Clone Name | bart17f04 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | IF2_PHOPR (Q6LUJ2) Translation initiation factor IF-2 | 35 | 0.15 | 2 | LDHC_XENLA (P42121) L-lactate dehydrogenase C chain (EC 1.1.1.27... | 30 | 3.7 | 3 | LDHB_XENLA (P42119) L-lactate dehydrogenase B chain (EC 1.1.1.27... | 30 | 3.7 | 4 | ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disinteg... | 30 | 4.9 | 5 | ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta) | 29 | 8.3 |
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>IF2_PHOPR (Q6LUJ2) Translation initiation factor IF-2| Length = 899 Score = 35.0 bits (79), Expect = 0.15 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = -1 Query: 203 GSLRRSTPCAARADELRGRSGKVWLTYPGGRTESPPLHAEAPTSLLPG 60 G+ R+ P A +AD+ +GR G+ GGR + P APTS+ G Sbjct: 261 GTRRKKKPAAKKADDRKGRGGRNQRNQRGGRGKQKP-QVNAPTSMQQG 307
>LDHC_XENLA (P42121) L-lactate dehydrogenase C chain (EC 1.1.1.27) (LDH-C)| Length = 333 Score = 30.4 bits (67), Expect = 3.7 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 278 GENQSSCNTSAIYTGVADSGYHLLMVTGYSH 370 G +Q SCN ++ V DS Y ++ + GY++ Sbjct: 219 GTDQDSCNWKEVHKKVVDSAYEVIKLKGYTN 249
>LDHB_XENLA (P42119) L-lactate dehydrogenase B chain (EC 1.1.1.27) (LDH-B)| Length = 333 Score = 30.4 bits (67), Expect = 3.7 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = +2 Query: 278 GENQSSCNTSAIYTGVADSGYHLLMVTGYSH 370 G +Q SCN ++ V DS Y ++ + GY++ Sbjct: 219 GTDQDSCNWKEVHKKVVDSAYEVIKLKGYTN 249
>ATS5_HUMAN (Q9UNA0) ADAMTS-5 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 5) (ADAM-TS 5) (ADAM-TS5) (Aggrecanase-2) (ADMP-2) (ADAM-TS 11) Length = 930 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -1 Query: 221 GRPHGVGSLRRSTPCAARADELRGRSGKV-WLTYPGGR 111 G PH + RRS D+L GKV +L Y GGR Sbjct: 59 GHPHPLAQRRRSKGLVQNIDQLYSGGGKVGYLVYAGGR 96
>ESR2_ICTPU (Q9IAK1) Estrogen receptor beta (ER-beta)| Length = 575 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 44 RRELC-FRGGATSAPQRGAGATPCGRQGRSARL 139 RRE C +R +AP R A P G +G+S RL Sbjct: 232 RRERCGYRASRRTAPMRDGSARPVGVRGQSQRL 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,505,301 Number of Sequences: 219361 Number of extensions: 1644030 Number of successful extensions: 4678 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 4426 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4677 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)