ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart18b05 |
|---|---|
| Clone Library Name | barley_pub |
>RAP1_ARATH (Q39204) Transcription factor AtMYC2 (R-homologous Arabidopsis| protein 1) (RAP-1) (Basic helix-loop-helix protein 6) (bHLH6) (AtbHLH006) (rd22BP1) Length = 623 Score = 36.2 bits (82), Expect = 0.059 Identities = 18/69 (26%), Positives = 33/69 (47%) Frame = +2 Query: 302 HSEAXXXXXXXINAHLAALRKMIPDTKQMDKAALLARVVDQVRHLKRRASEAAQQTPGLP 481 H EA +N ALR ++P+ +MDKA+LL + + LK + + + + Sbjct: 453 HVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAIAYINELKSKVVKTESEKLQIK 512 Query: 482 PEADMVSVE 508 + + V +E Sbjct: 513 NQLEEVKLE 521
>PIF4_ARATH (Q8W2F3) Phytochrome-interacting factor 4 (Basic helix-loop-helix| protein 9) (bHLH9) (AtbHLH009) (Short under red-light 2) Length = 430 Score = 35.8 bits (81), Expect = 0.078 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 13/81 (16%) Frame = +2 Query: 284 ARALRIHSEAXXXXXXXINAHLAALRKMIPDTKQMDKAALLARVVDQVRHLKRR------ 445 +RA +H+ + IN + AL+++IP + DKA++L +D ++ L+ + Sbjct: 256 SRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVMWM 315 Query: 446 -------ASEAAQQTPGLPPE 487 A+ A PG+ P+ Sbjct: 316 GSGMAAAAASAPMMFPGVQPQ 336
>ICE1_ARATH (Q9LSE2) Transcription factor ICE1 (Inducer of CBF expression 1)| (Basic helix-loop-helix protein 116) (bHLH116) (AtbHLH116) Length = 494 Score = 35.0 bits (79), Expect = 0.13 Identities = 14/50 (28%), Positives = 28/50 (56%) Frame = +2 Query: 335 INAHLAALRKMIPDTKQMDKAALLARVVDQVRHLKRRASEAAQQTPGLPP 484 +N L LR ++P +MD+A++L +D ++ L +R ++ + PP Sbjct: 319 LNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPP 368
>TT8_ARATH (Q9FT81) TRANSPARENT TESTA 8 protein (Basic helix-loop-helix| protein 42) (bHLH42) (AtbHLH042) Length = 518 Score = 34.3 bits (77), Expect = 0.23 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 302 HSEAXXXXXXXINAHLAALRKMIPDTKQMDKAALLARVVDQVRHLKRRASE 454 H A +N LR M+P +MDK ++L + V HL++R E Sbjct: 364 HVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHE 414
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated| protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008) Length = 524 Score = 34.3 bits (77), Expect = 0.23 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 12/124 (9%) Frame = +2 Query: 104 AAACQSLQQGNEL------------MPHGDCDPTVCRGPAMAPRQATSAPPAGPPEVXXX 247 A C S+ GN L H + C + AGP Sbjct: 279 AVVCSSVGSGNSLDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLG 338 Query: 248 XXXXXXXXXXXEARALRIHSEAXXXXXXXINAHLAALRKMIPDTKQMDKAALLARVVDQV 427 +R+ +H+ + IN + AL+++IP+ ++DKA++L ++ + Sbjct: 339 SK---------RSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYL 389 Query: 428 RHLK 439 + L+ Sbjct: 390 KSLQ 393
>SPT_ARATH (Q9FUA4) Protein SPATULA| Length = 373 Score = 34.3 bits (77), Expect = 0.23 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = +2 Query: 287 RALRIHSEAXXXXXXXINAHLAALRKMIPDTKQMDKAALLARVVDQVRHLK 439 RA +H+ + IN + AL+ +IP++ + DKA++L ++ ++ L+ Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQ 247
>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 30.0 bits (66), Expect = 4.3 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 152 GDCDPTVCRGPAMAPRQATSAPPAGPP 232 G C P C G + PR+ S P GPP Sbjct: 93 GPCTPRRCLGSLVLPRKLQSRPSPGPP 119
>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +2 Query: 152 GDCDPTVCRGPAMAPRQATSAPPAGPP 232 G C P C G + PR+ + P GPP Sbjct: 93 GPCTPRCCLGSLVLPRKLQTRPSPGPP 119
>ADRB3_CAPHI (Q9XT57) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 405 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 133 SLLQRLACRCRPAKHLTASA 74 S +RL CRCRP +HL A++ Sbjct: 354 SAFRRLLCRCRPEEHLAAAS 373
>ADRB3_BOVIN (P46626) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 405 Score = 29.6 bits (65), Expect = 5.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 133 SLLQRLACRCRPAKHLTASA 74 S +RL CRCRP +HL A++ Sbjct: 354 SAFRRLLCRCRPEEHLAAAS 373
>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)| Length = 326 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 131 GNELMPHGDCDPTVCRGPAMAPRQATSAPPAGPP 232 GN + H PT G A +PR +T P GPP Sbjct: 83 GNATISHATVSPTT-NGTATSPRSSTVGPHPGPP 115
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 107 AACQSLQQGNELM-PHGDCDPTVCRGPAMAPRQATSAPPAGPP 232 A CQSLQ+ P GD P RGP P + P GPP Sbjct: 20 ATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPP 62
>RDRP_AHNNV (Q9DIC5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) (Protein A) Length = 981 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -3 Query: 391 VHLLGIRDHLPERGQMSVDPLPAPA---LGLAVDPQC 290 VHL DHL E Q+ + L APA LGL DP C Sbjct: 610 VHL----DHLAELSQLLANELQAPAVTRLGLKYDPDC 642
>VE4_HPV47 (P22421) Probable protein E4| Length = 304 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 125 QQGNELMPHGDCDPTVCRGPAMAPRQATSAPPAGPP 232 +QG+ GD DP RGP + P T PP PP Sbjct: 137 EQGDRKRTKGDPDPDPGRGPVLKP---TLPPPPPPP 169
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 125 QQGNELMPHGDCDPTVCRGPAMAPRQATSAPPAGPP 232 Q+ ++P G P G + AP A SAPPA PP Sbjct: 101 QESKPVVPQG---PGSAPGVSSAPPPAVSAPPANPP 133
>PER_DROME (P07663) Period circadian protein (Clock-6 protein) (CLK-6)| Length = 1224 Score = 29.3 bits (64), Expect = 7.3 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = -1 Query: 228 GPAGGAEVACRGAIAGPLHTVGSQSPCGISSFPCC 124 G AGG A A AG +VGS +P G SS+P C Sbjct: 898 GGAGGGGGAGAAAAAGASSSVGSSTP-GPSSYPTC 931
>EGL1_ARATH (Q9CAD0) Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic| helix-loop-helix protein 2) (bHLH2) (AtbHLH002) (AtMyc-146) Length = 596 Score = 29.3 bits (64), Expect = 7.3 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +2 Query: 335 INAHLAALRKMIPDTKQMDKAALLARVVDQVRHLKRRASE 454 +N LR +IP ++DK ++L ++ ++ L++R E Sbjct: 417 LNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,635,595 Number of Sequences: 219361 Number of extensions: 1272140 Number of successful extensions: 4566 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4565 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
