ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart18a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR956433.5| Pig DNA sequence from clone CH242-96L23 on chrom... 42 1.9
2gb|AY510455.1| Aspergillus flavus isolate AF36 aflatoxin biosynt... 40 7.7
3gb|BT015226.1| Drosophila melanogaster RE32027 full insert cDNA 40 7.7
4gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI ... 40 7.7
5emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 40 7.7
6emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on ch... 40 7.7
7gb|AE012386.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.7
8dbj|AB196490.1| Aspergillus oryzae DNA, aflatoxin biosynthesis g... 40 7.7
9dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 40 7.7
10ref|NM_132423.1| Drosophila melanogaster Rabphilin CG11556-RA (R... 40 7.7
11gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.7
12gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosom... 40 7.7
13gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7... 40 7.7
14gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 ... 40 7.7
15emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 i... 40 7.7

>emb|CR956433.5| Pig DNA sequence from clone CH242-96L23 on chromosome 7, complete
             sequence
          Length = 81700

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 95    gctgcttctgatcatcttgtctagttcctgcctcctg 131
             |||| |||| ||||||||||||  |||||||||||||
Sbjct: 32565 gctgattctcatcatcttgtctctttcctgcctcctg 32529



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>gb|AY510455.1| Aspergillus flavus isolate AF36 aflatoxin biosynthesis gene cluster,
             complete sequence
          Length = 78264

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tgctccggacacaaggtgat 244
             ||||||||||||||||||||
Sbjct: 61064 tgctccggacacaaggtgat 61045



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>gb|BT015226.1| Drosophila melanogaster RE32027 full insert cDNA
          Length = 3410

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 405  gtcggcgttgtcggtggaggcatg 428
            ||||||||||||||||| ||||||
Sbjct: 1401 gtcggcgttgtcggtggtggcatg 1424



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>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila
             melanogaster library) complete sequence
          Length = 166613

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 405   gtcggcgttgtcggtggaggcatg 428
             ||||||||||||||||| ||||||
Sbjct: 16610 gtcggcgttgtcggtggtggcatg 16633



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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    gtgcaaatgcaggtgctgga 152
              ||||||||||||||||||||
Sbjct: 351547 gtgcaaatgcaggtgctgga 351528



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>emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on chromosome 6p21.3-22.2.
             Contains the gene for KIAA0426 (C2H2 type zinc finger
             protein), the gene for a novel C2H2 type zinc finger
             protein, a COX11 (COX11 (yeast) homolog, cytochrome c
             oxidase assembly protein) pseudogene, the olfactory
             receptor 2E1 pseudogene OR2E1P, the 3' end of a glutathion
             peroxidase pseudogene, ESTs, STSs, GSS and three CpG
             islands, complete sequence
          Length = 128779

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   ctgcctcctgagtgcaaatg 141
             ||||||||||||||||||||
Sbjct: 93717 ctgcctcctgagtgcaaatg 93698



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>gb|AE012386.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 294
           of 460 of the complete genome
          Length = 10029

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 141 gcaggtgctggagatcacca 160
           ||||||||||||||||||||
Sbjct: 552 gcaggtgctggagatcacca 533



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>dbj|AB196490.1| Aspergillus oryzae DNA, aflatoxin biosynthesis gene cluster, complete
             sequence, strain: RIB40
          Length = 89641

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tgctccggacacaaggtgat 244
             ||||||||||||||||||||
Sbjct: 71154 tgctccggacacaaggtgat 71135



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>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026
          Length = 2324132

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tgctccggacacaaggtgat 244
             ||||||||||||||||||||
Sbjct: 77649 tgctccggacacaaggtgat 77630



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>ref|NM_132423.1| Drosophila melanogaster Rabphilin CG11556-RA (Rph), mRNA
          Length = 2833

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 405 gtcggcgttgtcggtggaggcatg 428
           ||||||||||||||||| ||||||
Sbjct: 886 gtcggcgttgtcggtggtggcatg 909



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 141     gcaggtgctggagatcacca 160
               ||||||||||||||||||||
Sbjct: 1672800 gcaggtgctggagatcacca 1672819



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>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence
          Length = 186985

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ctgcttctgatcatcttgtc 115
             ||||||||||||||||||||
Sbjct: 91321 ctgcttctgatcatcttgtc 91340



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>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence
          Length = 187543

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    ctgcctcctgagtgcaaatg 141
              ||||||||||||||||||||
Sbjct: 138748 ctgcctcctgagtgcaaatg 138729



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>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete
              sequence
          Length = 285729

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 405    gtcggcgttgtcggtggaggcatg 428
              ||||||||||||||||| ||||||
Sbjct: 264832 gtcggcgttgtcggtggtggcatg 264809



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>emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 in linkage group 5,
             complete sequence
          Length = 124886

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ttgtctagttcctgcctcct 130
             ||||||||||||||||||||
Sbjct: 40808 ttgtctagttcctgcctcct 40789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,890,955
Number of Sequences: 3902068
Number of extensions: 3890955
Number of successful extensions: 98380
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98301
Number of HSP's gapped (non-prelim): 79
length of query: 565
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 542
effective length of database: 17,143,297,704
effective search space: 9291667355568
effective search space used: 9291667355568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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