJA1_HUMAN (Q8NG27) Ubiquitin protein ligase Praja1 (EC 6.3.2.-) (RING finger|
           protein 70)
          Length = 643

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 378 RKKAISLMGDQWLVFPGEETRAPPLYAVKRTPQYMRGGGKS 500
           R++ +S  G+ W   PG+E R PP   V  +     G G S
Sbjct: 382 REQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGAS 422

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 235  SRCSSTAGGSRCSTPAATWCTAWTSTRPT 321
            S C ST   S  +TP++T  T W  T+PT
Sbjct: 1884 SHCPSTLATSSTATPSSTPGTTWILTKPT 1912

>GALE_YERPE (Q9F7D4) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)|
           (UDP-galactose 4-epimerase)
          Length = 338

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 395 ADGLLAADGE-HGPPRGVHEHHLGAGVGRVDVHAVHQVAA 279
           ADG +AA    HG P GVH  +LGAGVG    H+V QV A
Sbjct: 240 ADGHVAAMKTLHGKP-GVHIFNLGAGVG----HSVLQVVA 274

>ISPH_VIBCH (Q9KU44) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 316

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 255 RGFTVFDASGNLVYRVDIY---ASDSRAEVVLMDAAGRPVLTVRRKKAISLMGDQWLVFP 425
           R  TVFDA+  LV +V +    AS    EVVL+  AG P +     +  S  G  +LV  
Sbjct: 87  RSLTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASDTGGMYLVEK 146

Query: 426 GEE 434
            E+
Sbjct: 147 PED 149

>XERDL_THETN (Q8RAB1) Tyrosine recombinase xerD-like protein|
          Length = 290

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
 Frame = +3

Query: 168 PSLGMPAAAAVDEEPVTLTVWRKSLLFNCRGFTVFDASGNLVYRVDIYASDSRAEVVLMD 347
           PS G+ A     +EPVTLTV +  +L +      FD      +  D      +A + LM 
Sbjct: 94  PSYGINAPKVEKKEPVTLTVEQVDMLLS------FD------FGKDEKGLRDKALIELMY 141

Query: 348 AAGRPVLTVRRKKA--ISLMGDQWLVFPGEETRAP-PLYAVKRTPQYMRGGGK 497
           A+G  V  V   K   ++L     +V  G+E   P   YAV    +Y+  G K
Sbjct: 142 ASGLKVSEVISLKIEDVNLASGYIVVRSGKERVIPIGSYAVAALQEYIEKGRK 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,840,155
Number of Sequences: 219361
Number of extensions: 1132750
Number of successful extensions: 3499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3496
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)