ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
2dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
5dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6gb|AY108260.1| Zea mays PCO082493 mRNA sequence 125 1e-25
7emb|BX571870.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 46 0.11
8dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 46 0.11
9ref|XM_474441.1| Oryza sativa (japonica cultivar-group), predic... 44 0.43
10emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4,... 44 0.43
11emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 44 0.43
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
13dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 44 0.43
14dbj|AK107360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
15emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.43
16emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.7
17ref|NM_001031518.1| Gallus gallus somatostatin receptor 4 (SSTR4... 40 6.7
18emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.7
19gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.7
20gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 6.7
21gb|AC144734.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
22gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.7
23gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Ca... 40 6.7
24gb|AC092357.2| Homo sapiens chromosome 16 clone RP11-332P24, com... 40 6.7
25gb|DQ069274.1| Gallus gallus somatostatin receptor type 4 precur... 40 6.7
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
28gb|AC016761.10| Homo sapiens BAC clone RP11-538A12 from 2, compl... 40 6.7
29gb|AC009236.4| Homo sapiens BAC clone RP11-421J10 from 2, comple... 40 6.7
30gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, comp... 40 6.7
31dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
32gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Minus

                                                                            
Query: 82       gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
                ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15401190 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 15401131

                                                                            
Query: 142      ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
                ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 15401130 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 15401071

                                                 
Query: 202      gtcctcgtccccatcaccttgcttgccaacagg 234
                |||||||||||||||||| | || |||||||||
Sbjct: 15401070 gtcctcgtccccatcaccctcctcgccaacagg 15401038



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                            
Query: 82       gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
                ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 15414070 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 15414011

                                                                            
Query: 142      ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
                |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 15414010 ttcaccgggggcatgagcaccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 15413951

                              
Query: 202      gtcctcgtccccat 215
                 |||||||||||||
Sbjct: 15413950 ttcctcgtccccat 15413937



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                            
Query: 326      tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 385
                |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 15413270 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 15413211

                                                   
Query: 386      taccggcgatcaccttcgtgctggcgacgtcagta 420
                |||| ||||||||||||||| ||||  ||||||||
Sbjct: 15413210 tacccgcgatcaccttcgtgatggcagcgtcagta 15413176



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 458      tggccaaggtattcggcaccgccgtctgcgtcggagg 494
                |||| ||| ||||||||||| ||||||||||||||||
Sbjct: 15411332 tggcgaagatattcggcaccaccgtctgcgtcggagg 15411296



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 358      tccatggcgacggccatgac 377
                ||||||||||||||||||||
Sbjct: 15400576 tccatggcgacggccatgac 15400557



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>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1299_A11
          Length = 160099

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Minus

                                                                         
Query: 82    gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
             ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 50482 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 50423

                                                                         
Query: 142   ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
             ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 50422 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 50363

                                              
Query: 202   gtcctcgtccccatcaccttgcttgccaacagg 234
             |||||||||||||||||| | || |||||||||
Sbjct: 50362 gtcctcgtccccatcaccctcctcgccaacagg 50330



 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                         
Query: 82    gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
             ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 63362 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 63303

                                                                         
Query: 142   ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
             |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 63302 ttcaccgggggcatgagcaccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 63243

                           
Query: 202   gtcctcgtccccat 215
              |||||||||||||
Sbjct: 63242 ttcctcgtccccat 63229



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                         
Query: 326   tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 385
             |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 62562 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 62503

                                                
Query: 386   taccggcgatcaccttcgtgctggcgacgtcagta 420
             |||| ||||||||||||||| ||||  ||||||||
Sbjct: 62502 tacccgcgatcaccttcgtgatggcagcgtcagta 62468



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 458   tggccaaggtattcggcaccgccgtctgcgtcggagg 494
             |||| ||| ||||||||||| ||||||||||||||||
Sbjct: 60624 tggcgaagatattcggcaccaccgtctgcgtcggagg 60588



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   tccatggcgacggccatgac 377
             ||||||||||||||||||||
Sbjct: 49868 tccatggcgacggccatgac 49849



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>dbj|AK105859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H10, full
           insert sequence
          Length = 1716

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                       
Query: 82  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
           ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 172 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 231

                                                                       
Query: 142 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
           ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 232 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 291

                                            
Query: 202 gtcctcgtccccatcaccttgcttgccaacagg 234
           |||||||||||||||||| | || |||||||||
Sbjct: 292 gtcctcgtccccatcaccctcctcgccaacagg 324



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 tccatggcgacggccatgac 377
           ||||||||||||||||||||
Sbjct: 671 tccatggcgacggccatgac 690



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>dbj|AK068810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159I18, full
           insert sequence
          Length = 1205

 Score =  168 bits (85), Expect = 1e-38
 Identities = 136/153 (88%)
 Strand = Plus / Plus

                                                                       
Query: 82  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
           ||||| ||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 173 gcggcgatggtggcggcgcagtgcatctacgcggccatgacgctctgggccaaggccatg 232

                                                                       
Query: 142 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
           ||| |||| ||| | |||||| || |||||||||||||| | |||||||||| |||||| 
Sbjct: 233 ttcggccgtggcgtcagccccgtgatcttcgtcgtctaccgccaggccatcggcaccctc 292

                                            
Query: 202 gtcctcgtccccatcaccttgcttgccaacagg 234
           |||||||||||||||||| | || |||||||||
Sbjct: 293 gtcctcgtccccatcaccctcctcgccaacagg 325



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 358 tccatggcgacggccatgac 377
           ||||||||||||||||||||
Sbjct: 453 tccatggcgacggccatgac 472



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>dbj|AK070341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full
            insert sequence
          Length = 3713

 Score =  147 bits (74), Expect = 4e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                        
Query: 82   gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
            ||||| ||||||| || ||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 2401 gcggcgatggtggcggcgcagtgcatctacgcggcgctggcgctctgggccaaggccgtg 2460

                                                                        
Query: 142  ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
            |||| | | ||||||||| |||||||||||||||||||| | ||||||||||||||| | 
Sbjct: 2461 ttcaccgggggcatgagcgccatggtcttcgtcgtctaccgccaggccatcgccaccgtc 2520

                          
Query: 202  gtcctcgtccccat 215
             |||||||||||||
Sbjct: 2521 ttcctcgtccccat 2534



 Score =  105 bits (53), Expect = 1e-19
 Identities = 140/169 (82%)
 Strand = Plus / Plus

                                                                        
Query: 326  tgtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaacctta 385
            |||||||||| ||| || | |||||||| ||||| ||||||||||||||||  ||||| |
Sbjct: 2642 tgtactaccagggcctgcatctgggatcgtcgtcgatggcgacggccatgagcaacctga 2701

                                                                        
Query: 386  taccggcgatcaccttcgtgctggcgacgtcagtatgtctagaaagcgtggagatcagga 445
            |||| ||||||||||||||| ||||  |||||||| | |||||||  |||||  ||||||
Sbjct: 2702 tacccgcgatcaccttcgtgatggcagcgtcagtaggactagaaaaggtggacctcagga 2761

                                                             
Query: 446  agccgcgaagcatggccaaggtattcggcaccgccgtctgcgtcggagg 494
                | | ||| |||| ||| ||||||||||| ||||||||||||||||
Sbjct: 2762 gagtgaggagcttggcgaagatattcggcaccaccgtctgcgtcggagg 2810



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>gb|AY108260.1| Zea mays PCO082493 mRNA sequence
          Length = 838

 Score =  125 bits (63), Expect = 1e-25
 Identities = 183/223 (82%)
 Strand = Plus / Plus

                                                                       
Query: 267 gacgggcttcgcgctggtgttcttggcctctcttgtcggggcgacggcgaatcagtacat 326
           |||||||||| ||||||| ||| | ||||| ||||||||||| |||| ||| |||| |||
Sbjct: 287 gacgggcttctcgctggtcttcgtcgcctcccttgtcggggcaacggtgaaccagtgcat 346

                                                                       
Query: 327 gtactaccaaggcatgtacctgggatcatcgtccatggcgacggccatgacgaaccttat 386
           ||||||||||||  || | ||||| || ||||||||||| ||||||||||| ||| | ||
Sbjct: 347 gtactaccaaggggtgaatctgggctcgtcgtccatggcaacggccatgaccaacttgat 406

                                                                       
Query: 387 accggcgatcaccttcgtgctggcgacgtcagtatgtctagaaagcgtggagatcaggaa 446
            || || |||||||||||  ||||| | |||||  | ||||| || ||||||  ||||| 
Sbjct: 407 ccccgccatcaccttcgtcatggcggcatcagtcggcctagagagggtggaggccaggag 466

                                                      
Query: 447 gccgcgaagcatggccaaggtattcggcaccgccgtctgcgtc 489
           |||| | ||| |||||||| | |||||||| ||||||||||||
Sbjct: 467 gccgaggagcctggccaagatcttcggcacggccgtctgcgtc 509



 Score =  119 bits (60), Expect = 9e-24
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                       
Query: 82  gcggccatggtggtggtgcagtgcatctacgcggccatggcgctctgggccaaggccatg 141
           |||||||||||||||  ||||||||||||||| ||  | ||||||| | |||||||   |
Sbjct: 99  gcggccatggtggtgacgcagtgcatctacgccgctctagcgctcttgtccaaggcggcg 158

                                                                       
Query: 142 ttcagccgcggcatgagccccatggtcttcgtcgtctacaggcaggccatcgccaccctt 201
           |||| | |||||||||||||| |||| ||||||||||||||||||||| |||||||| ||
Sbjct: 159 ttcaccggcggcatgagccccctggtgttcgtcgtctacaggcaggccgtcgccaccatt 218

                       
Query: 202 gtcctcgtcccc 213
           || |||||||||
Sbjct: 219 gtactcgtcccc 230



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>emb|BX571870.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              12/17
          Length = 348505

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 48     cgttgccatggccatgcaggagcataagccgctgg 82
              |||| ||||| ||||||||||||||||| ||||||
Sbjct: 227941 cgtttccatgaccatgcaggagcataaggcgctgg 227907



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 40      ctcccgggcgttgccatggccatgcaggagcataagccgctgg 82
               ||||||| |||  ||||| ||||||||||||||||| ||||||
Sbjct: 1399833 ctcccggacgtctccatgaccatgcaggagcataaggcgctgg 1399875



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>ref|XM_474441.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1239

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 73  aagccgctggcggccatggtggtggtgcag 102
           |||||| ||||||| |||||||||||||||
Sbjct: 31  aagccggtggcggcgatggtggtggtgcag 60



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>emb|AL606686.3|OSJN00084 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070M12,
              complete sequence
          Length = 144670

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 73     aagccgctggcggccatggtggtggtgcag 102
              |||||| ||||||| |||||||||||||||
Sbjct: 139512 aagccggtggcggcgatggtggtggtgcag 139541



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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 73     aagccgctggcggccatggtggtggtgcag 102
              |||||| ||||||| |||||||||||||||
Sbjct: 110031 aagccggtggcggcgatggtggtggtgcag 110002



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 73       aagccgctggcggccatggtggtggtgcag 102
                |||||| ||||||| |||||||||||||||
Sbjct: 35203000 aagccggtggcggcgatggtggtggtgcag 35203029



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 355    tcgtccatggcgacggccatgacgaa 380
              ||||||||||||||||| ||||||||
Sbjct: 480120 tcgtccatggcgacggctatgacgaa 480145



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>dbj|AK107360.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-A04, full
           insert sequence
          Length = 1551

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 73  aagccgctggcggccatggtggtggtgcag 102
           |||||| ||||||| |||||||||||||||
Sbjct: 38  aagccggtggcggcgatggtggtggtgcag 67



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>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 73    aagccgctggcggccatggtggtggtgcag 102
             |||||| ||||||| |||||||||||||||
Sbjct: 47015 aagccggtggcggcgatggtggtggtgcag 47044



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 469     ttcggcaccgccgtctgcgtcggag 493
               |||||||||||||||||| ||||||
Sbjct: 2366669 ttcggcaccgccgtctgcttcggag 2366693



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>ref|NM_001031518.1| Gallus gallus somatostatin receptor 4 (SSTR4), mRNA
          Length = 1228

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 78  gctggcggccatggtggtggtgcagtgcatctacgc 113
           |||||| | |||||||||| | ||||||||||||||
Sbjct: 148 gctggcaggcatggtggtgatccagtgcatctacgc 183



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 82      gcggccatggtggtggtgca 101
               ||||||||||||||||||||
Sbjct: 4713922 gcggccatggtggtggtgca 4713903



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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 205     ctcgtccccatcaccttgcttgcc 228
               |||||||||| |||||||||||||
Sbjct: 1946764 ctcgtccccaccaccttgcttgcc 1946741



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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 117    catggcgctctgggccaaggccat 140
              |||| |||||||||||||||||||
Sbjct: 140444 catgtcgctctgggccaaggccat 140467



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>gb|AC144734.1| Oryza sativa (japonica cultivar-group) chromosome 11 plasmid clone
           OSJNBa0026O24_C01, complete sequence
          Length = 2105

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 124 ctctgggccaaggccatgttcagc 147
           ||||||||||||| ||||||||||
Sbjct: 804 ctctgggccaaggacatgttcagc 781



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     tctacgcggccatggcgctc 126
               ||||||||||||||||||||
Sbjct: 2508469 tctacgcggccatggcgctc 2508450



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      cggccatggtggtggtgcag 102
               ||||||||||||||||||||
Sbjct: 1664299 cggccatggtggtggtgcag 1664318



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>gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 159688

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ctcccgggcgttgccatggc 59
             ||||||||||||||||||||
Sbjct: 91439 ctcccgggcgttgccatggc 91458



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>gb|AC092357.2| Homo sapiens chromosome 16 clone RP11-332P24, complete sequence
          Length = 191768

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    ctggcggccatggtggtggtgcag 102
             ||||||||| ||||||||||||||
Sbjct: 68035 ctggcggccctggtggtggtgcag 68058



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>gb|DQ069274.1| Gallus gallus somatostatin receptor type 4 precursor (SS4R) mRNA,
           complete cds
          Length = 1228

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 78  gctggcggccatggtggtggtgcagtgcatctacgc 113
           |||||| | |||||||||| | ||||||||||||||
Sbjct: 148 gctggcaggcatggtggtgatccagtgcatctacgc 183



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 124      ctctgggccaaggccatgttcagc 147
                ||||||||||||| ||||||||||
Sbjct: 26946024 ctctgggccaaggacatgttcagc 26946001



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       gccatggccatgcaggagca 71
                ||||||||||||||||||||
Sbjct: 21988714 gccatggccatgcaggagca 21988733



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>gb|AC016761.10| Homo sapiens BAC clone RP11-538A12 from 2, complete sequence
          Length = 159338

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   aacaggaaaaggctgaggga 248
             ||||||||||||||||||||
Sbjct: 85290 aacaggaaaaggctgaggga 85271



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>gb|AC009236.4| Homo sapiens BAC clone RP11-421J10 from 2, complete sequence
          Length = 178911

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  gtcctcgtccccatcacctt 221
            ||||||||||||||||||||
Sbjct: 5695 gtcctcgtccccatcacctt 5676



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>gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, complete sequence
          Length = 151051

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     ctggcggccatggtggtggtgcag 102
              ||||||||| ||||||||||||||
Sbjct: 118292 ctggcggccctggtggtggtgcag 118315



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>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    gccatggccatgcaggagca 71
             ||||||||||||||||||||
Sbjct: 37336 gccatggccatgcaggagca 37355



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 124      ctctgggccaaggccatgttcagc 147
                ||||||||||||| ||||||||||
Sbjct: 27273077 ctctgggccaaggacatgttcagc 27273054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,469,633
Number of Sequences: 3902068
Number of extensions: 3469633
Number of successful extensions: 66283
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65717
Number of HSP's gapped (non-prelim): 566
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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