Clone Name | bart18c06 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 463 gcgcacgccggcgtcgacccaa 484 |||||||||||||||||||||| Sbjct: 1320441 gcgcacgccggcgtcgacccaa 1320420
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22, complete sequence Length = 156725 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 catttcaccgaacaggttgtg 448 ||||||||||||||||||||| Sbjct: 108992 catttcaccgaacaggttgtg 109012
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 448 gtgcgccacaacgacgcgcacgccg 472 |||||||||||| |||||||||||| Sbjct: 126235 gtgcgccacaactacgcgcacgccg 126259
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 catttcaccgaacaggttgtg 448 ||||||||||||||||||||| Sbjct: 16793430 catttcaccgaacaggttgtg 16793450
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 catttcaccgaacaggttgtg 448 ||||||||||||||||||||| Sbjct: 16569503 catttcaccgaacaggttgtg 16569483
>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1123_B08 Length = 134028 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 428 catttcaccgaacaggttgtg 448 ||||||||||||||||||||| Sbjct: 101728 catttcaccgaacaggttgtg 101708
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 461 acgcgcacgccggcgtcgacc 481 ||||||||||||||||||||| Sbjct: 4268542 acgcgcacgccggcgtcgacc 4268522
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 428 catttcaccgaacaggttgtg 448 ||||||||||||||||||||| Sbjct: 16887200 catttcaccgaacaggttgtg 16887220
>gb|AC149530.2| Xenopus tropicalis clone ISB-301B24, complete sequence Length = 87416 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ttctgctggcttgtttgctc 259 |||||||||||||||||||| Sbjct: 83940 ttctgctggcttgtttgctc 83921
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 cgcacgccggcgtcgaccca 483 |||||||||||||||||||| Sbjct: 600017 cgcacgccggcgtcgaccca 600036
>gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence Length = 37100 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 ccatcctcatcgccgcagcc 121 |||||||||||||||||||| Sbjct: 22042 ccatcctcatcgccgcagcc 22023
>gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complete sequence Length = 210608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tcagcgcggctccgaagcag 538 |||||||||||||||||||| Sbjct: 98553 tcagcgcggctccgaagcag 98534
>ref|XM_750803.1| Aspergillus fumigatus Af293 mitochondrial DNA-directed RNA polymerase (Afu2g15610) partial mRNA Length = 4128 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 ccagcattccatcctcatcgccgc 117 |||||||| ||||||||||||||| Sbjct: 433 ccagcatttcatcctcatcgccgc 410
>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA0515), the RNU62 gene for U62 small nucleolar RNA, a novel gene identical to the RNU62 gene, the POMT1 gene for protein-O-mannosyltransferase 1, a novel gene, the gene for uridine-cytidine kinase 1 (UCK1) and three CpG islands, complete sequence Length = 147492 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cttttggctgcctcagctgc 200 |||||||||||||||||||| Sbjct: 130461 cttttggctgcctcagctgc 130442
>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence Length = 212426 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 attctgctggcttgtttgct 258 |||||||||||||||||||| Sbjct: 27479 attctgctggcttgtttgct 27498
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 484 aggcgatgccggcgtcgacc 503 |||||||||||||||||||| Sbjct: 3700322 aggcgatgccggcgtcgacc 3700303
>dbj|AK128701.1| Homo sapiens cDNA FLJ46868 fis, clone UTERU3012414, highly similar to Guanine nucleotide-binding protein, alpha-12 subunit Length = 3781 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tcagcgcggctccgaagcag 538 |||||||||||||||||||| Sbjct: 308 tcagcgcggctccgaagcag 289
>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence Length = 216143 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccgtgtaccgtgtgtggct 138 |||||||||||||||||||| Sbjct: 21838 gccgtgtaccgtgtgtggct 21819
>ref|NM_001015893.1| Xenopus tropicalis hypothetical protein LOC548647 (LOC548647), mRNA Length = 3990 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ttctgctggcttgtttgctc 259 |||||||||||||||||||| Sbjct: 1376 ttctgctggcttgtttgctc 1357
>gb|AC012351.3|AC012351 Homo sapiens BAC clone CTD-2312I3 from 7p22, complete sequence Length = 150983 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tcagcgcggctccgaagcag 538 |||||||||||||||||||| Sbjct: 32302 tcagcgcggctccgaagcag 32283
>gb|AC004933.1|AC004933 Homo sapiens PAC clone RP5-952L21 from 7p22-p2, complete sequence Length = 124675 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 tcagcgcggctccgaagcag 538 |||||||||||||||||||| Sbjct: 31242 tcagcgcggctccgaagcag 31261
>emb|CR761985.2| Xenopus tropicalis finished cDNA, clone TEgg006j10 Length = 3990 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ttctgctggcttgtttgctc 259 |||||||||||||||||||| Sbjct: 1376 ttctgctggcttgtttgctc 1357
>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence Length = 214859 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 cctcccgtgggagcaccacc 169 |||||||||||||||||||| Sbjct: 105248 cctcccgtgggagcaccacc 105229 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,925,614 Number of Sequences: 3902068 Number of extensions: 3925614 Number of successful extensions: 78786 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78362 Number of HSP's gapped (non-prelim): 424 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)