ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
2dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
3dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic D... 218 1e-53
4dbj|AK069993.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 5e-44
5gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence 141 3e-30
6ref|NM_193243.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9ref|XM_474682.1| Oryza sativa (japonica cultivar-group), predic... 44 0.47
10ref|XM_468579.1| Oryza sativa (japonica cultivar-group), predic... 44 0.47
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.47
12gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.47
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.47
15gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.47
16dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.47
17dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
18dbj|AK071416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
19dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
20dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
21emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4,... 44 0.47
22emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 44 0.47
23ref|NM_185634.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
24dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.9
25dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26dbj|AK100178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
27ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 40 7.4
28ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 40 7.4
29ref|XM_482200.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
30ref|XM_482188.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
31gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 7.4
32gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 7.4
33gb|AC132463.3| Mus musculus BAC clone RP23-42M5 from chromosome ... 40 7.4
34emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.4
35emb|BX640434.1| Bordetella parapertussis strain 12822, complete ... 40 7.4
36emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 40 7.4
37emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 7.4
38gb|AC153153.4| Mus musculus BAC clone RP23-79G18 from chromosome... 40 7.4
39gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence 40 7.4
40gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, compl... 40 7.4
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
42dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
43dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
44dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
45dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
46dbj|AK068286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
47emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chro... 40 7.4
48gb|AC112266.6| Mus musculus BAC clone RP23-422B6 from 13, comple... 40 7.4 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  218 bits (110), Expect = 1e-53
 Identities = 143/154 (92%)
 Strand = Plus / Minus

                                                                           
Query: 118     tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
               |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 8045822 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggtgtct 8045763

                                                                           
Query: 178     ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
               || ||||||||||| |||||  |||||| ||||||||||| ||||||||||||||||| |
Sbjct: 8045762 ccgccgtcccggacatcttccgccaccccgacccctacgcctccgtcccgctcgctccac 8045703

                                                 
Query: 238     cgggcgtctccatccccgtcgtcgacctctccct 271
               | ||||||||||||||||||||||||||||||||
Sbjct: 8045702 ccggcgtctccatccccgtcgtcgacctctccct 8045669



 Score =  194 bits (98), Expect = 2e-46
 Identities = 140/154 (90%)
 Strand = Plus / Minus

                                                                           
Query: 118     tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
               |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 8052515 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggcgtct 8052456

                                                                           
Query: 178     ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
               |  ||||||||| | |||||  |||||| ||||||||||| |||||||| |||||||| |
Sbjct: 8052455 ctgccgtcccggtcatcttccgccaccccgacccctacgcctccgtccccctcgctccac 8052396

                                                 
Query: 238     cgggcgtctccatccccgtcgtcgacctctccct 271
               | ||||||||||||||||||||| ||||||||||
Sbjct: 8052395 ccggcgtctccatccccgtcgtcaacctctccct 8052362



 Score =  159 bits (80), Expect = 1e-35
 Identities = 179/212 (84%)
 Strand = Plus / Minus

                                                                           
Query: 315     gactggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcg 374
               |||||||| |||||| ||||||||||| || | ||||| ||||||||  ||| | |||| 
Sbjct: 8052318 gactgggggttcttctacctcgtcaaccaccacgcccttgtcccctccggcttcaccgcc 8052259

                                                                           
Query: 375     agggccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcac 434
                ||  ||||||||| || |||||||||||||||||||||||  | |||||| | ||||||
Sbjct: 8052258 gggctcctcgccgccgtccgcgccttcaacgagctccccgccgcggagcgcgccgcgcac 8052199

                                                                           
Query: 435     tacggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctcc 494
               ||||||||  || ||| ||||||||||  ||||||||||||||| ||||||||||| || 
Sbjct: 8052198 tacggccgctccgtggacggcggggtcagctactcctccaacgtcgacctgtaccggtcg 8052139

                                               
Query: 495     gccgccgcgagctggcgcgacaccatacaggt 526
               | ||||||||||||||||||||| || |||||
Sbjct: 8052138 ggcgccgcgagctggcgcgacacgatccaggt 8052107



 Score =  109 bits (55), Expect = 1e-20
 Identities = 166/203 (81%)
 Strand = Plus / Minus

                                                                           
Query: 318     tggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcgagg 377
               ||||| |||||| ||||||||||| || | |||||||||||| |  ||| | |||   ||
Sbjct: 8045622 tgggggttcttctacctcgtcaaccaccacgccctcgtcccccccggcttcaccgacggg 8045563

                                                                           
Query: 378     gccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcactac 437
                 |||||||||   ||||||||||||||| ||||| ||  | |||||| | |||||||||
Sbjct: 8045562 ctcctcgccgccacgcgcgccttcaacgaactcccggccacggagcgcgccgcgcactac 8045503

                                                                           
Query: 438     ggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctccgcc 497
               |||||  || ||| |||||||||   ||||| ||||||| | ||||||||||| |||| |
Sbjct: 8045502 ggccgctccgtggacggcggggtggactacttctccaacttcgacctgtaccggtccggc 8045443

                                      
Query: 498     gccgcgagctggcgcgacaccat 520
               |||||||||||||||||||||||
Sbjct: 8045442 gccgcgagctggcgcgacaccat 8045420



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 244     tctccatccccgtcgtcgacctctc 268
               ||||| |||||||||||||||||||
Sbjct: 3144674 tctccgtccccgtcgtcgacctctc 3144698



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 152      ccgcggcctcgtcgagtccg 171
                ||||||||||||||||||||
Sbjct: 22997587 ccgcggcctcgtcgagtccg 22997568



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     ccatccccgtcgtcgacctc 266
               ||||||||||||||||||||
Sbjct: 3907447 ccatccccgtcgtcgacctc 3907466



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 247     ccatccccgtcgtcgacctc 266
               ||||||||||||||||||||
Sbjct: 3857568 ccatccccgtcgtcgacctc 3857587
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046H10
          Length = 155544

 Score =  218 bits (110), Expect = 1e-53
 Identities = 143/154 (92%)
 Strand = Plus / Minus

                                                                          
Query: 118    tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
              |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 153340 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggtgtct 153281

                                                                          
Query: 178    ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
              || ||||||||||| |||||  |||||| ||||||||||| ||||||||||||||||| |
Sbjct: 153280 ccgccgtcccggacatcttccgccaccccgacccctacgcctccgtcccgctcgctccac 153221

                                                
Query: 238    cgggcgtctccatccccgtcgtcgacctctccct 271
              | ||||||||||||||||||||||||||||||||
Sbjct: 153220 ccggcgtctccatccccgtcgtcgacctctccct 153187



 Score =  109 bits (55), Expect = 1e-20
 Identities = 166/203 (81%)
 Strand = Plus / Minus

                                                                          
Query: 318    tggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcgagg 377
              ||||| |||||| ||||||||||| || | |||||||||||| |  ||| | |||   ||
Sbjct: 153140 tgggggttcttctacctcgtcaaccaccacgccctcgtcccccccggcttcaccgacggg 153081

                                                                          
Query: 378    gccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcactac 437
                |||||||||   ||||||||||||||| ||||| ||  | |||||| | |||||||||
Sbjct: 153080 ctcctcgccgccacgcgcgccttcaacgaactcccggccacggagcgcgccgcgcactac 153021

                                                                          
Query: 438    ggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctccgcc 497
              |||||  || ||| |||||||||   ||||| ||||||| | ||||||||||| |||| |
Sbjct: 153020 ggccgctccgtggacggcggggtggactacttctccaacttcgacctgtaccggtccggc 152961

                                     
Query: 498    gccgcgagctggcgcgacaccat 520
              |||||||||||||||||||||||
Sbjct: 152960 gccgcgagctggcgcgacaccat 152938
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>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score =  218 bits (110), Expect = 1e-53
 Identities = 143/154 (92%)
 Strand = Plus / Minus

                                                                         
Query: 118   tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
             |||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 69591 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggtgtct 69532

                                                                         
Query: 178   ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
             || ||||||||||| |||||  |||||| ||||||||||| ||||||||||||||||| |
Sbjct: 69531 ccgccgtcccggacatcttccgccaccccgacccctacgcctccgtcccgctcgctccac 69472

                                               
Query: 238   cgggcgtctccatccccgtcgtcgacctctccct 271
             | ||||||||||||||||||||||||||||||||
Sbjct: 69471 ccggcgtctccatccccgtcgtcgacctctccct 69438



 Score =  194 bits (98), Expect = 2e-46
 Identities = 140/154 (90%)
 Strand = Plus / Minus

                                                                         
Query: 118   tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
             |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 76284 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggcgtct 76225

                                                                         
Query: 178   ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
             |  ||||||||| | |||||  |||||| ||||||||||| |||||||| |||||||| |
Sbjct: 76224 ctgccgtcccggtcatcttccgccaccccgacccctacgcctccgtccccctcgctccac 76165

                                               
Query: 238   cgggcgtctccatccccgtcgtcgacctctccct 271
             | ||||||||||||||||||||| ||||||||||
Sbjct: 76164 ccggcgtctccatccccgtcgtcaacctctccct 76131



 Score =  159 bits (80), Expect = 1e-35
 Identities = 179/212 (84%)
 Strand = Plus / Minus

                                                                         
Query: 315   gactggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcg 374
             |||||||| |||||| ||||||||||| || | ||||| ||||||||  ||| | |||| 
Sbjct: 76087 gactgggggttcttctacctcgtcaaccaccacgcccttgtcccctccggcttcaccgcc 76028

                                                                         
Query: 375   agggccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcac 434
              ||  ||||||||| || |||||||||||||||||||||||  | |||||| | ||||||
Sbjct: 76027 gggctcctcgccgccgtccgcgccttcaacgagctccccgccgcggagcgcgccgcgcac 75968

                                                                         
Query: 435   tacggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctcc 494
             ||||||||  || ||| ||||||||||  ||||||||||||||| ||||||||||| || 
Sbjct: 75967 tacggccgctccgtggacggcggggtcagctactcctccaacgtcgacctgtaccggtcg 75908

                                             
Query: 495   gccgccgcgagctggcgcgacaccatacaggt 526
             | ||||||||||||||||||||| || |||||
Sbjct: 75907 ggcgccgcgagctggcgcgacacgatccaggt 75876



 Score =  109 bits (55), Expect = 1e-20
 Identities = 166/203 (81%)
 Strand = Plus / Minus

                                                                         
Query: 318   tggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcgagg 377
             ||||| |||||| ||||||||||| || | |||||||||||| |  ||| | |||   ||
Sbjct: 69391 tgggggttcttctacctcgtcaaccaccacgccctcgtcccccccggcttcaccgacggg 69332

                                                                         
Query: 378   gccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcactac 437
               |||||||||   ||||||||||||||| ||||| ||  | |||||| | |||||||||
Sbjct: 69331 ctcctcgccgccacgcgcgccttcaacgaactcccggccacggagcgcgccgcgcactac 69272

                                                                         
Query: 438   ggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctccgcc 497
             |||||  || ||| |||||||||   ||||| ||||||| | ||||||||||| |||| |
Sbjct: 69271 ggccgctccgtggacggcggggtggactacttctccaacttcgacctgtaccggtccggc 69212

                                    
Query: 498   gccgcgagctggcgcgacaccat 520
             |||||||||||||||||||||||
Sbjct: 69211 gccgcgagctggcgcgacaccat 69189
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>dbj|AK069993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E01, full
           insert sequence
          Length = 1387

 Score =  186 bits (94), Expect = 5e-44
 Identities = 139/154 (90%)
 Strand = Plus / Plus

                                                                       
Query: 118 tcgtcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtct 177
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 136 tcgtcaaggccttcgacgagacacgcaccggcgtccgcggcctcgtcgagtccggcgtct 195

                                                                       
Query: 178 ccaccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccc 237
           |  ||||||||| | |||||   ||||| ||||||||||| |||||||| |||||||| |
Sbjct: 196 ctgccgtcccggtcatcttccgtcaccccgacccctacgcctccgtccccctcgctccac 255

                                             
Query: 238 cgggcgtctccatccccgtcgtcgacctctccct 271
           | ||||||||||||||||||||| ||||||||||
Sbjct: 256 ccggcgtctccatccccgtcgtcaacctctccct 289



 Score =  159 bits (80), Expect = 1e-35
 Identities = 179/212 (84%)
 Strand = Plus / Plus

                                                                       
Query: 315 gactggggcttcttccacctcgtcaactacgaggccctcgtcccctctagctaccccgcg 374
           |||||||| |||||| ||||||||||| || | ||||| ||||||||  ||| | |||| 
Sbjct: 333 gactgggggttcttctacctcgtcaaccaccacgcccttgtcccctccggcttcaccgcc 392

                                                                       
Query: 375 agggccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcgctctgcgcac 434
            ||  ||||||||| || |||||||||||||||||||||||  | |||||| | ||||||
Sbjct: 393 gggctcctcgccgccgtccgcgccttcaacgagctccccgccgcggagcgcgccgcgcac 452

                                                                       
Query: 435 tacggccgggccatgggcggcggggtctcctactcctccaacgtggacctgtaccgctcc 494
           ||||||||  || ||| ||||||||||  ||||||||||||||| ||||||||||| || 
Sbjct: 453 tacggccgctccgtggacggcggggtcagctactcctccaacgtcgacctgtaccggtcg 512

                                           
Query: 495 gccgccgcgagctggcgcgacaccatacaggt 526
           | ||||||||||||||||||||| || |||||
Sbjct: 513 ggcgccgcgagctggcgcgacacgatccaggt 544
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>gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence
          Length = 176679

 Score =  141 bits (71), Expect = 3e-30
 Identities = 131/151 (86%)
 Strand = Plus / Plus

                                                                         
Query: 121   tcaaggccttcgacgagtcccgcaccggcgtccgcggcctcgtcgagtccggcgtctcca 180
             ||||||||||||||||  ||||||| ||||| || |||||||| ||||| ||||||||  
Sbjct: 94757 tcaaggccttcgacgacgcccgcacgggcgtgcgaggcctcgtggagtcgggcgtctcgt 94816

                                                                         
Query: 181   ccgtcccggacctcttcgtccacccggacccctacgcgtccgtcccgctcgctcccccgg 240
             |||||||||| ||||||  |||| ||||||||||||| ||| |||||||||| || || |
Sbjct: 94817 ccgtcccggagctcttccgccacgcggacccctacgcctccatcccgctcgccccgcccg 94876

                                            
Query: 241   gcgtctccatccccgtcgtcgacctctccct 271
             |||| |||||||||||||| |||||||||||
Sbjct: 94877 gcgtttccatccccgtcgtagacctctccct 94907



 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/156 (85%)
 Strand = Plus / Plus

                                                                         
Query: 365   ctaccccgcgagggccctcgccgcggtgcgcgccttcaacgagctccccgcacccgagcg 424
             |||||||| | | ||| |||| |||||||||||||||||||| |||||||| | ||||||
Sbjct: 95022 ctaccccgagcgcgccttcgcggcggtgcgcgccttcaacgaactccccgcccacgagcg 95081

                                                                         
Query: 425   ctctgcgcactacggccgggccatgggcggcggggtctcctactcctccaacgtggacct 484
             | |  |||||||| |||| ||| ||| ||||||||||  ||||||||||||||| |||||
Sbjct: 95082 cgcgccgcactacagccgcgccgtggacggcggggtcaactactcctccaacgtcgacct 95141

                                                 
Query: 485   gtaccgctccgccgccgcgagctggcgcgacaccat 520
             ||||  |||| |||| || |||||||||||||||||
Sbjct: 95142 gtacaactcccccgctgccagctggcgcgacaccat 95177



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 317   ctggggcttcttccacctcgtcaac 341
             |||||||||||||||||||||||||
Sbjct: 94953 ctggggcttcttccacctcgtcaac 94977
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>ref|NM_193243.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1191

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 145 ccggcgtccgcggcctcgtcgagtccggcg 174
           ||||||||||||||||||||||||| ||||
Sbjct: 68  ccggcgtccgcggcctcgtcgagtctggcg 97
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 145      ccggcgtccgcggcctcgtcgagtccggcg 174
                ||||||||||||||||||||||||| ||||
Sbjct: 19504410 ccggcgtccgcggcctcgtcgagtctggcg 19504381
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>dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0086A10
          Length = 151071

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 145    ccggcgtccgcggcctcgtcgagtccggcg 174
              ||||||||||||||||||||||||| ||||
Sbjct: 113226 ccggcgtccgcggcctcgtcgagtctggcg 113197
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>ref|XM_474682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1128

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 ccggcgtccgcggcctcgtcgagtccggcg 174
           ||||||||||||||||||||| ||| ||||
Sbjct: 86  ccggcgtccgcggcctcgtcgcgtcgggcg 115
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>ref|XM_468579.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctccatccccgtcgtcgacctc 266
           ||||||||||||||||||||||
Sbjct: 105 ctccatccccgtcgtcgacctc 126
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 245     ctccatccccgtcgtcgacctc 266
               ||||||||||||||||||||||
Sbjct: 1224483 ctccatccccgtcgtcgacctc 1224462
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 383     cgccgcggtgcgcgccttcaacgagc 408
               |||| |||||||||||||||||||||
Sbjct: 5422233 cgcctcggtgcgcgccttcaacgagc 5422258



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 488     ccgctccgccgccgcgagctg 508
               |||||||||||||||||||||
Sbjct: 2087284 ccgctccgccgccgcgagctg 2087264
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 145     ccggcgtccgcggcctcgtcgagtccggcg 174
               ||||||||||||||||||||| ||| ||||
Sbjct: 5555349 ccggcgtccgcggcctcgtcgcgtcgggcg 5555378
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 245     ctccatccccgtcgtcgacctc 266
               ||||||||||||||||||||||
Sbjct: 1224481 ctccatccccgtcgtcgacctc 1224460
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>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
             complete sequence
          Length = 146241

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 245   ctccatccccgtcgtcgacctc 266
             ||||||||||||||||||||||
Sbjct: 29385 ctccatccccgtcgtcgacctc 29364
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 383     cgccgcggtgcgcgccttcaacgagc 408
               |||| |||||||||||||||||||||
Sbjct: 8927470 cgcctcggtgcgcgccttcaacgagc 8927495
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>dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B12, full
           insert sequence
          Length = 1268

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctccatccccgtcgtcgacctc 266
           ||||||||||||||||||||||
Sbjct: 133 ctccatccccgtcgtcgacctc 154
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>dbj|AK071416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093A18, full
           insert sequence
          Length = 875

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctccatccccgtcgtcgacctc 266
           ||||||||||||||||||||||
Sbjct: 136 ctccatccccgtcgtcgacctc 157
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>dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full
           insert sequence
          Length = 1285

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 245 ctccatccccgtcgtcgacctc 266
           ||||||||||||||||||||||
Sbjct: 136 ctccatccccgtcgtcgacctc 157
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>dbj|AK067970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E20, full
           insert sequence
          Length = 1387

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 145 ccggcgtccgcggcctcgtcgagtccggcg 174
           ||||||||||||||||||||| ||| ||||
Sbjct: 96  ccggcgtccgcggcctcgtcgcgtcgggcg 125
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>emb|AL662994.3|OSJN00192 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006L01,
             complete sequence
          Length = 162227

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 145   ccggcgtccgcggcctcgtcgagtccggcg 174
             ||||||||||||||||||||| ||| ||||
Sbjct: 12556 ccggcgtccgcggcctcgtcgcgtcgggcg 12585
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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
              complete sequence
          Length = 150283

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 145    ccggcgtccgcggcctcgtcgagtccggcg 174
              ||||||||||||||||||||| ||| ||||
Sbjct: 109979 ccggcgtccgcggcctcgtcgcgtcgggcg 110008
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>ref|NM_185634.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1262

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 244 tctccatccccgtcgtcgacctctc 268
           ||||| |||||||||||||||||||
Sbjct: 207 tctccgtccccgtcgtcgacctctc 231
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 144    accggcgtccgcggcctcgtcgagt 168
              ||||||||||||||||| |||||||
Sbjct: 723504 accggcgtccgcggcctggtcgagt 723528
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   tctccatccccgtcgtcgacctctc 268
             ||||| |||||||||||||||||||
Sbjct: 98859 tctccgtccccgtcgtcgacctctc 98883
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>dbj|AK100178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029O18, full
           insert sequence
          Length = 1263

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 244 tctccatccccgtcgtcgacctctc 268
           ||||| |||||||||||||||||||
Sbjct: 207 tctccgtccccgtcgtcgacctctc 231
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>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ccatccccgtcgtcgacctc 266
           ||||||||||||||||||||
Sbjct: 143 ccatccccgtcgtcgacctc 162
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ccatccccgtcgtcgacctc 266
           ||||||||||||||||||||
Sbjct: 143 ccatccccgtcgtcgacctc 162
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>ref|XM_482200.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1131

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 156 ggcctcgtcgagtccggcgtctccaccgtccc 187
           |||||||||||  |||||||| ||||||||||
Sbjct: 73  ggcctcgtcgacgccggcgtcaccaccgtccc 104
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>ref|XM_482188.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1478

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 156 ggcctcgtcgagtccggcgtctccaccgtccc 187
           |||||||||||  |||||||| ||||||||||
Sbjct: 146 ggcctcgtcgacgccggcgtcaccaccgtccc 177
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gcgtccgcggcctcgtcgag 167
              ||||||||||||||||||||
Sbjct: 970947 gcgtccgcggcctcgtcgag 970966
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 487     accgctccgccgccgcgagc 506
               ||||||||||||||||||||
Sbjct: 2700341 accgctccgccgccgcgagc 2700322
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>gb|AC132463.3| Mus musculus BAC clone RP23-42M5 from chromosome 13, complete sequence
          Length = 151340

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 11     cccttcccggccccatcccctcca 34
              |||||||| |||||||||||||||
Sbjct: 126719 cccttccctgccccatcccctcca 126696
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gccgcggtgcgcgccttcaa 403
             ||||||||||||||||||||
Sbjct: 14632 gccgcggtgcgcgccttcaa 14651
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>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14
          Length = 344805

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    gccgcggtgcgcgccttcaa 403
              ||||||||||||||||||||
Sbjct: 309211 gccgcggtgcgcgccttcaa 309230
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gccgcggtgcgcgccttcaa 403
             ||||||||||||||||||||
Sbjct: 47222 gccgcggtgcgcgccttcaa 47241
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   agggccctcgccgcggtgcg 394
             ||||||||||||||||||||
Sbjct: 85036 agggccctcgccgcggtgcg 85055
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>gb|AC153153.4| Mus musculus BAC clone RP23-79G18 from chromosome 13, complete sequence
          Length = 222383

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    accatacaggtggggttcgg 535
              ||||||||||||||||||||
Sbjct: 190584 accatacaggtggggttcgg 190603
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>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence
          Length = 165072

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   gtgcgcgccttcaacgagct 409
             ||||||||||||||||||||
Sbjct: 29318 gtgcgcgccttcaacgagct 29299
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>gb|AC018695.6| Homo sapiens BAC clone RP11-568J23 from 16, complete sequence
          Length = 211001

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    tcccgctcgctcccccgggc 242
              ||||||||||||||||||||
Sbjct: 123344 tcccgctcgctcccccgggc 123363
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 156      ggcctcgtcgagtccggcgtctccaccgtccc 187
                |||||||||||  |||||||| ||||||||||
Sbjct: 18562970 ggcctcgtcgacgccggcgtcaccaccgtccc 18562939



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 156      ggcctcgtcgagtccggcgtctccaccgtccc 187
                |||||||||||  |||||||| ||||||||||
Sbjct: 18536273 ggcctcgtcgacgccggcgtcaccaccgtccc 18536242



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 156      ggcctcgtcgagtccggcgtctccaccgtccc 187
                |||||||||||  |||||||| ||||||||||
Sbjct: 18485879 ggcctcgtcgacgccggcgtcaccaccgtccc 18485848
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0652A05
          Length = 150455

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ccgcggcctcgtcgagtccg 171
             ||||||||||||||||||||
Sbjct: 64131 ccgcggcctcgtcgagtccg 64112
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ccatccccgtcgtcgacctc 266
             ||||||||||||||||||||
Sbjct: 13323 ccatccccgtcgtcgacctc 13342
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ccatccccgtcgtcgacctc 266
              ||||||||||||||||||||
Sbjct: 115522 ccatccccgtcgtcgacctc 115541
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>dbj|AP004634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0671F11
          Length = 159409

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 156    ggcctcgtcgagtccggcgtctccaccgtccc 187
              |||||||||||  |||||||| ||||||||||
Sbjct: 144993 ggcctcgtcgacgccggcgtcaccaccgtccc 144962



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 156    ggcctcgtcgagtccggcgtctccaccgtccc 187
              |||||||||||  |||||||| ||||||||||
Sbjct: 118296 ggcctcgtcgacgccggcgtcaccaccgtccc 118265



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 156   ggcctcgtcgagtccggcgtctccaccgtccc 187
             |||||||||||  |||||||| ||||||||||
Sbjct: 67902 ggcctcgtcgacgccggcgtcaccaccgtccc 67871
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>dbj|AK068286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K15, full
           insert sequence
          Length = 1478

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 156 ggcctcgtcgagtccggcgtctccaccgtccc 187
           |||||||||||  |||||||| ||||||||||
Sbjct: 146 ggcctcgtcgacgccggcgtcaccaccgtccc 177
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>emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chromosome 13, complete
              sequence
          Length = 206864

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     cccttcccggccccatcccctcca 34
              |||||||| |||||||||||||||
Sbjct: 155750 cccttccctgccccatcccctcca 155773
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>gb|AC112266.6| Mus musculus BAC clone RP23-422B6 from 13, complete sequence
          Length = 190943

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    accatacaggtggggttcgg 535
              ||||||||||||||||||||
Sbjct: 134989 accatacaggtggggttcgg 135008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,110,059
Number of Sequences: 3902068
Number of extensions: 2110059
Number of successful extensions: 45084
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44294
Number of HSP's gapped (non-prelim): 787
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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