ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart17e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur... 40 0.001
2GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2 28 4.9
3GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2 28 8.3

>UCRI_MAIZE (P49727) Ubiquinol-cytochrome c reductase iron-sulfur subunit,|
           mitochondrial precursor (EC 1.10.2.2) (Rieske
           iron-sulfur protein) (RISP)
          Length = 273

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +3

Query: 111 MLRVAGRRLSSSLSWRPAGTV 173
           MLRVAGRRLSSSLSWRPA  V
Sbjct: 1   MLRVAGRRLSSSLSWRPAAAV 21



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>GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2|
          Length = 528

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 48  PSRD*TTIPNLSEEDEDDADEMLRVAGRRLSSSLS 152
           PS+D     N +++D  D+D+ + VA RR SS+L+
Sbjct: 99  PSKDYRENHNNNKKDHSDSDDQMLVAKRRPSSNLN 133



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>GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2|
          Length = 527

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 48  PSRD*TTIPNLSEEDEDDADEMLRVAGRRLSSSLS 152
           PS+D     + +++D  D+D+ + VA RR SS+LS
Sbjct: 98  PSKDYREKHSNNKKDRSDSDDQMLVAKRRPSSNLS 132


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,854,764
Number of Sequences: 219361
Number of extensions: 199704
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
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