Clone Information

BLAST Search Result

Clone Name	bart18a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AROC_ENTFA (Q834S2) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	35	0.11
2	AROC_BACHD (Q9KCB7) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	34	0.25
3	AROC_STAES (Q8CP67) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	0.95
4	AROC_STAEQ (Q5HP77) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	0.95
5	AROC2_BACCR (Q81C42) Chorismate synthase 2 (EC 4.2.3.5) (5-enolp...	32	0.95
6	CRAC_DICDI (P35401) Protein CRAC	32	1.2
7	AROC_STAAN (P63614) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.2
8	AROC_STAAM (P63613) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.2
9	AROC_STAAC (Q5HFV7) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.2
10	AROC_STAAW (Q8NWN3) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.6
11	AROC_STAAU (Q59803) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.6
12	AROC_STAAS (Q6G996) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.6
13	AROC_STAAR (Q6GGU3) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	32	1.6
14	PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, m...	32	1.6
15	AROC2_BACHK (Q6HHF5) Chorismate synthase 2 (EC 4.2.3.5) (5-enolp...	32	1.6
16	AROC2_BACCZ (Q63A04) Chorismate synthase 2 (EC 4.2.3.5) (5-enolp...	32	1.6
17	AROC2_BACC1 (Q736A4) Chorismate synthase 2 (EC 4.2.3.5) (5-enolp...	32	1.6
18	AROC2_BACAN (Q81P61) Chorismate synthase 2 (EC 4.2.3.5) (5-enolp...	32	1.6
19	DSG1B_MOUSE (Q7TSF1) Desmoglein-1 beta precursor (Dsg1-beta) (De...	27	2.7
20	IDI2_VIBPA (Q87JH5) Isopentenyl-diphosphate delta-isomerase (EC ...	31	2.8
21	AROC1_BACCZ (Q63DL6) Chorismate synthase 1 (EC 4.2.3.5) (5-enolp...	31	2.8
22	AROC_BACSU (P31104) Chorismate synthase (EC 4.2.3.5) (5-enolpyru...	30	3.6
23	WSC3_YEAST (Q12215) Cell wall integrity and stress response comp...	30	6.1
24	YH19_YEAST (P38900) Hypothetical 70.1 kDa protein in PUR5 3'region	29	8.0
25	YMN3_YEAST (Q03099) Hypothetical ATP-dependent helicase YML133C ...	29	8.0
26	YRF16_YEAST (P53819) Y'helicase protein 1 copy 6 (EC 3.6.1.-)	29	8.0
27	YRF13_YEAST (P53345) Y'helicase protein 1 copies 3/7 (EC 3.6.1.-)	29	8.0
28	YRF11_YEAST (P24088) Y'helicase protein 1 copies 1/5/8 (EC 3.6.1.-)	29	8.0
29	PURL_PYRAE (Q8ZZJ7) Phosphoribosylformylglycinamidine synthase I...	29	8.0
30	SPG7_DICDI (P22698) Spore germination protein 270-11	29	8.0
31	YRF14_YEAST (O13559) Y'helicase protein 1 copy 4 (EC 3.6.1.-)	29	8.0
32	SYFB_SYMTH (Q67QF2) Phenylalanyl-tRNA synthetase beta chain (EC ...	29	8.0
33	YRF12_YEAST (P40105) Y'helicase protein 1 copy 2 (EC 3.6.1.-)	29	8.0
34	CS021_HUMAN (Q8IVT2) Protein C19orf21	29	8.0

>AROC_ENTFA (Q834S2) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 330 GIDIDDMLMWDQLRTSYIRTQ--LSTHVGVVGGGMPVIARSTTVSNRD-YTPSSTASVGT 500
           G  + D ++WD+  T Y RT   L    G +  GMP+I R         Y P  + ++ T
Sbjct: 269 GSQVMDEIVWDE-STGYTRTSNNLGGFEGGMTNGMPIIVRGVMKPIPTLYKPLQSVNIDT 327

Query: 501 NSGTSXTIEKSDQTA 545
                 ++E+SD TA
Sbjct: 328 KEPYKASVERSDSTA 342

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>AROC_BACHD (Q9KCB7) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 390

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQ-LSTHVGVVGGGMPVIARSTTVSNRD-YTPSSTA 488
           A+   G ++ D + WD+ R  Y ++  L    G +  GMP++ R         Y P  + 
Sbjct: 266 AASKPGSEVHDEIAWDEERGYYRKSNNLGGFEGGMTNGMPIVVRGVMKPIPTLYKPLQSV 325

Query: 489 SVGTNSGTSXTIEKSDQTA 545
            + T    + +IE+SD  A
Sbjct: 326 DIATKEPFAASIERSDSCA 344

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>AROC_STAES (Q8CP67) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRT--QLSTHVGVVGGGMPVIA 440
           V +N   G       +A+E  G +I D + ++Q  + Y R    L    G +  GMP+I 
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEIHYNQ-DSGYFRATNHLGGFEGGMSNGMPIIV 306

Query: 441 RSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
                     Y P ++  + T      TIE+SD  A
Sbjct: 307 NGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAEQ (Q5HP77) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRT--QLSTHVGVVGGGMPVIA 440
           V +N   G       +A+E  G +I D + ++Q  + Y R    L    G +  GMP+I 
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEIHYNQ-DSGYFRATNHLGGFEGGMSNGMPIIV 306

Query: 441 RSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
                     Y P ++  + T      TIE+SD  A
Sbjct: 307 NGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC2_BACCR (Q81C42) Chorismate synthase 2 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
          Length = 390

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G  + D ++WD+ +    RT  +   G+ GG   GMP+I R         Y P +
Sbjct: 266 AARQPGSKVHDEILWDEEKGYTRRTNNAG--GLEGGMTTGMPIIVRGVMKPIPTLYKPLA 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T      +IE+SD  A
Sbjct: 324 SVDIDTKEAFQASIERSDSCA 344

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>CRAC_DICDI (P35401) Protein CRAC|
          Length = 697

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 354 MWDQLRTSYIRTQLSTHVGVVGGGMPVIARSTTVSNRDYTPSSTASVGTNSGTSXTIEKS 533
           +WD  + S++     + VG  GGG    ++ST     +   SST+S+ + S +S +  K 
Sbjct: 573 IWDPTKQSFLNIPFKSRVGATGGGSVPSSQST-----NNLQSSTSSMSSLSSSSTSTTKR 627

Query: 534 DQTAT 548
               T
Sbjct: 628 SHPTT 632

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>AROC_STAAN (P63614) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNS-EIGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAM (P63613) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNS-EIGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAC (Q5HFV7) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNS-EIGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAW (Q8NWN3) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNT-ELGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAU (Q59803) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNT-ELGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAS (Q6G996) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNT-ELGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>AROC_STAAR (Q6GGU3) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 388

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 267 VPMNRPHGPCSSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGM----PV 434
           V +N   G       +A+E  G +I D ++++     Y R   S H+G + GGM    P+
Sbjct: 248 VSINAFKGVSFGEGFKAAEKPGSEIQDEILYNT-ELGYYRG--SNHLGGLEGGMSNGMPI 304

Query: 435 IARSTTVSNRD-YTPSSTASVGTNSGTSXTIEKSDQTA 545
           I           Y P ++  + T      TIE+SD  A
Sbjct: 305 IVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCA 342

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>PIF1_YEAST (P07271) DNA repair and recombination protein PIF1, mitochondrial|
           precursor (EC 3.6.1.-) (ATP-dependent helicase PIF1)
          Length = 857

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/50 (36%), Positives = 30/50 (60%)
 Frame = +2

Query: 164 TQTFHGCANKLPEAHPRRRYLLRTQGDTVQRHSLGPDEPPARSVLINIVE 313
           TQ+ +G A  L + H R+R+ L+ + ++ Q HSL  DEP  +    +I+E
Sbjct: 809 TQSNNGIAAML-QRHSRKRFQLKKESNSNQVHSLVSDEPRGQDTEDHILE 857

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>AROC2_BACHK (Q6HHF5) Chorismate synthase 2 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
          Length = 390

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G  + D ++WD+    Y R + +   G+ GG   GMP++ R         Y P +
Sbjct: 266 AARQPGSKVHDEILWDE-EQGYTR-KTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLA 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T      +IE+SD  A
Sbjct: 324 SVDIDTKEAFQASIERSDSCA 344

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>AROC2_BACCZ (Q63A04) Chorismate synthase 2 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
          Length = 390

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G  + D ++WD+    Y R + +   G+ GG   GMP++ R         Y P +
Sbjct: 266 AARQPGSKVHDEILWDE-EQGYTR-KTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLA 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T      +IE+SD  A
Sbjct: 324 SVDIDTKEAFQASIERSDSCA 344

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>AROC2_BACC1 (Q736A4) Chorismate synthase 2 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
          Length = 390

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G  + D ++WD+    Y R + +   G+ GG   GMP++ R         Y P +
Sbjct: 266 AARQPGSKVHDEILWDE-EQGYTR-KTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLA 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T      +IE+SD  A
Sbjct: 324 SVDIDTKEAFQASIERSDSCA 344

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>AROC2_BACAN (Q81P61) Chorismate synthase 2 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
          Length = 390

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G  + D ++WD+    Y R + +   G+ GG   GMP++ R         Y P +
Sbjct: 266 AARQPGSKVHDEILWDE-EQGYTR-KTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLA 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T      +IE+SD  A
Sbjct: 324 SVDIDTKEAFQASIERSDSCA 344

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>DSG1B_MOUSE (Q7TSF1) Desmoglein-1 beta precursor (Dsg1-beta) (Desmoglein-5)|
          Length = 1060

 Score = 26.9 bits (58), Expect(2) = 2.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 222 TCSGHKVIPSNGTAWVPMNRPHGPCSSTSSRASED 326
           TC+G  VI  +GT WVP +   G  SS+ S  + D
Sbjct: 474 TCTGTIVIELSGTGWVPGS--DGGGSSSGSGGNRD 506



 Score = 22.3 bits (46), Expect(2) = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 313 GHQRIWASISMTCLCGTSSAPATSGRSSPL 402
           G QR+  S  +T   G S    T GR +PL
Sbjct: 519 GPQRVTGSGGVTSSGGGSGVNNTPGRQNPL 548

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>IDI2_VIBPA (Q87JH5) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 339

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
 Frame = -3

Query: 236 VSGAGSVFWDVLQGACWHN------HETF-EFMVISSTCICTQEAGTRQDDQKQQRVQSG 78
           V+GAG   W  ++G C  N       E F ++ + ++TC+    A  R    K   + SG
Sbjct: 216 VAGAGGTSWSAVEGYCQDNPHMQRAAELFRDWGIPTATCL----AQIRAQHPKLPLIASG 271

Query: 77  GLH-GHELINCVHV 39
           G+H G E    +H+
Sbjct: 272 GIHNGLEAAKAIHL 285

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>AROC1_BACCZ (Q63DL6) Chorismate synthase 1 (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase 1)
          Length = 390

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
 Frame = +3

Query: 315 ASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGG---GMPVIARSTTVSNRD-YTPSS 482
           A+   G ++ D ++WD+      RT  +   G+ GG   GMP++ R         Y P  
Sbjct: 266 AAHRPGSEVHDEILWDEEHGYTRRTNNAG--GLEGGMTTGMPIVVRGVMKPIPTLYKPLQ 323

Query: 483 TASVGTNSGTSXTIEKSDQTA 545
           +  + T    + +IE+SD  A
Sbjct: 324 SVDIDTKEPFTASIERSDSCA 344

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>AROC_BACSU (P31104) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
           (Vegetative protein 216) (VEG216)
          Length = 369

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 330 GIDIDDMLMWDQLRTSYIRT--QLSTHVGVVGGGMPVIARSTTVSNRD-YTPSSTASVGT 500
           G ++ D ++WD+ +  Y R   +L    G +  GMP++ R         Y P  +  + T
Sbjct: 271 GSEVHDEIIWDEEK-GYTRATNRLGGLEGGMTTGMPIVVRGVMKPIPTLYKPLKSVDIET 329

Query: 501 NSGTSXTIEKSDQTA 545
               S +IE+SD  A
Sbjct: 330 KEPFSASIERSDSCA 344

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>WSC3_YEAST (Q12215) Cell wall integrity and stress response component 3|
           precursor
          Length = 556

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/85 (30%), Positives = 33/85 (38%)
 Frame = +3

Query: 297 SSTSSRASEDMGIDIDDMLMWDQLRTSYIRTQLSTHVGVVGGGMPVIARSTTVSNRDYTP 476
           SST+ R S DM              +  I T +ST              STT S    T 
Sbjct: 166 SSTTRRTSTDMK------------SSEMIATTVST-TSTTSSSTSSTTSSTTSSTTSSTT 212

Query: 477 SSTASVGTNSGTSXTIEKSDQTATN 551
           SST S  T+S TS T   +  + T+
Sbjct: 213 SSTTSSSTSSTTSSTTSSTTSSTTS 237

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>YH19_YEAST (P38900) Hypothetical 70.1 kDa protein in PUR5 3'region|
          Length = 624

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444 STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
           +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 180 ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 215

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>YMN3_YEAST (Q03099) Hypothetical ATP-dependent helicase YML133C (EC 3.6.1.-)|
          Length = 1374

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 930  ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 965

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>YRF16_YEAST (P53819) Y'helicase protein 1 copy 6 (EC 3.6.1.-)|
          Length = 1859

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 1416 ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 1451

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>YRF13_YEAST (P53345) Y'helicase protein 1 copies 3/7 (EC 3.6.1.-)|
          Length = 1859

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 1416 ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 1451

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>YRF11_YEAST (P24088) Y'helicase protein 1 copies 1/5/8 (EC 3.6.1.-)|
          Length = 1796

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 1352 ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 1387

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>PURL_PYRAE (Q8ZZJ7) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 697

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 248 VQRHSLGPDEPPARSVLINIVEGIRGYGHR 337
           V  H   P  P AR + +N++ GI  YG+R
Sbjct: 115 VNLHFGPPSHPHARWIAVNVIRGISDYGNR 144

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>SPG7_DICDI (P22698) Spore germination protein 270-11|
          Length = 532

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 363 QLRTSYIRTQLSTHVGVVGGGMPVIARSTTVSNRDYTPSSTASVGTNSGTSXTIEKSDQT 542
           +  +SY     +T V   GG +P+   S+T ++   TPS+  S  T S ++ T   S  T
Sbjct: 89  EFTSSYDEGLSATIVVSSGGQIPITTTSSTTTDGSSTPSTPTS--TTSASTTTSGGSATT 146

Query: 543 ATNE 554
            T E
Sbjct: 147 TTGE 150

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>YRF14_YEAST (O13559) Y'helicase protein 1 copy 4 (EC 3.6.1.-)|
          Length = 1382

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 938  ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 973

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>SYFB_SYMTH (Q67QF2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 892

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 396 RAASGCSWCGAGPT*ACHRYRCPYPLMPSTMLMSTDRAGGSSGPRLCRWTVSPCVRS 226
           RAA   +    G   A H   CP P +P  +L+ T+RA   +G +L    ++  +RS
Sbjct: 381 RAAQLMAELAGGTVVAGHVDVCPRPAVPPVILLRTERANALTGLKLTPERMAEHLRS 437

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>YRF12_YEAST (P40105) Y'helicase protein 1 copy 2 (EC 3.6.1.-)|
          Length = 1681

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 444  STTVSNRDYTPSSTASVGTNSGTSXTIEKSDQTATN 551
            +TT  + D   S+T +  TNS T+ T   S  ++TN
Sbjct: 1238 ATTTESTDSNTSATTTASTNSSTNATTTASTNSSTN 1273

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>CS021_HUMAN (Q8IVT2) Protein C19orf21|
          Length = 679

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
 Frame = +2

Query: 194 LPEAHPRRRYLLRTQGDTVQRHSL----------GPDEPPARSVLINIVEGIRGYGHRYR 343
           +P+AH     +L   GDT   + L          G DEP          +G++  G  Y 
Sbjct: 12  IPQAHRGTGLVL--DGDTSYTYHLVCMGPEASGWGQDEPQTWPTDHRAQQGVQRQGVSYS 69

Query: 344 *HAYVG-PAPHQLHPD 388
            HAY G P+P  LH +
Sbjct: 70  VHAYTGQPSPRGLHSE 85


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,958,909
Number of Sequences: 219361
Number of extensions: 1774769
Number of successful extensions: 5073
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 4840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5068
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result