Clone Name | bart18c01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SRS1_ORYSA (P83649) Salt-stress root protein RS1 | 93 | 8e-23 | 2 | CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protei... | 29 | 9.9 | 3 | MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A | 29 | 9.9 |
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>SRS1_ORYSA (P83649) Salt-stress root protein RS1| Length = 204 Score = 93.2 bits (230), Expect(2) = 8e-23 Identities = 54/108 (50%), Positives = 59/108 (54%), Gaps = 1/108 (0%) Frame = +2 Query: 107 MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 286 MTSVWKTKVL GL+ EFLKSFN TELEPKVVE +E+S Sbjct: 1 MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60 Query: 287 PPE-XXXXXXXXXXXXXXXNSAAVIKFLDEMAKIGFPGAKLVSDAVVK 427 PPE N AV KFL+E+AKI FPGAK VSDAV K Sbjct: 61 PPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAK 108 Score = 33.1 bits (74), Expect(2) = 8e-23 Identities = 15/22 (68%), Positives = 17/22 (77%) Frame = +1 Query: 415 RGGQVRLSPAIVFILDKVAPFV 480 + G LSPAI FIL+KVAPFV Sbjct: 108 KSGTTPLSPAIAFILEKVAPFV 129
>CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin)| Length = 3097 Score = 28.9 bits (63), Expect = 9.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -3 Query: 480 DEGRNLVQDEDDGGGEPDLTTASLTSL 400 D N++ +D+GGGE D+T +T L Sbjct: 2954 DVRENIINYDDEGGGEDDMTAFDITPL 2980
>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A| Length = 329 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +1 Query: 94 EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 189 EG E R G QQ+L+QGWQ+ +R R Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,114,612 Number of Sequences: 219361 Number of extensions: 926090 Number of successful extensions: 2731 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2730 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)