ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart17d09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 341 bits (172), Expect = 1e-90 Identities = 280/316 (88%) Strand = Plus / Minus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 3091473 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 3091414 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 3091413 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 3091354 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| || | Sbjct: 3091353 cgtcgtggacctccaccaccgagaacctctacctctggtgcggcggatggcgccccactg 3091294 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 3091293 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 3091234 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 3091233 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 3091174 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 3091173 aggccgccgaccagct 3091158 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Minus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 3091571 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 3091512 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 3091511 cgcgctccgc 3091502 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 39474176 cggcggcgacggcgcggccc 39474157 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 39474083 cggcggcgacggcgcggccc 39474064 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtccgcggccgcctccgccg 292 |||||||||||||||||||| Sbjct: 30659038 gtccgcggccgcctccgccg 30659019
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 341 bits (172), Expect = 1e-90 Identities = 280/316 (88%) Strand = Plus / Minus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 35261 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 35202 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 35201 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 35142 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| || | Sbjct: 35141 cgtcgtggacctccaccaccgagaacctctacctctggtgcggcggatggcgccccactg 35082 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 35081 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 35022 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 35021 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 34962 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 34961 aggccgccgaccagct 34946 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Minus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 35359 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 35300 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 35299 cgcgctccgc 35290
>dbj|AK106334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F11, full insert sequence Length = 1256 Score = 341 bits (172), Expect = 1e-90 Identities = 280/316 (88%) Strand = Plus / Plus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 223 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 282 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 283 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 342 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| || | Sbjct: 343 cgtcgtggacctccaccaccgagaacctctacctctggtgcggcggatggcgccccactg 402 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 403 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 462 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 463 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 522 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 523 aggccgccgaccagct 538 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 125 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 184 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 185 cgcgctccgc 194
>dbj|AK070330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049H21, full insert sequence Length = 1264 Score = 341 bits (172), Expect = 1e-90 Identities = 280/316 (88%) Strand = Plus / Plus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 226 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 285 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 286 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 345 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| || | Sbjct: 346 cgtcgtggacctccaccaccgagaacctctacctctggtgcggcggatggcgccccactg 405 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 406 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 465 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 466 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 525 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 526 aggccgccgaccagct 541 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 128 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 187 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 188 cgcgctccgc 197
>dbj|AP002539.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0433F09 Length = 150150 Score = 341 bits (172), Expect = 1e-90 Identities = 280/316 (88%) Strand = Plus / Minus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 59513 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 59454 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 59453 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 59394 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| ||||||||||||||||||||| |||||||| || | Sbjct: 59393 cgtcgtggacctccaccaccgagaacctctacctctggtgcggcggatggcgccccactg 59334 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 59333 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 59274 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 59273 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 59214 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 59213 aggccgccgaccagct 59198 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Minus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 59611 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 59552 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 59551 cgcgctccgc 59542
>dbj|AK106273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-G11, full insert sequence Length = 1336 Score = 333 bits (168), Expect = 3e-88 Identities = 279/316 (88%) Strand = Plus / Plus Query: 194 cggcgcggccccacgacgctgacctccggcgcctcgtcgaccgtgtcctcggccactacg 253 |||||| |||| ||||||| || |||| ||||||||| |||| |||||||||||||||| Sbjct: 222 cggcgccgcccgacgacgccgagctccaccgcctcgtcaaccgggtcctcggccactacg 281 Query: 254 agaactactaccgcgccaagtccgcggccgcctccgccgatgtgctccccatgttcgcgc 313 || |||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | | Sbjct: 282 agcactactaccggaccaagtccgccgccgcctccaccgacgtgctccgcatgttctccc 341 Query: 314 cctcgtggatctccgccaccgagagcctctacctctggtgcggcggctggcgccctaccg 373 | ||||||| |||| ||||||||| |||||||||||||||| |||| |||||||| || | Sbjct: 342 cgtcgtggacctccaccaccgagaacctctacctctggtgcagcggatggcgccccactg 401 Query: 374 ccgcggtccagctgctctactccaagtccggcgtgcagctcgaggcccagctcccggcct 433 ||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||| | Sbjct: 402 ccgcgctccacctgctctactccaagtccggcgcgcagctcgagacccagctcccggtgt 461 Query: 434 tcctcgacggcggcagcctcgggggcggcgacctcggcggcctctccgcggagcagctcc 493 |||||| ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| Sbjct: 462 tcctcgccggcggcggcctcggggcgggcgacctcggcgacctctccgccgagcagctcc 521 Query: 494 aggccgccgaccagct 509 |||||||||||||||| Sbjct: 522 aggccgccgaccagct 537 Score = 99.6 bits (50), Expect = 9e-18 Identities = 65/70 (92%) Strand = Plus / Plus Query: 114 cggcgagtccttcgccaagttcttcgagtgctggatcttggagcagtcccgtgacctggc 173 ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 124 cggcgagtcgttcgccaagttcttcgagtgctggatctccgagcagtcccgcgacctcgc 183 Query: 174 cgcgctccgc 183 |||||||||| Sbjct: 184 cgcgctccgc 193
>ref|XM_364211.1| Magnaporthe grisea 70-15 predicted protein (MG09056.4) partial mRNA Length = 1404 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 457 ggcggcgacctcggcggcctct 478 |||||||||||||||||||||| Sbjct: 591 ggcggcgacctcggcggcctct 570
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 426 cccggccttcctcgacggcggc 447 |||||||||||||||||||||| Sbjct: 1582481 cccggccttcctcgacggcggc 1582502
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 174 cgcgctccgcgcggcggcgacggcgcggc 202 ||||| |||||||||||||| |||||||| Sbjct: 1082608 cgcgcgccgcgcggcggcgagggcgcggc 1082580
>ref|XM_427670.1| PREDICTED: Gallus gallus similar to hypothetical protein DKFZp686O1689 (LOC430112), partial mRNA Length = 1004 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 ggatctccgccaccgagagcc 340 ||||||||||||||||||||| Sbjct: 688 ggatctccgccaccgagagcc 668
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 cgcgctccgcgcggcggcgacggcgcggc 202 ||||| |||||||||||||| |||||||| Sbjct: 2389277 cgcgcgccgcgcggcggcgagggcgcggc 2389305
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 cgctgacctccggcgcctcgt 230 ||||||||||||||||||||| Sbjct: 4838744 cgctgacctccggcgcctcgt 4838724
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 cgcggcggcgacggcgcggcc 203 ||||||||||||||||||||| Sbjct: 52728 cgcggcggcgacggcgcggcc 52748
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 174 cgcgctccgcgcggcggcgacggcgcggc 202 ||||| |||||||||||||| |||||||| Sbjct: 1995294 cgcgcgccgcgcggcggcgagggcgcggc 1995266
>emb|AL645771.1|SCSCP2 Streptomyces coelicolor A3(2) plasmid SCP2 Length = 31317 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 451 ctcgggggcggcgacctcggcggcc 475 ||||| ||||||||||||||||||| Sbjct: 23708 ctcggcggcggcgacctcggcggcc 23732
>emb|AJ414671.1|SCO414671 Streptomyces coelicolor plasmid 2 (SCP2*) Length = 7686 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 ctcgggggcggcgacctcggcggcc 475 ||||| ||||||||||||||||||| Sbjct: 6969 ctcggcggcggcgacctcggcggcc 6945
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 171 ggccgcgctccgcgcggcggcgacggcgc 199 |||||||||| |||| ||||||||||||| Sbjct: 5245680 ggccgcgctcggcgccgcggcgacggcgc 5245708
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 476 tctccgcggagcagctccaggccgc 500 ||||||| ||||||||||||||||| Sbjct: 1190755 tctccgccgagcagctccaggccgc 1190731 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 cgcctcgtcgaccgtgtcctcggc 246 |||||||||||||| ||||||||| Sbjct: 8775068 cgcctcgtcgaccgcgtcctcggc 8775091 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cgtcgaccgtgtcctcggcc 247 |||||||||||||||||||| Sbjct: 7017059 cgtcgaccgtgtcctcggcc 7017040 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 cgctgacctccggcgcctcgtcga 233 |||||| ||||||||||||||||| Sbjct: 3232032 cgctgaactccggcgcctcgtcga 3232055
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 tccgcgcggcggcgacggcgc 199 ||||||||||||||||||||| Sbjct: 1748381 tccgcgcggcggcgacggcgc 1748361
>dbj|AK110068.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-160-E05, full insert sequence Length = 3250 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 434 tcctcgacggcggcagcctcgggggcggc 462 ||||||||||||||| |||||| |||||| Sbjct: 1761 tcctcgacggcggcatcctcggtggcggc 1733
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 cctcgacggcggcagcctcgg 455 ||||||||||||||||||||| Sbjct: 3875644 cctcgacggcggcagcctcgg 3875624
>dbj|AB032367.1| Streptomyces avermitilis polyketide synthase gene cluster (aveA1, aveA2, aveA3, aveA4) and aveC, aveE genes, complete cds Length = 64957 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 476 tctccgcggagcagctccaggccgc 500 ||||||| ||||||||||||||||| Sbjct: 53039 tctccgccgagcagctccaggccgc 53015
>ref|XM_511318.1| PREDICTED: Pan troglodytes similar to ATP synthase mitochondrial F1 complex assembly factor 2 (LOC454483), mRNA Length = 1070 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgcgcggcggcgacggcgcg 200 |||||||||||||||||||| Sbjct: 11 cgcgcggcggcgacggcgcg 30
>ref|XM_482697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1923 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 441 cggcggcagcctcgggggcggcgacctc 468 |||||||| |||||| |||||||||||| Sbjct: 295 cggcggcatcctcggtggcggcgacctc 322
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcgcggcggcgacggcgcgg 201 |||||||||||||||||||| Sbjct: 2925376 gcgcggcggcgacggcgcgg 2925357
>ref|XM_463576.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1695 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 728 cggcggcgacggcgcggccc 747 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 635 cggcggcgacggcgcggccc 654
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ctcgacggcggcagcctcgg 455 |||||||||||||||||||| Sbjct: 5386058 ctcgacggcggcagcctcgg 5386077
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ccggcgcctcgtcgaccgtg 238 |||||||||||||||||||| Sbjct: 2031380 ccggcgcctcgtcgaccgtg 2031399
>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence Length = 197370 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 158816 cggagcagctccaggccgcc 158835
>ref|NM_013227.1| Homo sapiens aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122) (AGC1), transcript variant 2, mRNA Length = 7434 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 1589 cggagcagctccaggccgcc 1608
>ref|NM_001135.1| Homo sapiens aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122) (AGC1), transcript variant 1, mRNA Length = 7137 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 1589 cggagcagctccaggccgcc 1608
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgcggcggcgacggcgcgg 201 |||||||||||||||||||| Sbjct: 4777813 gcgcggcggcgacggcgcgg 4777832 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 ggcggcgacctcggcggcct 476 |||||||||||||||||||| Sbjct: 2523398 ggcggcgacctcggcggcct 2523417
>gb|AC110285.14| Homo sapiens chromosome 17, clone RP11-1055B8, complete sequence Length = 119991 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gagccacttggatcaccatg 57 |||||||||||||||||||| Sbjct: 95514 gagccacttggatcaccatg 95533
>ref|XM_778863.1| PREDICTED: Strongylocentrotus purpuratus similar to dystonin isoform 1 (LOC578708), mRNA Length = 33630 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ctgcatcgccgcaccatccg 527 |||||||||||||||||||| Sbjct: 9972 ctgcatcgccgcaccatccg 9991
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 485 agcagctccaggccgccgaccagc 508 |||||| ||||||||||||||||| Sbjct: 3436414 agcagcaccaggccgccgaccagc 3436391 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 tgacctggccgcgctccgcgcggc 188 ||||||||||||| |||||||||| Sbjct: 1335924 tgacctggccgcgatccgcgcggc 1335901
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcggcggcgacggcgcggc 202 |||||||||||||||||||| Sbjct: 119517 cgcggcggcgacggcgcggc 119498
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcggcggcgacggcgcggc 202 |||||||||||||||||||| Sbjct: 231920 cgcggcggcgacggcgcggc 231901
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgcggcggcgacggcgcggc 202 |||||||||||||||||||| Sbjct: 215489 cgcggcggcgacggcgcggc 215470
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ccggcgcctcgtcgaccgtg 238 |||||||||||||||||||| Sbjct: 192985 ccggcgcctcgtcgaccgtg 193004
>gb|BC036445.1| Homo sapiens aggrecan 1 (chondroitin sulfate proteoglycan 1, large aggregating proteoglycan, antigen identified by monoclonal antibody A0122), mRNA (cDNA clone IMAGE:4823544), complete cds Length = 4178 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 1874 cggagcagctccaggccgcc 1893
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 tccgcgcggcggcgacggcg 198 |||||||||||||||||||| Sbjct: 169510 tccgcgcggcggcgacggcg 169529
>emb|BX323864.8| Zebrafish DNA sequence from clone CH211-218K4 in linkage group 17, complete sequence Length = 154824 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 atgtgctccccatgttcgcg 312 |||||||||||||||||||| Sbjct: 131494 atgtgctccccatgttcgcg 131475
>emb|CR457444.6| Zebrafish DNA sequence from clone CH211-11C3 in linkage group 11, complete sequence Length = 170537 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gatgtgctccccatgttcgc 311 |||||||||||||||||||| Sbjct: 68443 gatgtgctccccatgttcgc 68424
>gb|AC087163.10| Homo sapiens chromosome 17, clone RP11-384M20, complete sequence Length = 140195 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgcgcggcggcgacggcgcg 200 |||||||||||||||||||| Sbjct: 135 cgcgcggcggcgacggcgcg 154
>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0497A05 Length = 130919 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 28618 cggcggcgacggcgcggccc 28599 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 28525 cggcggcgacggcgcggccc 28506
>gb|AC087164.9| Homo sapiens chromosome 17, clone RP11-258F1, complete sequence Length = 164429 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgcgcggcggcgacggcgcg 200 |||||||||||||||||||| Sbjct: 151149 cgcgcggcggcgacggcgcg 151168
>dbj|AK147250.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1002D21 product:B930044J06 protein (Fragment), full insert sequence Length = 10713 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gagccacttggatcaccatg 57 |||||||||||||||||||| Sbjct: 793 gagccacttggatcaccatg 812
>ref|XM_938439.1| PREDICTED: Homo sapiens similar to aggrecan 1 isoform 2 precursor (LOC649366), mRNA Length = 8040 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 1904 cggagcagctccaggccgcc 1923
>gb|AC067805.9| Homo sapiens chromosome 15, clone RP11-63A23, complete sequence Length = 170883 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 42221 cggagcagctccaggccgcc 42240
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 ggcggcgacctcggcggcct 476 |||||||||||||||||||| Sbjct: 3655954 ggcggcgacctcggcggcct 3655935
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ccggcgcctcgtcgaccgtg 238 |||||||||||||||||||| Sbjct: 2131993 ccggcgcctcgtcgaccgtg 2131974
>tpg|BK001315.1| TPA: TPA_exp: Rattus norvegicus seminal vesicle-secreted protein I gene, complete cds Length = 6000 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 agctcccggccttcctcgac 441 |||||||||||||||||||| Sbjct: 4502 agctcccggccttcctcgac 4483
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 441 cggcggcagcctcgggggcggcgacctc 468 |||||||| |||||| |||||||||||| Sbjct: 21971121 cggcggcatcctcggtggcggcgacctc 21971148
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gtccgcggccgcctccgccg 292 |||||||||||||||||||| Sbjct: 28722349 gtccgcggccgcctccgccg 28722368 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gcggcggcgacggcgcggccccac 207 |||||||||||||||| ||||||| Sbjct: 5007804 gcggcggcgacggcgccgccccac 5007827
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gtccgcggccgcctccgccg 292 |||||||||||||||||||| Sbjct: 101315 gtccgcggccgcctccgccg 101296
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 ggccgcgctccgcgcggcggcgacggcg 198 |||||||||| |||||||||||||||| Sbjct: 4700316 ggccgcgctcaccgcggcggcgacggcg 4700289 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 gcgcggcggcgacggcgcggcccc 205 ||||||||||||||| |||||||| Sbjct: 1608211 gcgcggcggcgacggggcggcccc 1608188
>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1417F08 Length = 155536 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 49190 cggcggcgacggcgcggccc 49171 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggcgacggcgcggccc 204 |||||||||||||||||||| Sbjct: 49097 cggcggcgacggcgcggccc 49078
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gtccgcggccgcctccgccg 292 |||||||||||||||||||| Sbjct: 29910 gtccgcggccgcctccgccg 29929
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ctccggcgcctcgtcgaccg 236 |||||||||||||||||||| Sbjct: 7662912 ctccggcgcctcgtcgaccg 7662931
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 gcggcggcgacggcgcggccccac 207 |||||||||||||||| ||||||| Sbjct: 49493 gcggcggcgacggcgccgccccac 49516
>dbj|AP003798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_H01 Length = 128124 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 441 cggcggcagcctcgggggcggcgacctc 468 |||||||| |||||| |||||||||||| Sbjct: 56870 cggcggcatcctcggtggcggcgacctc 56897
>dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A02, full insert sequence Length = 1075 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcggcggcgacggcgcggcc 203 |||||||||||||||||||| Sbjct: 756 gcggcggcgacggcgcggcc 737
>emb|AJ333678.1|HSA333678 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-BG5RS Length = 735 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 494 aggccgccgaccagctgcatcgccgcaccatc 525 |||||||||||| ||||| | ||||||||||| Sbjct: 100 aggccgccgacctgctgcgtggccgcaccatc 131
>emb|AJ325484.1|HSA325484 Homo sapiens genomic sequence surrounding NotI site, clone HSJ41-841 Length = 572 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 494 aggccgccgaccagctgcatcgccgcaccatc 525 |||||||||||| ||||| | ||||||||||| Sbjct: 100 aggccgccgacctgctgcgtggccgcaccatc 131
>dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C06, full insert sequence Length = 1372 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcggcggcgacggcgcggcc 203 |||||||||||||||||||| Sbjct: 646 gcggcggcgacggcgcggcc 665
>dbj|AK058651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F02, full insert sequence Length = 1923 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 441 cggcggcagcctcgggggcggcgacctc 468 |||||||| |||||| |||||||||||| Sbjct: 295 cggcggcatcctcggtggcggcgacctc 322
>gb|AF170704.1|AF170704 Streptomyces spectabilis SpcC (spcC) gene, partial cds; SpcB (spcB), SpcA (spcA), SpcT (spcT), SpcN (spcN), and SpcZ (spcZ) genes, complete cds; and unknown gene, partial cds Length = 6682 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gcgcggcggcgacggcgcggcccc 205 |||||||||||||||||| ||||| Sbjct: 5385 gcgcggcggcgacggcgccgcccc 5408
>gb|AF128442.1|AF128442 Lolium perenne pollen allergen Lol p VA precursor, mRNA, complete cds Length = 1229 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 449 gcctcgggggcggcgacctcggcggcct 476 |||||||||| |||| |||||||||||| Sbjct: 428 gcctcgggggtggcgccctcggcggcct 401
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcggcggcgacggcgcggcc 203 |||||||||||||||||||| Sbjct: 1954616 gcggcggcgacggcgcggcc 1954597 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ccggcgcctcgtcgaccgtg 238 |||||||||||||||||||| Sbjct: 259678 ccggcgcctcgtcgaccgtg 259697
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 gcgcggcggcgacggcgcgg 201 |||||||||||||||||||| Sbjct: 3970641 gcgcggcggcgacggcgcgg 3970660
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcggcggcgacggcgcggcc 203 |||||||||||||||||||| Sbjct: 771430 gcggcggcgacggcgcggcc 771449
>emb|AL928567.6| Mouse DNA sequence from clone RP23-296K20 on chromosome 11, complete sequence Length = 111073 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 gagccacttggatcaccatg 57 |||||||||||||||||||| Sbjct: 39237 gagccacttggatcaccatg 39256
>gb|M55172.1|HUMAGPRO Human large aggregating cartilage proteoglycan core protein mRNA, complete cds Length = 7137 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 cggagcagctccaggccgcc 501 |||||||||||||||||||| Sbjct: 1589 cggagcagctccaggccgcc 1608
>dbj|AB070941.1| Streptomyces avermitilis polyketide-1 biosynthetic gene cluster Length = 24045 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 223 cgcctcgtcgaccgtgtcctcggc 246 |||||||||||||| ||||||||| Sbjct: 1060 cgcctcgtcgaccgcgtcctcggc 1083 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,234,245 Number of Sequences: 3902068 Number of extensions: 3234245 Number of successful extensions: 97162 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91452 Number of HSP's gapped (non-prelim): 5710 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
