ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 93 8e-23
2CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protei... 29 9.9
3MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A 29 9.9

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 93.2 bits (230), Expect(2) = 8e-23
 Identities = 54/108 (50%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
 Frame = +2

Query: 107 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 286
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 287 PPE-XXXXXXXXXXXXXXXNSAAVIKFLDEMAKIGFPGAKLVSDAVVK 427
           PPE                N  AV KFL+E+AKI FPGAK VSDAV K
Sbjct: 61  PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAK 108



 Score = 33.1 bits (74), Expect(2) = 8e-23
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +1

Query: 415 RGGQVRLSPAIVFILDKVAPFV 480
           + G   LSPAI FIL+KVAPFV
Sbjct: 108 KSGTTPLSPAIAFILEKVAPFV 129



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>CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin)|
          Length = 3097

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 480  DEGRNLVQDEDDGGGEPDLTTASLTSL 400
            D   N++  +D+GGGE D+T   +T L
Sbjct: 2954 DVRENIINYDDEGGGEDDMTAFDITPL 2980



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>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A|
          Length = 329

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 94  EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 189
           EG E   R    G    QQ+L+QGWQ+ +R R
Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,114,612
Number of Sequences: 219361
Number of extensions: 926090
Number of successful extensions: 2731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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