ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475649.1| Oryza sativa (japonica cultivar-group), predic... 145 2e-31
2dbj|AK110619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
4dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
5dbj|AK106292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 2e-21
6dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic D... 111 2e-21
7gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
8gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
10gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
11ref|NM_188475.1| Oryza sativa (japonica cultivar-group), predic... 60 8e-06
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 8e-06
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
14dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
15dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
16dbj|AK106649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
17dbj|AK068593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
18dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
19dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
20ref|XM_482542.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.12
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
22dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
23dbj|AK109616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
24gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.47
25gb|BC018788.1| Homo sapiens hyaluronan binding protein 4, mRNA (... 42 1.8
26gb|BC032046.1| Mus musculus, clone IMAGE:4193217, mRNA 42 1.8
27emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.8
28emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 42 1.8
29emb|AJ271405.1|SRO271405 Streptomyces rochei sttO gene, sttN gen... 42 1.8
30emb|CR613789.1| full-length cDNA clone CS0DD008YH07 of Neuroblas... 42 1.8
31emb|CR613476.1| full-length cDNA clone CS0DI021YD21 of Placenta ... 42 1.8
32emb|CR596448.1| full-length cDNA clone CS0DI012YK14 of Placenta ... 42 1.8
33gb|AF241831.1|AF241831 Homo sapiens intracellular hyaluronan-bin... 42 1.8
34ref|NM_014282.1| Homo sapiens hyaluronan binding protein 4 (HABP... 42 1.8
35emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chr... 42 1.8
36gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome... 40 7.3
37ref|XM_417927.1| PREDICTED: Gallus gallus similar to FLJ00141 pr... 40 7.3
38ref|XM_323504.1| Neurospora crassa OR74A hypothetical protein ( ... 40 7.3
39ref|XM_955630.1| Neurospora crassa OR74A hypothetical protein ( ... 40 7.3
40gb|AF084950.1| Bacillus amyloliquefaciens signal peptidase type ... 40 7.3
41gb|AC147369.3| Mus musculus BAC clone RP24-392B5 from chromosome... 40 7.3
42gb|AC008167.5| Homo sapiens BAC clone RP11-172O13 from 7, comple... 40 7.3
43gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome ... 40 7.3
44ref|XM_548054.2| PREDICTED: Canis familiaris similar to C1q-rela... 40 7.3
45emb|AL031678.2|HS816K17 Human DNA sequence from clone RP4-816K17... 40 7.3
46emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 7.3
47emb|AL513445.1|NCB7A16 Neurospora crassa DNA linkage group V BAC... 40 7.3
48emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin bio... 40 7.3
49gb|AC160760.4| Mus musculus BAC clone RP23-449G13 from chromosom... 40 7.3
50emb|CR391517.1| Gallus gallus finished cDNA, clone ChEST296p18 40 7.3
51gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequ... 40 7.3 
>ref|XM_475649.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 816

 Score =  145 bits (73), Expect = 2e-31
 Identities = 168/199 (84%), Gaps = 3/199 (1%)
 Strand = Plus / Plus

                                                                       
Query: 262 gtcggggaggagcgcgacgg---aggcgagggcactgaggatccacagcgaggccgagcg 318
           |||||||||||||||| |||   |||||| |||  ||| ||||||||||||||| ||| |
Sbjct: 165 gtcggggaggagcgcggcggctcaggcgacggcgatgacgatccacagcgaggctgagag 224

                                                                       
Query: 319 ccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccctgatac 378
            ||||| ||||||||||| || ||||| |||||  | || |||| |||  |||||||| |
Sbjct: 225 gcggcggcgggagaggattaatgctcacctggctacactgaggaggatactccctgatgc 284

                                                                       
Query: 379 caagcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaa 438
            |||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| ||
Sbjct: 285 taagcagatggacaaggccaccttgctagccagcgtggtgaaccaagtgaagcacctcaa 344

                              
Query: 439 gaggagagccagcgaggcc 457
           || |||||||| |||||||
Sbjct: 345 gacgagagccaccgaggcc 363
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>dbj|AK110619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-H12, full
           insert sequence
          Length = 1054

 Score =  145 bits (73), Expect = 2e-31
 Identities = 168/199 (84%), Gaps = 3/199 (1%)
 Strand = Plus / Plus

                                                                       
Query: 262 gtcggggaggagcgcgacgg---aggcgagggcactgaggatccacagcgaggccgagcg 318
           |||||||||||||||| |||   |||||| |||  ||| ||||||||||||||| ||| |
Sbjct: 293 gtcggggaggagcgcggcggctcaggcgacggcgatgacgatccacagcgaggctgagag 352

                                                                       
Query: 319 ccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccctgatac 378
            ||||| ||||||||||| || ||||| |||||  | || |||| |||  |||||||| |
Sbjct: 353 gcggcggcgggagaggattaatgctcacctggctacactgaggaggatactccctgatgc 412

                                                                       
Query: 379 caagcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaa 438
            |||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| ||
Sbjct: 413 taagcagatggacaaggccaccttgctagccagcgtggtgaaccaagtgaagcacctcaa 472

                              
Query: 439 gaggagagccagcgaggcc 457
           || |||||||| |||||||
Sbjct: 473 gacgagagccaccgaggcc 491
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 2e-21
 Identities = 159/193 (82%), Gaps = 9/193 (4%)
 Strand = Plus / Plus

                                                                           
Query: 193     gccccggcaggccacctcggcgcctccggctgggccgccggaggtgtcgaccacgtcctc 252
               |||||||||||||| ||||||||| ||||| | |||||||||| |||||      |||||
Sbjct: 3128390 gccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcg------tcctc 3128443

                                                                           
Query: 253     gtccacggggtcggggaggagcgcgacggaggcgagggcactgaggatccacagcgaggc 312
               |||   |||||| ||||| ||||||||||||||||| ||  ||| |||||||||||||||
Sbjct: 3128444 gtc---ggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggc 3128500

                                                                           
Query: 313     cgagcgccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccc 372
                || || ||||| || ||||||||||| ||||||||| |  | || ||||  ||||||||
Sbjct: 3128501 tgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccc 3128560

                            
Query: 373     tgataccaagcag 385
               |||||| ||||||
Sbjct: 3128561 tgatactaagcag 3128573



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                           
Query: 382     gcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagag 441
               |||||||||||||||| ||||| ||||||| |||||||||||||||| | | ||||||||
Sbjct: 3128963 gcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagag 3129022

                 
Query: 442     ga 443
               ||
Sbjct: 3129023 ga 3129024



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 301     ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
               |||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 6462944 ccacagcgaggcggagcggcggcggcgggagaggatcaacgc 6462985
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>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0041E11
          Length = 146335

 Score =  111 bits (56), Expect = 2e-21
 Identities = 159/193 (82%), Gaps = 9/193 (4%)
 Strand = Plus / Plus

                                                                         
Query: 193   gccccggcaggccacctcggcgcctccggctgggccgccggaggtgtcgaccacgtcctc 252
             |||||||||||||| ||||||||| ||||| | |||||||||| |||||      |||||
Sbjct: 72178 gccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcg------tcctc 72231

                                                                         
Query: 253   gtccacggggtcggggaggagcgcgacggaggcgagggcactgaggatccacagcgaggc 312
             |||   |||||| ||||| ||||||||||||||||| ||  ||| |||||||||||||||
Sbjct: 72232 gtc---ggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggc 72288

                                                                         
Query: 313   cgagcgccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccc 372
              || || ||||| || ||||||||||| ||||||||| |  | || ||||  ||||||||
Sbjct: 72289 tgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccc 72348

                          
Query: 373   tgataccaagcag 385
             |||||| ||||||
Sbjct: 72349 tgatactaagcag 72361



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                         
Query: 382   gcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagag 441
             |||||||||||||||| ||||| ||||||| |||||||||||||||| | | ||||||||
Sbjct: 72751 gcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagag 72810

               
Query: 442   ga 443
             ||
Sbjct: 72811 ga 72812
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>dbj|AK106292.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B04, full
           insert sequence
          Length = 1473

 Score =  111 bits (56), Expect = 2e-21
 Identities = 159/193 (82%), Gaps = 9/193 (4%)
 Strand = Plus / Plus

                                                                       
Query: 193 gccccggcaggccacctcggcgcctccggctgggccgccggaggtgtcgaccacgtcctc 252
           |||||||||||||| ||||||||| ||||| | |||||||||| |||||      |||||
Sbjct: 214 gccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcg------tcctc 267

                                                                       
Query: 253 gtccacggggtcggggaggagcgcgacggaggcgagggcactgaggatccacagcgaggc 312
           |||   |||||| ||||| ||||||||||||||||| ||  ||| |||||||||||||||
Sbjct: 268 gtc---ggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggc 324

                                                                       
Query: 313 cgagcgccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccc 372
            || || ||||| || ||||||||||| ||||||||| |  | || ||||  ||||||||
Sbjct: 325 tgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccc 384

                        
Query: 373 tgataccaagcag 385
           |||||| ||||||
Sbjct: 385 tgatactaagcag 397



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 382 gcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagag 441
           |||||||||||||||| ||||| ||||||| |||||||||||||||| | | ||||||||
Sbjct: 787 gcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagag 846

             
Query: 442 ga 443
           ||
Sbjct: 847 ga 848
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>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0433F09
          Length = 150150

 Score =  111 bits (56), Expect = 2e-21
 Identities = 159/193 (82%), Gaps = 9/193 (4%)
 Strand = Plus / Plus

                                                                         
Query: 193   gccccggcaggccacctcggcgcctccggctgggccgccggaggtgtcgaccacgtcctc 252
             |||||||||||||| ||||||||| ||||| | |||||||||| |||||      |||||
Sbjct: 96430 gccccggcaggccaactcggcgccgccggccgtgccgccggagatgtcg------tcctc 96483

                                                                         
Query: 253   gtccacggggtcggggaggagcgcgacggaggcgagggcactgaggatccacagcgaggc 312
             |||   |||||| ||||| ||||||||||||||||| ||  ||| |||||||||||||||
Sbjct: 96484 gtc---ggggtcagggagaagcgcgacggaggcgagagcgttgaagatccacagcgaggc 96540

                                                                         
Query: 313   cgagcgccggcgccgggagaggatcaacgctcatctggccgcgctcaggaagatgatccc 372
              || || ||||| || ||||||||||| ||||||||| |  | || ||||  ||||||||
Sbjct: 96541 tgaacggcggcggcgagagaggatcaatgctcatctgacaacactgaggagaatgatccc 96600

                          
Query: 373   tgataccaagcag 385
             |||||| ||||||
Sbjct: 96601 tgatactaagcag 96613



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                         
Query: 382   gcagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagag 441
             |||||||||||||||| ||||| ||||||| |||||||||||||||| | | ||||||||
Sbjct: 97003 gcagatggacaaggccaccttgttagccagagtggtggaccaagtgaaggatctgaagag 97062

               
Query: 442   ga 443
             ||
Sbjct: 97063 ga 97064
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>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0027N19, complete sequence
          Length = 141368

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                         
Query: 383   cagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagagg 442
             ||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| |||| |
Sbjct: 19685 cagatggacaaggccaccttgctagccagcgtggtgaaccaagtgaagcacctcaagacg 19744

                            
Query: 443   agagccagcgaggcc 457
             ||||||| |||||||
Sbjct: 19745 agagccaccgaggcc 19759



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                         
Query: 262   gtcggggaggagcgcgacgg---aggcgagggcactgaggatccacagcgaggccgagcg 318
             |||||||||||||||| |||   |||||| |||  ||| ||||||||||||||| ||| |
Sbjct: 17534 gtcggggaggagcgcggcggctcaggcgacggcgatgacgatccacagcgaggctgagag 17593

                                              
Query: 319   ccggcgccgggagaggatcaacgctcatctggc 351
              ||||| ||||||||||| || ||||| |||||
Sbjct: 17594 gcggcggcgggagaggattaatgctcacctggc 17626
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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06,
              complete sequence
          Length = 135117

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                          
Query: 383    cagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagagg 442
              ||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| |||| |
Sbjct: 121102 cagatggacaaggccaccttgctagccagcgtggtgaaccaagtgaagcacctcaagacg 121161

                             
Query: 443    agagccagcgaggcc 457
              ||||||| |||||||
Sbjct: 121162 agagccaccgaggcc 121176



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                          
Query: 262    gtcggggaggagcgcgacgg---aggcgagggcactgaggatccacagcgaggccgagcg 318
              |||||||||||||||| |||   |||||| |||  ||| ||||||||||||||| ||| |
Sbjct: 118951 gtcggggaggagcgcggcggctcaggcgacggcgatgacgatccacagcgaggctgagag 119010

                                               
Query: 319    ccggcgccgggagaggatcaacgctcatctggc 351
               ||||| ||||||||||| || ||||| |||||
Sbjct: 119011 gcggcggcgggagaggattaatgctcacctggc 119043
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 68/75 (90%)
 Strand = Plus / Plus

                                                                           
Query: 383     cagatggacaaggccgccttgctagccagggtggtggaccaagtgaggcacctgaagagg 442
               ||||||||||||||| ||||||||||||| |||||| ||||||||| |||||| |||| |
Sbjct: 3698755 cagatggacaaggccaccttgctagccagcgtggtgaaccaagtgaagcacctcaagacg 3698814

                              
Query: 443     agagccagcgaggcc 457
               ||||||| |||||||
Sbjct: 3698815 agagccaccgaggcc 3698829



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 78/93 (83%), Gaps = 3/93 (3%)
 Strand = Plus / Plus

                                                                           
Query: 262     gtcggggaggagcgcgacgg---aggcgagggcactgaggatccacagcgaggccgagcg 318
               |||||||||||||||| |||   |||||| |||  ||| ||||||||||||||| ||| |
Sbjct: 3696604 gtcggggaggagcgcggcggctcaggcgacggcgatgacgatccacagcgaggctgagag 3696663

                                                
Query: 319     ccggcgccgggagaggatcaacgctcatctggc 351
                ||||| ||||||||||| || ||||| |||||
Sbjct: 3696664 gcggcggcgggagaggattaatgctcacctggc 3696696
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>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0085M22, complete sequence
          Length = 145104

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 301   ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
             ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 53331 ccacagcgaggccgagcgccgccgccgcgagcggatcaacgc 53372
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>ref|NM_188475.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 804

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 301 ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
           |||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 243 ccacagcgaggcggagcggcggcggcgggagaggatcaacgc 284
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 301     ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
               ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 8429788 ccacagcgaggccgagcgccgccgccgcgagcggatcaacgc 8429829
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                         
Query: 301     ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
               ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 8427623 ccacagcgaggccgagcgccgccgccgcgagcggatcaacgc 8427664
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>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489G09
          Length = 148707

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 301   ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
             |||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 30424 ccacagcgaggcggagcggcggcggcgggagaggatcaacgc 30465
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 301   ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
             |||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 85339 ccacagcgaggcggagcggcggcggcgggagaggatcaacgc 85380
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>dbj|AK106649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F07, full
           insert sequence
          Length = 1639

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 301 ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
           ||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 723 ccacagcgaggccgagcgccgccgccgcgagcggatcaacgc 764
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>dbj|AK068593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152L23, full
            insert sequence
          Length = 2090

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                      
Query: 301  ccacagcgaggccgagcgccggcgccgggagaggatcaacgc 342
            |||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 1177 ccacagcgaggcggagcggcggcggcgggagaggatcaacgc 1218
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 301      ccacagcgaggccgagcgccggcgccgggagaggatcaacg 341
                |||||||||||||||||| ||||||||| || | |||||||
Sbjct: 14531304 ccacagcgaggccgagcggcggcgccggcagcgcatcaacg 14531264
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 301   ccacagcgaggccgagcgccggcgccgggagaggatcaacg 341
             |||||||||||||||||| ||||||||| || | |||||||
Sbjct: 29593 ccacagcgaggccgagcggcggcgccggcagcgcatcaacg 29553
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>ref|XM_482542.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1469

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 301 ccacagcgaggccgagcgccggcgccg 327
           ||||||||||||||||||||| |||||
Sbjct: 587 ccacagcgaggccgagcgccgccgccg 613
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 301      ccacagcgaggccgagcgccggcgccg 327
                ||||||||||||||||||||| |||||
Sbjct: 20969427 ccacagcgaggccgagcgccgccgccg 20969401
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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0431A03
          Length = 149500

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 301   ccacagcgaggccgagcgccggcgccg 327
             ||||||||||||||||||||| |||||
Sbjct: 35602 ccacagcgaggccgagcgccgccgccg 35576
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>dbj|AK109616.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H01, full
           insert sequence
          Length = 1469

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 301 ccacagcgaggccgagcgccggcgccg 327
           ||||||||||||||||||||| |||||
Sbjct: 587 ccacagcgaggccgagcgccgccgccg 613
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 305     agcgaggccgagcgccggcgcc 326
               ||||||||||||||||||||||
Sbjct: 1955448 agcgaggccgagcgccggcgcc 1955427
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>gb|BC018788.1| Homo sapiens hyaluronan binding protein 4, mRNA (cDNA clone MGC:825
           IMAGE:3502216), complete cds
          Length = 1541

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 207 gcgaggccgagcgccggcgcc 227
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>gb|BC032046.1| Mus musculus, clone IMAGE:4193217, mRNA
          Length = 1762

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 306  gcgaggccgagcgccggcgcc 326
            |||||||||||||||||||||
Sbjct: 1500 gcgaggccgagcgccggcgcc 1520
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>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 304    cagcgaggccgagcgccggcgccgg 328
              ||||||||||||| |||||||||||
Sbjct: 149684 cagcgaggccgagggccggcgccgg 149708
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 304    cagcgaggccgagcgccggcgccgg 328
              ||||||||||||| |||||||||||
Sbjct: 305468 cagcgaggccgagggccggcgccgg 305492
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>emb|AJ271405.1|SRO271405 Streptomyces rochei sttO gene, sttN gene, sttM gene, sttL gene, sttK
             gene, sttJ gene, sttI gene, sttH gene, sttG gene, sttF
             gene and sttE gene, strain F20
          Length = 13339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 237   tgtcgaccacgtcctcgtccacggggtcg 265
             ||||||||||| |||||||||| ||||||
Sbjct: 10467 tgtcgaccacggcctcgtccaccgggtcg 10439
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>emb|CR613789.1| full-length cDNA clone CS0DD008YH07 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1899

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 253 gcgaggccgagcgccggcgcc 273
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>emb|CR613476.1| full-length cDNA clone CS0DI021YD21 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1691

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 138 gcgaggccgagcgccggcgcc 158
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>emb|CR596448.1| full-length cDNA clone CS0DI012YK14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1808

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 261 gcgaggccgagcgccggcgcc 281
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>gb|AF241831.1|AF241831 Homo sapiens intracellular hyaluronan-binding protein mRNA,
           complete cds
          Length = 1799

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 203 gcgaggccgagcgccggcgcc 223
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>ref|NM_014282.1| Homo sapiens hyaluronan binding protein 4 (HABP4), mRNA
          Length = 1799

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 306 gcgaggccgagcgccggcgcc 326
           |||||||||||||||||||||
Sbjct: 203 gcgaggccgagcgccggcgcc 223
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>emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chromosome 9q22.2-31.1
             Contains the 3' end of the CDC14B gene for the CDC14 cell
             division cycle 14 homolog B (S. cerevisiae) the HABP4 gene
             for hyaluronan binding protein 4, the gene for a novel
             protein similar to a zinc finger protein, TINP1
             pseudogene, a novel gene and three CpG islands, complete
             sequence
          Length = 139118

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   gcgaggccgagcgccggcgcc 326
             |||||||||||||||||||||
Sbjct: 76665 gcgaggccgagcgccggcgcc 76645
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>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence
          Length = 202649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    ccttgctagccagggtggtg 418
              ||||||||||||||||||||
Sbjct: 176590 ccttgctagccagggtggtg 176571
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>ref|XM_417927.1| PREDICTED: Gallus gallus similar to FLJ00141 protein (LOC419790),
           mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 gaggccgagcgccggcgccgggag 331
           |||| |||||||||||||||||||
Sbjct: 858 gaggacgagcgccggcgccgggag 881
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>ref|XM_323504.1| Neurospora crassa OR74A hypothetical protein ( (AL513445) related
           to low-temperature viability protein LTV1 [Neurospora
           crassa OR74A] ) (NCU04165.1) partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 cggaggcgagggcactgagg 298
           ||||||||||||||||||||
Sbjct: 169 cggaggcgagggcactgagg 150
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>ref|XM_955630.1| Neurospora crassa OR74A hypothetical protein ( (AL513445) related
           to low-temperature viability protein LTV1 [Neurospora
           crassa OR74A] ) (NCU04165.1) partial mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 cggaggcgagggcactgagg 298
           ||||||||||||||||||||
Sbjct: 169 cggaggcgagggcactgagg 150
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>gb|AF084950.1| Bacillus amyloliquefaciens signal peptidase type I (sipV) gene,
           complete cds
          Length = 1243

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 aacaaggaaatgagctgatg 145
           ||||||||||||||||||||
Sbjct: 328 aacaaggaaatgagctgatg 347
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>gb|AC147369.3| Mus musculus BAC clone RP24-392B5 from chromosome 19, complete sequence
          Length = 184037

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     agcctcctcctatccccgtcttct 37
              |||||||||||||||| |||||||
Sbjct: 140697 agcctcctcctatcccagtcttct 140720
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>gb|AC008167.5| Homo sapiens BAC clone RP11-172O13 from 7, complete sequence
          Length = 142363

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggctggacggcagcggcatg 114
             ||||||||||||||||||||
Sbjct: 52105 ggctggacggcagcggcatg 52086
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>gb|AC126940.4| Mus musculus BAC clone RP23-77E4 from chromosome 19, complete sequence
          Length = 256476

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     agcctcctcctatccccgtcttct 37
              |||||||||||||||| |||||||
Sbjct: 195687 agcctcctcctatcccagtcttct 195664
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>ref|XM_548054.2| PREDICTED: Canis familiaris similar to C1q-related factor precursor
           (Complement component 1 Q subcomponent-like 1)
           (LOC490931), mRNA
          Length = 1435

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 ggccgagcgccggcgccggg 329
           ||||||||||||||||||||
Sbjct: 767 ggccgagcgccggcgccggg 748
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>emb|AL031678.2|HS816K17 Human DNA sequence from clone RP4-816K17 on chromosome 20p12.2-13
             Contains the TGM3 gene for  transglutaminase 3 (E
             polypeptide, protein-glutamine-gamma-glutamyltransferase)
             and the 5' end of the TGM6 gene for transglutaminase 6,
             complete sequence
          Length = 115857

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    agctgtaagatgcttggctg 99
             ||||||||||||||||||||
Sbjct: 40915 agctgtaagatgcttggctg 40934
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>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ggccgagcgccggcgccggg 329
              ||||||||||||||||||||
Sbjct: 103783 ggccgagcgccggcgccggg 103764
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>emb|AL513445.1|NCB7A16 Neurospora crassa DNA linkage group V BAC clone B7A16
          Length = 74014

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   cggaggcgagggcactgagg 298
             ||||||||||||||||||||
Sbjct: 49410 cggaggcgagggcactgagg 49391
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>emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin biosynthetic cluster
          Length = 17083

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  tcgaccacgtcctcgtccac 258
            ||||||||||||||||||||
Sbjct: 4346 tcgaccacgtcctcgtccac 4365
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>gb|AC160760.4| Mus musculus BAC clone RP23-449G13 from chromosome 17, complete
            sequence
          Length = 174449

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  ccttgctagccagggtggtg 418
            ||||||||||||||||||||
Sbjct: 5016 ccttgctagccagggtggtg 4997
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>emb|CR391517.1| Gallus gallus finished cDNA, clone ChEST296p18
          Length = 1539

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 gaggccgagcgccggcgccgggag 331
           |||| |||||||||||||||||||
Sbjct: 858 gaggacgagcgccggcgccgggag 881
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>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence
          Length = 54288

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 308   gaggccgagcgccggcgccgggag 331
             ||||||||||||||||||| ||||
Sbjct: 23489 gaggccgagcgccggcgcctggag 23512


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,700,622
Number of Sequences: 3902068
Number of extensions: 3700622
Number of successful extensions: 75770
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75302
Number of HSP's gapped (non-prelim): 459
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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