ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome... 46 0.060
2gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 46 0.060
3gb|AC084816.14| Homo sapiens 12p BAC RP11-114G22 (Roswell Park C... 44 0.24
4emb|AL845524.5| Mouse DNA sequence from clone RP23-248D22 on chr... 44 0.24
5gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosom... 42 0.93
6gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 0.93
7gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, co... 42 0.93
8gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete... 42 0.93
9gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence 42 0.93
10ref|XM_567277.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 0.93
11emb|Z81034.1|CEC15C6 Caenorhabditis elegans Cosmid C15C6, comple... 42 0.93
12gb|AC093534.2| Homo sapiens chromosome 5 clone RP11-492L8, compl... 42 0.93
13gb|AC011400.5| Homo sapiens chromosome 5 clone CTB-31E20, comple... 42 0.93
14gb|AC022872.4|AC022872 Homo sapiens chromosome 15, clone RP11-39... 42 0.93
15emb|BX682227.3| Mouse DNA sequence from clone RP23-190N2 on chro... 42 0.93
16gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 0.93
17emb|AL672103.10| Mouse DNA sequence from clone RP23-375G11 on ch... 42 0.93
18gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genom... 40 3.7
19gb|AC137884.9| Mus musculus chromosome 1, clone RP23-152I6, comp... 40 3.7
20ref|NM_102584.2| Arabidopsis thaliana unknown protein AT1G28190 ... 40 3.7
21ref|NM_106644.3| Arabidopsis thaliana ATP binding / ATP-dependen... 40 3.7
22gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosom... 40 3.7
23ref|XM_481257.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
24gb|DQ216026.1| Taeniopygia guttata clone 0061P0027A07 proteasome... 40 3.7
25ref|XM_466371.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
26ref|XM_469258.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
27gb|AC133891.13| Mus musculus chromosome 1, clone RP23-287C17, co... 40 3.7
28gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, com... 40 3.7
29gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 3.7
30gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosom... 40 3.7
31gb|AC136019.3| Mus musculus BAC clone RP24-404D22 from chromosom... 40 3.7
32ref|XM_653356.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 3.7
33gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, co... 40 3.7
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.7
35gb|AC156985.12| Mus musculus chromosome 7, clone RP23-417L14, co... 40 3.7
36gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome... 40 3.7
37gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 3.7
38emb|AJ586885.2| Ipomoea yellow vein virus segment A, complete se... 40 3.7
39gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome... 40 3.7
40gb|AC122810.4| Mus musculus BAC clone RP23-276H4 from chromosome... 40 3.7
41gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomi... 40 3.7
42emb|Z70312.1|CEZC168 Caenorhabditis elegans Cosmid ZC168, comple... 40 3.7
43gb|AC117259.3| Mus musculus BAC clone RP24-492O19 from chromosom... 40 3.7
44gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, compl... 40 3.7
45gb|AC116679.9| Mus musculus chromosome 12, clone RP23-391I19, co... 40 3.7
46gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, comple... 40 3.7
47gb|AC117635.6| Mus musculus chromosome 12, clone RP23-203G2, com... 40 3.7
48gb|AC145819.1| Pan troglodytes BAC clone RP43-99J22 from 7, comp... 40 3.7
49gb|AC135959.22| Medicago truncatula clone mth2-26j19, complete s... 40 3.7
50emb|AL662924.24| Human DNA sequence from clone RP11-108J9 on chr... 40 3.7
51gb|AC021028.12| Homo sapiens chromosome 10 clone RP11-137H2, com... 40 3.7
52emb|AL353141.13| Human DNA sequence from clone RP11-58C3 on chro... 40 3.7
53ref|XM_790676.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 3.7
54gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome... 40 3.7
55emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on ch... 40 3.7
56gb|AC091160.6| Homo sapiens chromosome 8, clone CTD-2025J6, comp... 40 3.7
57gb|AC087116.13| Mus Musculus Strain C57BL6/J Chromosome 15~RP23-... 40 3.7
58gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 3.7
59gb|AC136213.2| Leishmania major strain Friedlin chromosome 27 cl... 40 3.7
60dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
61dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
62dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
63gb|AF236669.1|AF236669 Tilapia mossambica plasma membrane calciu... 40 3.7
64gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19... 40 3.7
65gb|AC022311.5| Homo sapiens BAC clone RP11-146M24 from 2, comple... 40 3.7
66dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
67dbj|AP003936.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
68dbj|AK118888.1| Arabidopsis thaliana At1g28190 mRNA for unknown ... 40 3.7
69dbj|AK106417.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
70emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chro... 40 3.7
71gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18... 40 3.7
72emb|BX284109.8| Mouse DNA sequence from clone RP23-247K12 on chr... 40 3.7
73dbj|AP006256.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 3.7
74emb|BX284680.6| Mouse DNA sequence from clone RP23-260E20 on chr... 40 3.7
75emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 3.7
76emb|BX004781.7| Zebrafish DNA sequence from clone CH211-149G8 in... 40 3.7
77emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on ch... 40 3.7
78gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome... 40 3.7
79gb|AC148012.5| Mus musculus BAC clone RP23-174D18 from 18, compl... 40 3.7
80gb|AC147559.5| Mus musculus BAC clone RP23-391P1 from 3, complet... 40 3.7
81emb|AL954328.8| Mouse DNA sequence from clone RP24-462B5 on chro... 40 3.7
82gb|U28729.1| Caenorhabditis elegans cosmid R153, complete sequence 40 3.7
83emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chr... 40 3.7
84emb|AL590429.9| Mouse DNA sequence from clone RP23-462O16 on chr... 40 3.7 
>gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome 7, complete sequence
          Length = 205980

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 25     gtgctgccgccttcttcttcgtcttct 51
              |||||||||||||||||||| ||||||
Sbjct: 147791 gtgctgccgccttcttcttcttcttct 147765
to top
>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 25     gtgctgccgccttcttcttcgtcttct 51
              |||||||||||||||||||| ||||||
Sbjct: 161005 gtgctgccgccttcttcttcttcttct 161031
to top
>gb|AC084816.14| Homo sapiens 12p BAC RP11-114G22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 148122

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 28    ctgccgccttcttcttcgtcttctcc 53
             ||||||||||||||||| ||||||||
Sbjct: 73105 ctgccgccttcttcttcttcttctcc 73080
to top
>emb|AL845524.5| Mouse DNA sequence from clone RP23-248D22 on chromosome 2, complete
             sequence
          Length = 174188

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 26    tgctgccgccttcttcttcgtcttct 51
             ||||||||||||||||||| ||||||
Sbjct: 89255 tgctgccgccttcttcttcttcttct 89230
to top
>gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosome 3, complete sequence
          Length = 175414

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 256   ttcttctcctttttctcctca 276
             |||||||||||||||||||||
Sbjct: 55856 ttcttctcctttttctcctca 55876
to top
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
             sequence
          Length = 1085720

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 31    ccgccttcttcttcgtcttctccac 55
             |||||||||||||| ||||||||||
Sbjct: 46902 ccgccttcttcttcttcttctccac 46926
to top
>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence
          Length = 189865

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   ttcttctcctttttctcctca 276
             |||||||||||||||||||||
Sbjct: 70777 ttcttctcctttttctcctca 70757
to top
>gb|AC146547.2| Gasterosteus aculeatus clone CH213-33E5, complete sequence
          Length = 207268

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     cgccttcttcttcgtcttctc 52
              |||||||||||||||||||||
Sbjct: 132407 cgccttcttcttcgtcttctc 132427
to top
>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence
          Length = 104578

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 216   gccgcagatcggctcggggtagcgc 240
             |||||||||||||||||||| ||||
Sbjct: 14497 gccgcagatcggctcggggtcgcgc 14473
to top
>ref|XM_567277.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNJ00200) partial mRNA
          Length = 1766

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 31   ccgccttcttcttcgtcttctccac 55
            |||||||||||||| ||||||||||
Sbjct: 1714 ccgccttcttcttcttcttctccac 1690
to top
>emb|Z81034.1|CEC15C6 Caenorhabditis elegans Cosmid C15C6, complete sequence
          Length = 20452

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 34   ccttcttcttcgtcttctcca 54
            |||||||||||||||||||||
Sbjct: 1788 ccttcttcttcgtcttctcca 1768
to top
>gb|AC093534.2| Homo sapiens chromosome 5 clone RP11-492L8, complete sequence
          Length = 168609

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 256   ttcttctcctttttctcctca 276
             |||||||||||||||||||||
Sbjct: 15321 ttcttctcctttttctcctca 15341
to top
>gb|AC011400.5| Homo sapiens chromosome 5 clone CTB-31E20, complete sequence
          Length = 160378

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 29     tgccgccttcttcttcgtcttctcc 53
              |||||||||||||||| ||||||||
Sbjct: 117404 tgccgccttcttcttcttcttctcc 117380
to top
>gb|AC022872.4|AC022872 Homo sapiens chromosome 15, clone RP11-390D11, complete sequence
          Length = 181923

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    ttctcctttttctcctcagtt 279
              |||||||||||||||||||||
Sbjct: 113970 ttctcctttttctcctcagtt 113990
to top
>emb|BX682227.3| Mouse DNA sequence from clone RP23-190N2 on chromosome X, complete
             sequence
          Length = 76641

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   ccagattcttctcctttttct 271
             |||||||||||||||||||||
Sbjct: 25824 ccagattcttctcctttttct 25804
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 118     gcaatcccgaggaagctctgc 138
               |||||||||||||||||||||
Sbjct: 1791363 gcaatcccgaggaagctctgc 1791383
to top
>emb|AL672103.10| Mouse DNA sequence from clone RP23-375G11 on chromosome X, complete
             sequence
          Length = 196568

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 27    gctgccgccttcttcttcgtcttct 51
             |||||||||||||||||| ||||||
Sbjct: 96986 gctgccgccttcttcttcttcttct 96962
to top
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete
             sequence
          Length = 129655

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cgccttcttcttcgtcttct 51
             ||||||||||||||||||||
Sbjct: 63426 cgccttcttcttcgtcttct 63445
to top
>gb|AC137884.9| Mus musculus chromosome 1, clone RP23-152I6, complete sequence
          Length = 194164

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 172955 ttcttctcctttttctcctc 172936
to top
>ref|NM_102584.2| Arabidopsis thaliana unknown protein AT1G28190 mRNA, complete cds
          Length = 1040

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  cttcttcttcgtcttctcca 54
           ||||||||||||||||||||
Sbjct: 792 cttcttcttcgtcttctcca 773
to top
>ref|NM_106644.3| Arabidopsis thaliana ATP binding / ATP-dependent DNA helicase/
          ATP-dependent helicase/ DNA binding / hydrolase, acting
          on acid anhydrides, in phosph> AT1G79950 mRNA, complete
          cds
          Length = 3123

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 26 tgctgccgccttcttcttcgtcttctcc 53
          |||| ||| |||||||||||||||||||
Sbjct: 67 tgcttccgtcttcttcttcgtcttctcc 94
to top
>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete
             sequence
          Length = 227936

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 36378 ttcttctcctttttctcctc 36397
to top
>ref|XM_481257.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 35  cttcttcttcgtcttctccactgc 58
           |||||||||| |||||||||||||
Sbjct: 531 cttcttcttcttcttctccactgc 508
to top
>gb|DQ216026.1| Taeniopygia guttata clone 0061P0027A07 proteasome 26S non-ATPase
            subunit 7-like mRNA, complete sequence
          Length = 1090

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  ttcttctcctttttctcctc 275
            ||||||||||||||||||||
Sbjct: 1015 ttcttctcctttttctcctc 996
to top
>ref|XM_466371.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 32  cgccttcttcttcgtcttctccac 55
           ||||||||||| ||||||||||||
Sbjct: 336 cgccttcttctccgtcttctccac 313
to top
>ref|XM_469258.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  cgccttcttcttcgtcttct 51
           ||||||||||||||||||||
Sbjct: 697 cgccttcttcttcgtcttct 678
to top
>gb|AC133891.13| Mus musculus chromosome 1, clone RP23-287C17, complete sequence
          Length = 172504

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 153344 ttcttctcctttttctcctc 153363
to top
>gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, complete sequence
          Length = 158782

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   tctcctttttctcctcagtt 279
             ||||||||||||||||||||
Sbjct: 87442 tctcctttttctcctcagtt 87423
to top
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     ccgccttcttcttcgtcttc 50
              ||||||||||||||||||||
Sbjct: 770991 ccgccttcttcttcgtcttc 770972
to top
>gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosome 10, complete
             sequence
          Length = 236428

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 26199 ttcttctcctttttctcctc 26218
to top
>gb|AC136019.3| Mus musculus BAC clone RP24-404D22 from chromosome 14, complete sequence
          Length = 162787

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 130126 ttcttctcctttttctcctc 130145
to top
>ref|XM_653356.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0844.2), mRNA
          Length = 2247

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 32  cgccttcttcttcgtcttct 51
           ||||||||||||||||||||
Sbjct: 807 cgccttcttcttcgtcttct 788
to top
>gb|AC113475.12| Mus musculus chromosome 12, clone RP23-304B1, complete sequence
          Length = 177032

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    ccttcttcttcgtcttctcc 53
             ||||||||||||||||||||
Sbjct: 20548 ccttcttcttcgtcttctcc 20567
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 32       cgccttcttcttcgtcttct 51
                ||||||||||||||||||||
Sbjct: 26415386 cgccttcttcttcgtcttct 26415405
to top
>gb|AC156985.12| Mus musculus chromosome 7, clone RP23-417L14, complete sequence
          Length = 179492

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 251    ccagattcttctcctttttctcct 274
              |||||| |||||||||||||||||
Sbjct: 162688 ccagatacttctcctttttctcct 162711
to top
>gb|AC165293.2| Mus musculus BAC clone RP23-268A5 from chromosome 12, complete sequence
          Length = 179330

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     ctgccgccttcttcttcgtcttct 51
              ||||||||||||||||| ||||||
Sbjct: 119109 ctgccgccttcttcttcttcttct 119086
to top
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      agcagcacgcgtgctgccgc 34
               ||||||||||||||||||||
Sbjct: 3496698 agcagcacgcgtgctgccgc 3496679
to top
>emb|AJ586885.2| Ipomoea yellow vein virus segment A, complete sequence
          Length = 2830

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 255  attcttctcctttttctcct 274
            ||||||||||||||||||||
Sbjct: 2139 attcttctcctttttctcct 2120
to top
>gb|AC122511.5| Mus musculus BAC clone RP24-446A8 from chromosome 6, complete sequence
          Length = 157847

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    ctgccgccttcttcttcgtcttct 51
             ||||||||||||||||| ||||||
Sbjct: 52777 ctgccgccttcttcttcttcttct 52800
to top
>gb|AC122810.4| Mus musculus BAC clone RP23-276H4 from chromosome 10, complete sequence
          Length = 177681

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 11988 ttcttctcctttttctcctc 12007
to top
>gb|AC021044.5| Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete
             sequence
          Length = 121720

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    cttcttcttcgtcttctcca 54
             ||||||||||||||||||||
Sbjct: 97936 cttcttcttcgtcttctcca 97917
to top
>emb|Z70312.1|CEZC168 Caenorhabditis elegans Cosmid ZC168, complete sequence
          Length = 26307

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 23768 ttcttctcctttttctcctc 23787
to top
>gb|AC117259.3| Mus musculus BAC clone RP24-492O19 from chromosome 12, complete
             sequence
          Length = 145944

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    ccttcttcttcgtcttctcc 53
             ||||||||||||||||||||
Sbjct: 24210 ccttcttcttcgtcttctcc 24191
to top
>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence
          Length = 172114

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     ctgccgccttcttcttcgtcttct 51
              ||||||||||||||||| ||||||
Sbjct: 125869 ctgccgccttcttcttcttcttct 125846
to top
>gb|AC116679.9| Mus musculus chromosome 12, clone RP23-391I19, complete sequence
          Length = 261992

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 151196 ttcttctcctttttctcctc 151177
to top
>gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, complete sequence
          Length = 171457

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    tctcctttttctcctcagtt 279
              ||||||||||||||||||||
Sbjct: 100553 tctcctttttctcctcagtt 100572
to top
>gb|AC117635.6| Mus musculus chromosome 12, clone RP23-203G2, complete sequence
          Length = 270063

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 141236 ttcttctcctttttctcctc 141217
to top
>gb|AC145819.1| Pan troglodytes BAC clone RP43-99J22 from 7, complete sequence
          Length = 159950

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    tctcctttttctcctcagtt 279
              ||||||||||||||||||||
Sbjct: 148451 tctcctttttctcctcagtt 148432
to top
>gb|AC135959.22| Medicago truncatula clone mth2-26j19, complete sequence
          Length = 95871

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 34    ccttcttcttcgtcttctccactg 57
             ||||||||||| ||||||||||||
Sbjct: 83397 ccttcttcttcttcttctccactg 83420
to top
>emb|AL662924.24| Human DNA sequence from clone RP11-108J9 on chromosome 1 Contains the
             3' end of the CLIC4 gene for chloride intracellular
             channel 4 and three CpG islands, complete sequence
          Length = 82931

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   attcttctcctttttctcct 274
             ||||||||||||||||||||
Sbjct: 39023 attcttctcctttttctcct 39004
to top
>gb|AC021028.12| Homo sapiens chromosome 10 clone RP11-137H2, complete sequence
          Length = 161803

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 138470 ttcttctcctttttctcctc 138489
to top
>emb|AL353141.13| Human DNA sequence from clone RP11-58C3 on chromosome 9 Contains part of
              the PAPPA gene for pregnancy-associated plasma protein A
              and a novel gene, complete sequence
          Length = 114455

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    attcttctcctttttctcct 274
              ||||||||||||||||||||
Sbjct: 110915 attcttctcctttttctcct 110934
to top
>ref|XM_790676.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC591095 (LOC591095), mRNA
          Length = 423

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  cttcttcttcgtcttctcca 54
           ||||||||||||||||||||
Sbjct: 412 cttcttcttcgtcttctcca 393
to top
>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence
          Length = 219067

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 145760 ttcttctcctttttctcctc 145779
to top
>emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on chromosome 11 Contains the
              3' end of the Vdac1 gene for voltage-dependent anion
              channel 1, a novel gene (9530068E07Rik), a
              ubiquinol-cytochrome c reductase subunit (Uqcr) pseudogene,
              a novel pseudogene, a ribosomal protein S28 (Rps28)
              pseudogene and a CpG island, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 136041 ttcttctcctttttctcctc 136060
to top
>gb|AC091160.6| Homo sapiens chromosome 8, clone CTD-2025J6, complete sequence
          Length = 215326

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 147767 ttcttctcctttttctcctc 147786
to top
>gb|AC087116.13| Mus Musculus Strain C57BL6/J Chromosome 15~RP23-336B1, complete
             sequence
          Length = 218476

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 97200 ttcttctcctttttctcctc 97181
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      tgctgccgccttcttcttcg 45
               ||||||||||||||||||||
Sbjct: 1469095 tgctgccgccttcttcttcg 1469114
to top
>gb|AC136213.2| Leishmania major strain Friedlin chromosome 27 clone LB02059, complete
             sequence
          Length = 102826

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ccgccttcttcttcgtcttc 50
             ||||||||||||||||||||
Sbjct: 25814 ccgccttcttcttcgtcttc 25795
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 35       cttcttcttcgtcttctccactgc 58
                |||||||||| |||||||||||||
Sbjct: 11024574 cttcttcttcttcttctccactgc 11024551
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 32       cgccttcttcttcgtcttct 51
                ||||||||||||||||||||
Sbjct: 26506695 cgccttcttcttcgtcttct 26506714
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 32       cgccttcttcttcgtcttctccac 55
                ||||||||||| ||||||||||||
Sbjct: 21987403 cgccttcttctccgtcttctccac 21987426
to top
>gb|AF236669.1|AF236669 Tilapia mossambica plasma membrane calcium ATPase (PMCA) mRNA,
           partial cds
          Length = 3346

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 ttcttctcctttttctcctc 275
           ||||||||||||||||||||
Sbjct: 917 ttcttctcctttttctcctc 898
to top
>gb|AC011717.6|AC011717 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete
             sequence
          Length = 111301

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 26    tgctgccgccttcttcttcgtcttctcc 53
             |||| ||| |||||||||||||||||||
Sbjct: 30534 tgcttccgtcttcttcttcgtcttctcc 30507
to top
>gb|AC022311.5| Homo sapiens BAC clone RP11-146M24 from 2, complete sequence
          Length = 154084

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 77120 ttcttctcctttttctcctc 77101
to top
>dbj|AP005699.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0046L23
          Length = 100041

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    cgccttcttcttcgtcttctccac 55
             ||||||||||| ||||||||||||
Sbjct: 36025 cgccttcttctccgtcttctccac 36048
to top
>dbj|AP003936.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1003_E05
          Length = 137352

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 35     cttcttcttcgtcttctccactgc 58
              |||||||||| |||||||||||||
Sbjct: 118301 cttcttcttcttcttctccactgc 118278
to top
>dbj|AK118888.1| Arabidopsis thaliana At1g28190 mRNA for unknown protein, complete
           cds, clone: RAFL21-22-F21
          Length = 1038

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  cttcttcttcgtcttctcca 54
           ||||||||||||||||||||
Sbjct: 792 cttcttcttcgtcttctcca 773
to top
>dbj|AK106417.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A07, full
            insert sequence
          Length = 1624

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   cgccttcttcttcgtcttct 51
            ||||||||||||||||||||
Sbjct: 1202 cgccttcttcttcgtcttct 1183
to top
>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete
              sequence
          Length = 201341

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 105103 ttcttctcctttttctcctc 105122
to top
>gb|AC009322.1|AC009322 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete
             sequence
          Length = 116905

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 26    tgctgccgccttcttcttcgtcttctcc 53
             |||| ||| |||||||||||||||||||
Sbjct: 10410 tgcttccgtcttcttcttcgtcttctcc 10437
to top
>emb|BX284109.8| Mouse DNA sequence from clone RP23-247K12 on chromosome X, complete
             sequence
          Length = 121039

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 70491 ttcttctcctttttctcctc 70510
to top
>dbj|AP006256.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-433N8, complete
              sequence
          Length = 198664

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    attcttctcctttttctcct 274
              ||||||||||||||||||||
Sbjct: 146137 attcttctcctttttctcct 146156
to top
>emb|BX284680.6| Mouse DNA sequence from clone RP23-260E20 on chromosome X, complete
             sequence
          Length = 168173

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    ctgccgccttcttcttcgtcttct 51
             ||||||||||||||||| ||||||
Sbjct: 26444 ctgccgccttcttcttcttcttct 26467
to top
>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
             sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cgccttcttcttcgtcttct 51
             ||||||||||||||||||||
Sbjct: 35037 cgccttcttcttcgtcttct 35056
to top
>emb|BX004781.7| Zebrafish DNA sequence from clone CH211-149G8 in linkage group 1,
             complete sequence
          Length = 169991

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 25115 ttcttctcctttttctcctc 25096
to top
>emb|CT025540.12| Mouse DNA sequence from clone RP24-280B23 on chromosome 12, complete
              sequence
          Length = 199060

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     ctgccgccttcttcttcgtcttct 51
              ||||||||||||||||| ||||||
Sbjct: 175692 ctgccgccttcttcttcttcttct 175715
to top
>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence
          Length = 234088

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 28    ctgccgccttcttcttcgtcttct 51
             ||||||||||||||||| ||||||
Sbjct: 78266 ctgccgccttcttcttcttcttct 78289
to top
>gb|AC148012.5| Mus musculus BAC clone RP23-174D18 from 18, complete sequence
          Length = 226568

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 28    ctgccgccttcttcttcgtcttct 51
             ||||||||||||||||| ||||||
Sbjct: 22114 ctgccgccttcttcttcttcttct 22091
to top
>gb|AC147559.5| Mus musculus BAC clone RP23-391P1 from 3, complete sequence
          Length = 188305

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 163870 ttcttctcctttttctcctc 163851
to top
>emb|AL954328.8| Mouse DNA sequence from clone RP24-462B5 on chromosome 4, complete
             sequence
          Length = 42328

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttcttctcctttttctcctc 275
             ||||||||||||||||||||
Sbjct: 22814 ttcttctcctttttctcctc 22795
to top
>gb|U28729.1| Caenorhabditis elegans cosmid R153, complete sequence
          Length = 29626

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ccgccttcttcttcgtcttc 50
             ||||||||||||||||||||
Sbjct: 10483 ccgccttcttcttcgtcttc 10502
to top
>emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chromosome 4, complete
            sequence
          Length = 160681

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   ccttcttcttcgtcttctcc 53
            ||||||||||||||||||||
Sbjct: 7937 ccttcttcttcgtcttctcc 7956
to top
>emb|AL590429.9| Mouse DNA sequence from clone RP23-462O16 on chromosome 2, complete
              sequence
          Length = 190669

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttcttctcctttttctcctc 275
              ||||||||||||||||||||
Sbjct: 104816 ttcttctcctttttctcctc 104797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,950,519
Number of Sequences: 3902068
Number of extensions: 1950519
Number of successful extensions: 62285
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61965
Number of HSP's gapped (non-prelim): 320
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top