ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart17h06 |
|---|---|
| Clone Library Name | barley_pub |
>CWC22_DEBHA (Q6BU84) Pre-mRNA-splicing factor CWC22| Length = 637 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -3 Query: 229 SRSAARHRRGTRSRLIASDRRESGARDTPTGRA 131 SRS +R R G+R R ++ DR +S +R T R+ Sbjct: 583 SRSRSRSRTGSRGRTMSRDRSKSFSRSRSTSRS 615
>ECR_AEDAE (P49880) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 675 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = -3 Query: 280 QLRRKRRRIWSCLGATPSRSAARHRRGTRSRLIASDRRESGARDTPTGRASS 125 +L R IW PS A H GT+S +S S + + G +SS Sbjct: 559 KLPRFLEEIWDVQDIPPSMQAQMHSHGTQSSSSSSSSSSSSSNGSSNGNSSS 610
>TIG_XANOR (Q5H435) Trigger factor (TF)| Length = 430 Score = 28.9 bits (63), Expect = 3.5 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Frame = -2 Query: 260 KNLVLPRRYPEPICGKAQAGHAVALDCF---GPERIRRERHTDGQSFLG 123 +NL L RR P+ AQAG VAL+ + G ER+ + G S LG Sbjct: 138 ENLRLQRRIWNPVERGAQAGDLVALETWSQAGDERLPADGVETGSSVLG 186
>HSP1_ISOMA (P42136) Sperm protamine P1| Length = 66 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = -3 Query: 229 SRSAARHRRGTRSRLIASDRRE---SGARDTPTGRASSG 122 SRS R RRG RSR+ D R+ S R GRA SG Sbjct: 10 SRSRFRRRRGRRSRVRGRDARQGRSSRRRRRGKGRAHSG 48
>Y2484_GEOKA (Q5KX17) UPF0085 protein GK2484| Length = 266 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +3 Query: 75 RRNQIAQIPIRPPTSNPEEALPV------GVSLAPDSLRSEAIKRDRVPRLCL 215 +R ++A +PI P PE+ V G+ ++PD L S I+R+R+ L L Sbjct: 165 KRLKVANVPIVPEVEPPEQLFRVGPGKCFGLKISPDKLLS--IRRERLKSLGL 215
>HEM3_BURPS (Q63W73) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 329 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 129 EALPVGVSLAPDSLRSEAIKRDRVPRL 209 +ALP G + SLR EA+ R R PRL Sbjct: 125 DALPAGAVVGTSSLRREAMLRARHPRL 151
>HEM3_BURMA (Q62LC0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 329 Score = 28.5 bits (62), Expect = 4.6 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 129 EALPVGVSLAPDSLRSEAIKRDRVPRL 209 +ALP G + SLR EA+ R R PRL Sbjct: 125 DALPAGAVVGTSSLRREAMLRARHPRL 151
>Y2715_BACLD (Q65H78) UPF0085 protein BLi02715/BL03679| Length = 270 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Frame = +3 Query: 75 RRNQIAQIPIRPPTSNPEE------ALPVGVSLAPDSLRSEAIKRDRVPRLCL 215 +R ++A +PI P PEE A +G+ ++PD L I+++R+ L L Sbjct: 167 KRLKVANVPIVPEVDPPEELFTVDPAKCIGLKISPDKLNH--IRKERLKSLGL 217
>YFJ2_YEAST (P43602) Hypothetical 79.7 kDa protein in FAB1-PES4 intergenic| region Length = 733 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 86 NRANSNPASNKQSRGSSARRCVSRAGF 166 ++ ++NP+SN R + RR S AGF Sbjct: 696 SKTSNNPSSNSMKRSPTRRRATSLAGF 722
>FREA_HUMAN (O43638) Forkhead-related transcription factor 10 (FREAC-10)| (Forkhead-like 18 protein) Length = 330 Score = 28.1 bits (61), Expect = 6.0 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 9/67 (13%) Frame = -3 Query: 271 RKRRRIWSCLGATPSRSAARHRRGTRSRLIASDRRESGARDTPTGRASS---------GL 119 R+RRR GA +R A+ RRG + + ++ G + TGR S GL Sbjct: 109 RRRRRFTRQTGAEGTRGPAKARRGP----LRATSQDPGVPNATTGRQCSFPPELPDPKGL 164 Query: 118 LVGGRIG 98 GG +G Sbjct: 165 SFGGLVG 171
>RNF39_PANTR (Q7YR31) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 97 FQSGLQQAIPRKLCPSVCLSRRILSGPK---QSSATACPACALP 219 F+ + A C + CL+RR + P ++S TACP C LP Sbjct: 95 FEDPVLLACEHSFCRA-CLARRWGTPPATGTEASPTACPCCGLP 137
>RNF39_MACMU (Q5TM52) RING finger protein 39| Length = 420 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 97 FQSGLQQAIPRKLCPSVCLSRRILSGPK---QSSATACPACALP 219 F+ + A C + CL+RR + P ++S TACP C LP Sbjct: 95 FEDPVLLACEHSFCRA-CLARRWGTPPATDTEASPTACPCCGLP 137
>RNF39_HUMAN (Q9H2S5) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 97 FQSGLQQAIPRKLCPSVCLSRRILSGPK---QSSATACPACALP 219 F+ + A C + CL+RR + P ++S TACP C LP Sbjct: 95 FEDPVLLACEHSFCRA-CLARRWGTPPATGTEASPTACPCCGLP 137
>YQFL_BACSU (P54470) UPF0085 protein yqfL| Length = 270 Score = 27.7 bits (60), Expect = 7.9 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = +3 Query: 75 RRNQIAQIPIRPPTSNPEEALPV------GVSLAPDSLRSEAIKRDRVPRLCL 215 +R ++A +PI P PEE V G+ ++PD L I+++R+ L L Sbjct: 167 KRLKVANVPIVPEVDPPEELFNVDPKKCIGLKISPDKLNH--IRKERLKSLGL 217
>HYES_PIG (Q6Q2C2) Epoxide hydrolase 2 (EC 3.3.2.3) (Soluble epoxide| hydrolase) (SEH) (Epoxide hydratase) (Cytosolic epoxide hydrolase) (CEH) Length = 555 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 84 QIAQIPIRPPTSNPEEALPVGVSLAPDSLRSEAIKRDRVPRLCL 215 Q+ Q P PPTS AL G L +R ++ P +CL Sbjct: 220 QLLQTPALPPTSCDPSALSHGYVLIKPGVRLHFVEMGSGPAVCL 263
>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box| protein 8) (RNA helicase HRH1) Length = 1220 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +3 Query: 66 PNRRRNQIAQIPIRPPTSNPEEALPVGVSLAPDSLRSEAIKRDRVPRL 209 PNRRRN + + NP+ + + AP+ + ++++R R+ R+ Sbjct: 348 PNRRRNLVGETNEETSMRNPDRPTHLSLVSAPE-VEDDSLERKRLTRI 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,452,567 Number of Sequences: 219361 Number of extensions: 672684 Number of successful extensions: 2522 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2427 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2514 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
