Clone Name | bart18b12 |
---|---|
Clone Library Name | barley_pub |
>5NG4_PINTA (Q6J163) Auxin-induced protein 5NG4| Length = 410 Score = 75.5 bits (184), Expect = 7e-14 Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Frame = +1 Query: 25 LASRDLPGVAMAMQEHKPL-AAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYRQAIATL 201 +AS + + M E L AAM+ +Q YA + ++A + G+S +VF VYR +A + Sbjct: 1 MASNIMQRCNVFMSERVKLHAAMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALM 60 Query: 202 VLVPITLLANRKRLREIVCIGTTGFAL-VFLASLVGATANQYMYYQGMYLGSSSMATAMT 378 ++ P +K + T F + FL +L G T + + L + A+A+ Sbjct: 61 LIGPCAYFLEKKERPAL----TLSFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQ 116 Query: 379 NLIPAITFVLATSVCLESVEIRKPRSMAKVFGTAVCVGG 495 N +PAITF++A ++ LE V I + +AK+ GT CV G Sbjct: 117 NSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSG 155
>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)| (Forkhead-related transcription factor 5) (FREAC-5) (Myeloid factor-alpha) Length = 439 Score = 32.0 bits (71), Expect = 0.92 Identities = 23/88 (26%), Positives = 33/88 (37%) Frame = +3 Query: 198 PCPRPHHLACQQEKAEGDCLHRNDGLRAGVLGLSCRGDGESVHVLPRHVPGIIVHGDGHD 377 PC PH + +A HR L +SC+G GE V L R P G Sbjct: 293 PCCSPHLVLSLGRRARVWRRHREADASLSALRVSCKGSGERVQGLRRVCP----RPRGAT 348 Query: 378 EPYTGDHLRAGDVSMSRKRGDQEAAKHG 461 P + D + ++R +E +G Sbjct: 349 APCSSDRQACRTILQQQQRHQEEDCANG 376
>YYAM_BACSU (P37511) Hypothetical transport protein yyaM| Length = 305 Score = 31.2 bits (69), Expect = 1.6 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = +1 Query: 142 FSRGMSPMVFVVYRQAIATLVLVPITLLANRKRLREIVCIGTTGFALVFLASLVGATANQ 321 F + +P+ Y I + L+ ++L ++ + IG G A+ F+A Sbjct: 176 FVKDGTPLSTTTYTMVIGAVSLIVVSLFTSKPVSLSNIPIGVWG-AIAFMAFFTSVLG-- 232 Query: 322 YMYY-QGMYLGSSSMATAMTNLIPAITFVLATSV 420 Y+++ QG+ +S + NL+P +T +++ +V Sbjct: 233 YLWWNQGIKEIGASKTSLFFNLVPVVTMIISFAV 266
>Y2353_MYCBO (P63400) Hypothetical ABC transporter ATP-binding protein Mb2353c| Length = 697 Score = 30.0 bits (66), Expect = 3.5 Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Frame = +1 Query: 4 CNRPPTRLASRDLPGVAMAMQEHKPLAAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYR 183 C P R+ G A PL + Q A A+ S V V + Sbjct: 6 CGPEPGRIGEVTPLGPCPAQHRGGPLRPSELAQASVMAALCAVTAIIS------VVVPFA 59 Query: 184 QAIATLVLVPITLLANRKRLREI----VCIGTTGFALVFLASLVGATANQYM 327 +A L VP LLA R RLR + V G F + L +G + Y+ Sbjct: 60 AGLALLGTVPTGLLAYRYRLRVLAAATVAAGMIAFLIAGLGGFMGVVHSAYI 111
>Y2326_MYCTU (P63399) Hypothetical ABC transporter ATP-binding protein| Rv2326c/MT2388 Length = 697 Score = 30.0 bits (66), Expect = 3.5 Identities = 30/112 (26%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Frame = +1 Query: 4 CNRPPTRLASRDLPGVAMAMQEHKPLAAMVVVQCIYAAMALWAKAMFSRGMSPMVFVVYR 183 C P R+ G A PL + Q A A+ S V V + Sbjct: 6 CGPEPGRIGEVTPLGPCPAQHRGGPLRPSELAQASVMAALCAVTAIIS------VVVPFA 59 Query: 184 QAIATLVLVPITLLANRKRLREI----VCIGTTGFALVFLASLVGATANQYM 327 +A L VP LLA R RLR + V G F + L +G + Y+ Sbjct: 60 AGLALLGTVPTGLLAYRYRLRVLAAATVAAGMIAFLIAGLGGFMGVVHSAYI 111
>GAG_MLVFP (P26805) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 537 Score = 30.0 bits (66), Expect = 3.5 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = -2 Query: 414 RRQHEGDRRYKVRHGRRHGR*SQVHALVVHVLIRRRPDKRGQEHQR 277 RR+ E +RR K R RRH S++ A VV +R D++G E +R Sbjct: 453 RRRAEDERREKERDRRRHREMSKLLATVVS---GQRQDRQGGERRR 495
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 26.6 bits (57), Expect(2) = 7.0 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +3 Query: 147 PRHEPHGLRRLQAGHRHPCPRPHH 218 PR PH R +A HR P PHH Sbjct: 1217 PRPHPH---RPRASHRAPAAAPHH 1237 Score = 20.8 bits (42), Expect(2) = 7.0 Identities = 7/16 (43%), Positives = 8/16 (50%) Frame = +2 Query: 92 WWCSASTRPWRSGPRP 139 WW PW +GP P Sbjct: 1194 WWAPPPP-PWAAGPPP 1208
>ARMX1_MOUSE (Q9CX83) Armadillo repeat-containing X-linked protein 1| Length = 456 Score = 28.9 bits (63), Expect = 7.8 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%) Frame = +3 Query: 228 QQEKAEGDCLHRNDGLRAGVLGLSCRG----DGES---VHVLPRHVPGIIVHGDGHDEPY 386 ++E+ E C + + +G+ RG D +S V+V P + PG V + H E Sbjct: 45 EEEEEEKSCSDKTEKELKTNVGVGARGKPQDDSKSKVEVNVGPENGPG--VKKEVHPESQ 102 Query: 387 TGDHLRAGDVSMSRKRGDQEAAKHGQGI 470 +G L A ++ + +Q AK G+GI Sbjct: 103 SGGGLEAKAKALFKTLKEQARAKAGRGI 130
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1 Query: 358 TMIPGTCLGSTCTDSPSPRQERPRTPARSPSFRCKQSP 245 T PG G T P P + PR+P+RSPS +SP Sbjct: 326 TFRPGAPSGQTV---PPPLPKPPRSPSRSPSHSPNRSP 360 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,184,041 Number of Sequences: 219361 Number of extensions: 1325500 Number of successful extensions: 5216 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4811 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5194 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)