Clone Name | bart18a07 |
---|---|
Clone Library Name | barley_pub |
>emb|CR956433.5| Pig DNA sequence from clone CH242-96L23 on chromosome 7, complete sequence Length = 81700 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Minus Query: 95 gctgcttctgatcatcttgtctagttcctgcctcctg 131 |||| |||| |||||||||||| ||||||||||||| Sbjct: 32565 gctgattctcatcatcttgtctctttcctgcctcctg 32529
>gb|AY510455.1| Aspergillus flavus isolate AF36 aflatoxin biosynthesis gene cluster, complete sequence Length = 78264 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tgctccggacacaaggtgat 244 |||||||||||||||||||| Sbjct: 61064 tgctccggacacaaggtgat 61045
>gb|BT015226.1| Drosophila melanogaster RE32027 full insert cDNA Length = 3410 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gtcggcgttgtcggtggaggcatg 428 ||||||||||||||||| |||||| Sbjct: 1401 gtcggcgttgtcggtggtggcatg 1424
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gtcggcgttgtcggtggaggcatg 428 ||||||||||||||||| |||||| Sbjct: 16610 gtcggcgttgtcggtggtggcatg 16633
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gtgcaaatgcaggtgctgga 152 |||||||||||||||||||| Sbjct: 351547 gtgcaaatgcaggtgctgga 351528
>emb|Z98745.1|HS29K1 Human DNA sequence from clone RP1-29K1 on chromosome 6p21.3-22.2. Contains the gene for KIAA0426 (C2H2 type zinc finger protein), the gene for a novel C2H2 type zinc finger protein, a COX11 (COX11 (yeast) homolog, cytochrome c oxidase assembly protein) pseudogene, the olfactory receptor 2E1 pseudogene OR2E1P, the 3' end of a glutathion peroxidase pseudogene, ESTs, STSs, GSS and three CpG islands, complete sequence Length = 128779 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctgcctcctgagtgcaaatg 141 |||||||||||||||||||| Sbjct: 93717 ctgcctcctgagtgcaaatg 93698
>gb|AE012386.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 294 of 460 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gcaggtgctggagatcacca 160 |||||||||||||||||||| Sbjct: 552 gcaggtgctggagatcacca 533
>dbj|AB196490.1| Aspergillus oryzae DNA, aflatoxin biosynthesis gene cluster, complete sequence, strain: RIB40 Length = 89641 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tgctccggacacaaggtgat 244 |||||||||||||||||||| Sbjct: 71154 tgctccggacacaaggtgat 71135
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tgctccggacacaaggtgat 244 |||||||||||||||||||| Sbjct: 77649 tgctccggacacaaggtgat 77630
>ref|NM_132423.1| Drosophila melanogaster Rabphilin CG11556-RA (Rph), mRNA Length = 2833 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gtcggcgttgtcggtggaggcatg 428 ||||||||||||||||| |||||| Sbjct: 886 gtcggcgttgtcggtggtggcatg 909
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcaggtgctggagatcacca 160 |||||||||||||||||||| Sbjct: 1672800 gcaggtgctggagatcacca 1672819
>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence Length = 186985 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ctgcttctgatcatcttgtc 115 |||||||||||||||||||| Sbjct: 91321 ctgcttctgatcatcttgtc 91340
>gb|AC005678.1|AC005678 Homo sapiens PAC clone RP11-569I24 from 7, complete sequence Length = 187543 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctgcctcctgagtgcaaatg 141 |||||||||||||||||||| Sbjct: 138748 ctgcctcctgagtgcaaatg 138729
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 gtcggcgttgtcggtggaggcatg 428 ||||||||||||||||| |||||| Sbjct: 264832 gtcggcgttgtcggtggtggcatg 264809
>emb|BX004856.5| Zebrafish DNA sequence from clone CH211-166O17 in linkage group 5, complete sequence Length = 124886 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ttgtctagttcctgcctcct 130 |||||||||||||||||||| Sbjct: 40808 ttgtctagttcctgcctcct 40789 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,890,955 Number of Sequences: 3902068 Number of extensions: 3890955 Number of successful extensions: 98380 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98301 Number of HSP's gapped (non-prelim): 79 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)