ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 44 0.51
2gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
3gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 42 2.0
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
6dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
7emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 2.0
8gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
9gb|AC149530.2| Xenopus tropicalis clone ISB-301B24, complete seq... 40 8.0
10gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 8.0
11gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial ... 40 8.0
12gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complet... 40 8.0
13ref|XM_750803.1| Aspergillus fumigatus Af293 mitochondrial DNA-d... 40 8.0
14emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chr... 40 8.0
15gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, compl... 40 8.0
16gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.0
17dbj|AK128701.1| Homo sapiens cDNA FLJ46868 fis, clone UTERU30124... 40 8.0
18gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete s... 40 8.0
19ref|NM_001015893.1| Xenopus tropicalis hypothetical protein LOC5... 40 8.0
20gb|AC012351.3|AC012351 Homo sapiens BAC clone CTD-2312I3 from 7p... 40 8.0
21gb|AC004933.1|AC004933 Homo sapiens PAC clone RP5-952L21 from 7p... 40 8.0
22emb|CR761985.2| Xenopus tropicalis finished cDNA, clone TEgg006j10 40 8.0
23gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromoso... 40 8.0

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 463     gcgcacgccggcgtcgacccaa 484
               ||||||||||||||||||||||
Sbjct: 1320441 gcgcacgccggcgtcgacccaa 1320420



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>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22,
              complete sequence
          Length = 156725

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 428    catttcaccgaacaggttgtg 448
              |||||||||||||||||||||
Sbjct: 108992 catttcaccgaacaggttgtg 109012



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>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 448    gtgcgccacaacgacgcgcacgccg 472
              |||||||||||| ||||||||||||
Sbjct: 126235 gtgcgccacaactacgcgcacgccg 126259



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 428      catttcaccgaacaggttgtg 448
                |||||||||||||||||||||
Sbjct: 16793430 catttcaccgaacaggttgtg 16793450



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 428      catttcaccgaacaggttgtg 448
                |||||||||||||||||||||
Sbjct: 16569503 catttcaccgaacaggttgtg 16569483



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>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1123_B08
          Length = 134028

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 428    catttcaccgaacaggttgtg 448
              |||||||||||||||||||||
Sbjct: 101728 catttcaccgaacaggttgtg 101708



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 461     acgcgcacgccggcgtcgacc 481
               |||||||||||||||||||||
Sbjct: 4268542 acgcgcacgccggcgtcgacc 4268522



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 428      catttcaccgaacaggttgtg 448
                |||||||||||||||||||||
Sbjct: 16887200 catttcaccgaacaggttgtg 16887220



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>gb|AC149530.2| Xenopus tropicalis clone ISB-301B24, complete sequence
          Length = 87416

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   ttctgctggcttgtttgctc 259
             ||||||||||||||||||||
Sbjct: 83940 ttctgctggcttgtttgctc 83921



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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cgcacgccggcgtcgaccca 483
              ||||||||||||||||||||
Sbjct: 600017 cgcacgccggcgtcgaccca 600036



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>gb|DQ232587.1| Rhodobacter sphaeroides 2.4.1 plasmid E, partial sequence
          Length = 37100

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   ccatcctcatcgccgcagcc 121
             ||||||||||||||||||||
Sbjct: 22042 ccatcctcatcgccgcagcc 22023



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>gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complete sequence
          Length = 210608

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tcagcgcggctccgaagcag 538
             ||||||||||||||||||||
Sbjct: 98553 tcagcgcggctccgaagcag 98534



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>ref|XM_750803.1| Aspergillus fumigatus Af293 mitochondrial DNA-directed RNA
           polymerase (Afu2g15610) partial mRNA
          Length = 4128

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 94  ccagcattccatcctcatcgccgc 117
           |||||||| |||||||||||||||
Sbjct: 433 ccagcatttcatcctcatcgccgc 410



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>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the 3'
              end of the gene for a novel protein (KIAA0515), the RNU62
              gene for U62 small nucleolar RNA, a novel gene identical to
              the RNU62 gene, the POMT1 gene for
              protein-O-mannosyltransferase 1, a novel gene, the gene for
              uridine-cytidine kinase 1 (UCK1) and three CpG islands,
              complete sequence
          Length = 147492

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cttttggctgcctcagctgc 200
              ||||||||||||||||||||
Sbjct: 130461 cttttggctgcctcagctgc 130442



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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   attctgctggcttgtttgct 258
             ||||||||||||||||||||
Sbjct: 27479 attctgctggcttgtttgct 27498



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 484     aggcgatgccggcgtcgacc 503
               ||||||||||||||||||||
Sbjct: 3700322 aggcgatgccggcgtcgacc 3700303



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>dbj|AK128701.1| Homo sapiens cDNA FLJ46868 fis, clone UTERU3012414, highly  similar
           to Guanine nucleotide-binding protein, alpha-12 subunit
          Length = 3781

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 519 tcagcgcggctccgaagcag 538
           ||||||||||||||||||||
Sbjct: 308 tcagcgcggctccgaagcag 289



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>gb|AC084197.1| Caenorhabditis elegans cosmid Y73B6BL, complete sequence
          Length = 216143

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gccgtgtaccgtgtgtggct 138
             ||||||||||||||||||||
Sbjct: 21838 gccgtgtaccgtgtgtggct 21819



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>ref|NM_001015893.1| Xenopus tropicalis hypothetical protein LOC548647 (LOC548647), mRNA
          Length = 3990

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  ttctgctggcttgtttgctc 259
            ||||||||||||||||||||
Sbjct: 1376 ttctgctggcttgtttgctc 1357



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>gb|AC012351.3|AC012351 Homo sapiens BAC clone CTD-2312I3 from 7p22, complete sequence
          Length = 150983

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   tcagcgcggctccgaagcag 538
             ||||||||||||||||||||
Sbjct: 32302 tcagcgcggctccgaagcag 32283



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>gb|AC004933.1|AC004933 Homo sapiens PAC clone RP5-952L21 from 7p22-p2, complete sequence
          Length = 124675

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   tcagcgcggctccgaagcag 538
             ||||||||||||||||||||
Sbjct: 31242 tcagcgcggctccgaagcag 31261



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>emb|CR761985.2| Xenopus tropicalis finished cDNA, clone TEgg006j10
          Length = 3990

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  ttctgctggcttgtttgctc 259
            ||||||||||||||||||||
Sbjct: 1376 ttctgctggcttgtttgctc 1357



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>gb|AC169088.2| Gallus gallus BAC clone CH261-100B3 from chromosome ul, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    cctcccgtgggagcaccacc 169
              ||||||||||||||||||||
Sbjct: 105248 cctcccgtgggagcaccacc 105229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,925,614
Number of Sequences: 3902068
Number of extensions: 3925614
Number of successful extensions: 78786
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78362
Number of HSP's gapped (non-prelim): 424
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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