ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107642.1| Zea mays PCO125868 mRNA sequence 48 0.032
2ref|XM_472557.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
3emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.13
4emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4,... 46 0.13
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
6ref|NM_196502.1| Oryza sativa (japonica cultivar-group) hypothet... 44 0.50
7gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 44 0.50
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
9gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 44 0.50
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
11gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, compl... 44 0.50
12gb|AC099576.12| Mus musculus chromosome 3, clone RP23-93G15, com... 42 2.0
13ref|XM_637994.1| Dictyostelium discoideum hypothetical protein (... 42 2.0
14gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 42 2.0
15gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 2.0
16emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production... 42 2.0
17emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 2.0
18gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 2.0
19gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 2.0
20gb|AC114261.2| Dictyostelium discoideum chromosome 2 map 126059-... 42 2.0
21gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequ... 42 2.0
22gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 2.0
23emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 2.0
24ref|NM_196573.1| Oryza sativa (japonica cultivar-group) putative... 40 7.8
25gb|AF092141.1| Cheilodactylus fuscus cytochrome c oxidase subuni... 40 7.8
26gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete... 40 7.8
27emb|CR450814.4| Zebrafish DNA sequence from clone CH211-157B11 i... 40 7.8
28gb|AE008790.1| Salmonella typhimurium LT2, section 94 of 220 of ... 40 7.8
29gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.8
30gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 40 7.8
31gb|AC104212.3| Homo sapiens chromosome 8, clone RP11-941H19, com... 40 7.8
32gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase... 40 7.8
33gb|DQ351881.1| Mesosagitta decipiens type I 18S small subunit ri... 40 7.8
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
35gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) ch... 40 7.8
36gb|AC009686.14| Homo sapiens chromosome 8, clone RP11-92K15, com... 40 7.8
37dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.8
38dbj|AK071408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.8
39gb|AF026270.2|AF026270 Salmonella enterica serovar Typhimurium P... 40 7.8
40emb|AJ871087.1| Ascaphus truei partial mitochondrial genome 40 7.8
41gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.8
42dbj|D89876.1| Edwardsiella tarda gene for activation/secretion p... 40 7.8 
>gb|AY107642.1| Zea mays PCO125868 mRNA sequence
          Length = 812

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 19  ggcggcgtcgcagccagtggagcg 42
           ||||||||||||||||||||||||
Sbjct: 183 ggcggcgtcgcagccagtggagcg 206
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>ref|XM_472557.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1107

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 449 tactaccccaacggcttaaacaaggactgcgccga 483
           ||||||||||||||||| |||  ||||||||||||
Sbjct: 184 tactaccccaacggcttcaactcggactgcgccga 218
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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
              complete sequence
          Length = 144811

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 449    tactaccccaacggcttaaacaaggactgcgccga 483
              ||||||||||||||||| |||  ||||||||||||
Sbjct: 132338 tactaccccaacggcttcaactcggactgcgccga 132304
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>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19,
            complete sequence
          Length = 156002

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 449  tactaccccaacggcttaaacaaggactgcgccga 483
            ||||||||||||||||| |||  ||||||||||||
Sbjct: 4677 tactaccccaacggcttcaactcggactgcgccga 4643
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 449      tactaccccaacggcttaaacaaggactgcgccga 483
                ||||||||||||||||| |||  ||||||||||||
Sbjct: 21482588 tactaccccaacggcttcaactcggactgcgccga 21482554
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>ref|NM_196502.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0032I20.13), mRNA
          Length = 642

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 443 gtcgagtactaccccaacggct 464
           ||||||||||||||||||||||
Sbjct: 139 gtcgagtactaccccaacggct 160
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>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 443   gtcgagtactaccccaacggct 464
             ||||||||||||||||||||||
Sbjct: 32781 gtcgagtactaccccaacggct 32760
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 443      gtcgagtactaccccaacggct 464
                ||||||||||||||||||||||
Sbjct: 14093143 gtcgagtactaccccaacggct 14093122



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 444      tcgagtactaccccaacggc 463
                ||||||||||||||||||||
Sbjct: 14588364 tcgagtactaccccaacggc 14588383



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 444      tcgagtactaccccaacggc 463
                ||||||||||||||||||||
Sbjct: 14533524 tcgagtactaccccaacggc 14533543
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 443    gtcgagtactaccccaacggct 464
              ||||||||||||||||||||||
Sbjct: 109272 gtcgagtactaccccaacggct 109251
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 443      gtcgagtactaccccaacggct 464
                ||||||||||||||||||||||
Sbjct: 14101385 gtcgagtactaccccaacggct 14101364



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 444      tcgagtactaccccaacggc 463
                ||||||||||||||||||||
Sbjct: 14596605 tcgagtactaccccaacggc 14596624



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 444      tcgagtactaccccaacggc 463
                ||||||||||||||||||||
Sbjct: 14541766 tcgagtactaccccaacggc 14541785
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>gb|AC140264.2| Mus musculus BAC clone RP23-316F10 from 10, complete sequence
          Length = 176292

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 530   gacatggttgtggaggccaagc 551
             ||||||||||||||||||||||
Sbjct: 81102 gacatggttgtggaggccaagc 81123
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>gb|AC099576.12| Mus musculus chromosome 3, clone RP23-93G15, complete sequence
          Length = 156835

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 330   acagcgggtaccacctgctca 350
             |||||||||||||||||||||
Sbjct: 91368 acagcgggtaccacctgctca 91388
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>ref|XM_637994.1| Dictyostelium discoideum hypothetical protein (DDB0217796), partial
            mRNA
          Length = 2871

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 486  tcatttctctcaacgttatcc 506
            |||||||||||||||||||||
Sbjct: 2670 tcatttctctcaacgttatcc 2690
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 157     agctcgtcggcgcgggcggcgcagg 181
               |||||| ||||||||||||||||||
Sbjct: 1315774 agctcggcggcgcgggcggcgcagg 1315750
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 158     gctcgtcggcgcgggcggcgc 178
               |||||||||||||||||||||
Sbjct: 1500401 gctcgtcggcgcgggcggcgc 1500381
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>emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production genes
          Length = 36270

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   agctcgtcggcgcgggcggcg 177
             |||||||||||||||||||||
Sbjct: 19912 agctcgtcggcgcgggcggcg 19892
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 158     gctcgtcggcgcgggcggcgc 178
               |||||||||||||||||||||
Sbjct: 2835168 gctcgtcggcgcgggcggcgc 2835148
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    cagctcgtcggcgcgggcggc 176
              |||||||||||||||||||||
Sbjct: 888175 cagctcgtcggcgcgggcggc 888195
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    gctcgtcggcgcgggcggcgc 178
              |||||||||||||||||||||
Sbjct: 403082 gctcgtcggcgcgggcggcgc 403102
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>gb|AC114261.2| Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4,
             complete sequence
          Length = 33651

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 486   tcatttctctcaacgttatcc 506
             |||||||||||||||||||||
Sbjct: 26988 tcatttctctcaacgttatcc 26968
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>gb|DQ322651.1| Streptomyces sp. FR1 plasmid pFRL1, complete sequence
          Length = 54288

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 157  agctcgtcggcgcgggcggcg 177
            |||||||||||||||||||||
Sbjct: 4684 agctcgtcggcgcgggcggcg 4704
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    gctcgtcggcgcgggcggcgc 178
              |||||||||||||||||||||
Sbjct: 324618 gctcgtcggcgcgggcggcgc 324638
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 157     agctcgtcggcgcgggcggcg 177
               |||||||||||||||||||||
Sbjct: 1366474 agctcgtcggcgcgggcggcg 1366454
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>ref|NM_196573.1| Oryza sativa (japonica cultivar-group) putative speckle-type
           protein (OSJNBa0072A12.13), mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 444 tcgagtactaccccaacggc 463
           ||||||||||||||||||||
Sbjct: 188 tcgagtactaccccaacggc 207
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>gb|AF092141.1| Cheilodactylus fuscus cytochrome c oxidase subunit I gene,
           mitochondrial gene encoding mitochondrial protein,
           partial cds
          Length = 499

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 412 tcttttcacagtgggaggcc 431
           ||||||||||||||||||||
Sbjct: 355 tcttttcacagtgggaggcc 374
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>gb|AY372243.1| Psittacid herpesvirus 1 isolate 97-0001, complete genome
          Length = 163025

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gccagtggagcggcggcgcg 50
             ||||||||||||||||||||
Sbjct: 59212 gccagtggagcggcggcgcg 59193
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>emb|CR450814.4| Zebrafish DNA sequence from clone CH211-157B11 in linkage group 6,
            complete sequence
          Length = 158142

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 421  agtgggaggccatgattggt 440
            ||||||||||||||||||||
Sbjct: 4141 agtgggaggccatgattggt 4160
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>gb|AE008790.1| Salmonella typhimurium LT2, section 94 of 220 of the complete genome
          Length = 20029

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gtcggcgcgggcggcgcagg 181
             ||||||||||||||||||||
Sbjct: 14741 gtcggcgcgggcggcgcagg 14760
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>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12,
             complete sequence
          Length = 149347

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   tcgagtactaccccaacggc 463
             ||||||||||||||||||||
Sbjct: 60826 tcgagtactaccccaacggc 60845



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  tcgagtactaccccaacggc 463
            ||||||||||||||||||||
Sbjct: 5987 tcgagtactaccccaacggc 6006
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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    gctcgtcggcgcgggcggcg 177
              ||||||||||||||||||||
Sbjct: 163229 gctcgtcggcgcgggcggcg 163210
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>gb|AC104212.3| Homo sapiens chromosome 8, clone RP11-941H19, complete sequence
          Length = 196806

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   cgtcggcgcgggcggcgcag 180
             ||||||||||||||||||||
Sbjct: 25666 cgtcggcgcgggcggcgcag 25685
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>gb|U24241.2|SCU24241 Sorangium cellulosum acyl-CoA dehydrogenase (sorE),
            beta-hydroxybutyryl-CoA dehydrogenase (sorD), putative
            methoxymalonyl-CoA synthase (sorC), reductase (sorR),
            soraphen polyketide synthase A (sorA), soraphen
            polyketide synthase B (sorB), O-methyltransferase (sorM),
            beta-mannanase, and xylanse-arabinofuranosidase
            bifunctional enzyme genes, complete cds; and unknown
            genes
          Length = 67523

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  gctcgtcggcgcgggcggcg 177
            ||||||||||||||||||||
Sbjct: 2170 gctcgtcggcgcgggcggcg 2189
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>gb|DQ351881.1| Mesosagitta decipiens type I 18S small subunit ribosomal RNA gene,
           partial sequence
          Length = 1888

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 aggtcggccgccggcgcaag 232
           ||||||||||||||||||||
Sbjct: 277 aggtcggccgccggcgcaag 258
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 523      ccctctcgacatggttgtgg 542
                ||||||||||||||||||||
Sbjct: 13122793 ccctctcgacatggttgtgg 13122774
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>gb|AC025906.2|AC025906 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0075H14,
              complete sequence
          Length = 155420

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 444    tcgagtactaccccaacggc 463
              ||||||||||||||||||||
Sbjct: 147887 tcgagtactaccccaacggc 147906
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>gb|AC009686.14| Homo sapiens chromosome 8, clone RP11-92K15, complete sequence
          Length = 191166

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    cgtcggcgcgggcggcgcag 180
              ||||||||||||||||||||
Sbjct: 167953 cgtcggcgcgggcggcgcag 167972
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0048A13
          Length = 137680

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ccctctcgacatggttgtgg 542
             ||||||||||||||||||||
Sbjct: 44883 ccctctcgacatggttgtgg 44864
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>dbj|AK071408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093D23, full
           insert sequence
          Length = 1262

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 444 tcgagtactaccccaacggc 463
           ||||||||||||||||||||
Sbjct: 270 tcgagtactaccccaacggc 289
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>gb|AF026270.2|AF026270 Salmonella enterica serovar Typhimurium PocR (pocR) gene, partial cds;
             PduF (pudF) gene, complete cds and pdu operon, complete
             sequence
          Length = 19215

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   gtcggcgcgggcggcgcagg 181
             ||||||||||||||||||||
Sbjct: 14415 gtcggcgcgggcggcgcagg 14434
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>emb|AJ871087.1| Ascaphus truei partial mitochondrial genome
          Length = 17790

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 412  tcttttcacagtgggaggcc 431
            ||||||||||||||||||||
Sbjct: 6371 tcttttcacagtgggaggcc 6390
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 154     ctcagctcgtcggcgcgggcggcg 177
               ||||||||| ||||||||||||||
Sbjct: 4626620 ctcagctcggcggcgcgggcggcg 4626597
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>dbj|D89876.1| Edwardsiella tarda gene for activation/secretion protein and
            hemolysin,complete cds
          Length = 7825

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   cctcagcgtggagcgggggc 102
            ||||||||||||||||||||
Sbjct: 1662 cctcagcgtggagcgggggc 1681


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,476,514
Number of Sequences: 3902068
Number of extensions: 3476514
Number of successful extensions: 66054
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64892
Number of HSP's gapped (non-prelim): 1162
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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